data_3M9M # _entry.id 3M9M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3M9M pdb_00003m9m 10.2210/pdb3m9m/pdb NDB NA0498 ? ? RCSB RCSB058281 ? ? WWPDB D_1000058281 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-06-16 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2023-09-06 5 'Structure model' 1 4 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' pdbx_struct_conn_angle 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_site 9 5 'Structure model' pdbx_entity_src_syn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.value' 24 4 'Structure model' '_struct_conn.pdbx_dist_value' 25 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 27 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 34 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 38 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 39 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 40 4 'Structure model' '_struct_site.pdbx_auth_seq_id' 41 5 'Structure model' '_pdbx_entity_src_syn.details' 42 5 'Structure model' '_pdbx_entity_src_syn.entity_id' 43 5 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 44 5 'Structure model' '_pdbx_entity_src_syn.organism_scientific' # _pdbx_database_status.entry_id 3M9M _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-03-22 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3M9N . unspecified PDB 3M9O . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wong, J.H.Y.' 1 'Ling, H.' 2 # _citation.id primary _citation.title 'Structural insight into dynamic bypass of the major cisplatin-DNA adduct by Y-family polymerase Dpo4.' _citation.journal_abbrev 'Embo J.' _citation.journal_volume 29 _citation.page_first 2059 _citation.page_last 2069 _citation.year 2010 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20512114 _citation.pdbx_database_id_DOI 10.1038/emboj.2010.101 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wong, J.H.' 1 ? primary 'Brown, J.A.' 2 ? primary 'Suo, Z.' 3 ? primary 'Blum, P.' 4 ? primary 'Nohmi, T.' 5 ? primary 'Ling, H.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA polymerase IV' 40257.879 1 2.7.7.7 ? ? ? 2 polymer syn ;DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*AP*AP*G)-3') ; 4154.722 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*TP*CP*TP*GP*GP*CP*TP*TP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3') ; 5345.439 1 ? ? ? ? 4 non-polymer syn "CYTIDINE-5'-TRIPHOSPHATE" 483.156 1 ? ? ? ? 5 non-polymer syn 'CALCIUM ION' 40.078 4 ? ? ? ? 6 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 7 non-polymer syn Cisplatin 300.045 1 ? ? ? ? 8 water nat water 18.015 51 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Pol IV' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ KILEEDERKIRRIGVRFSKFIEAIGLDKFFDT ; ;MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ KILEEDERKIRRIGVRFSKFIEAIGLDKFFDT ; B ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DG)(DG)(DG)(DA)(DA)(DG)(DG)(DA)(DA)(DA)(DG)' GGGGGAAGGAAAG P ? 3 polydeoxyribonucleotide no no '(DT)(DC)(DT)(DG)(DG)(DC)(DT)(DT)(DT)(DC)(DC)(DT)(DT)(DC)(DC)(DC)(DC)(DC)' TCTGGCTTTCCTTCCCCC T ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 "CYTIDINE-5'-TRIPHOSPHATE" CTP 5 'CALCIUM ION' CA 6 GLYCEROL GOL 7 Cisplatin CPT 8 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ILE n 1 3 VAL n 1 4 LEU n 1 5 PHE n 1 6 VAL n 1 7 ASP n 1 8 PHE n 1 9 ASP n 1 10 TYR n 1 11 PHE n 1 12 TYR n 1 13 ALA n 1 14 GLN n 1 15 VAL n 1 16 GLU n 1 17 GLU n 1 18 VAL n 1 19 LEU n 1 20 ASN n 1 21 PRO n 1 22 SER n 1 23 LEU n 1 24 LYS n 1 25 GLY n 1 26 LYS n 1 27 PRO n 1 28 VAL n 1 29 VAL n 1 30 VAL n 1 31 CYS n 1 32 VAL n 1 33 PHE n 1 34 SER n 1 35 GLY n 1 36 ARG n 1 37 PHE n 1 38 GLU n 1 39 ASP n 1 40 SER n 1 41 GLY n 1 42 ALA n 1 43 VAL n 1 44 ALA n 1 45 THR n 1 46 ALA n 1 47 ASN n 1 48 TYR n 1 49 GLU n 1 50 ALA n 1 51 ARG n 1 52 LYS n 1 53 PHE n 1 54 GLY n 1 55 VAL n 1 56 LYS n 1 57 ALA n 1 58 GLY n 1 59 ILE n 1 60 PRO n 1 61 ILE n 1 62 VAL n 1 63 GLU n 1 64 ALA n 1 65 LYS n 1 66 LYS n 1 67 ILE n 1 68 LEU n 1 69 PRO n 1 70 ASN n 1 71 ALA n 1 72 VAL n 1 73 TYR n 1 74 LEU n 1 75 PRO n 1 76 MET n 1 77 ARG n 1 78 LYS n 1 79 GLU n 1 80 VAL n 1 81 TYR n 1 82 GLN n 1 83 GLN n 1 84 VAL n 1 85 SER n 1 86 SER n 1 87 ARG n 1 88 ILE n 1 89 MET n 1 90 ASN n 1 91 LEU n 1 92 LEU n 1 93 ARG n 1 94 GLU n 1 95 TYR n 1 96 SER n 1 97 GLU n 1 98 LYS n 1 99 ILE n 1 100 GLU n 1 101 ILE n 1 102 ALA n 1 103 SER n 1 104 ILE n 1 105 ASP n 1 106 GLU n 1 107 ALA n 1 108 TYR n 1 109 LEU n 1 110 ASP n 1 111 ILE n 1 112 SER n 1 113 ASP n 1 114 LYS n 1 115 VAL n 1 116 ARG n 1 117 ASP n 1 118 TYR n 1 119 ARG n 1 120 GLU n 1 121 ALA n 1 122 TYR n 1 123 ASN n 1 124 LEU n 1 125 GLY n 1 126 LEU n 1 127 GLU n 1 128 ILE n 1 129 LYS n 1 130 ASN n 1 131 LYS n 1 132 ILE n 1 133 LEU n 1 134 GLU n 1 135 LYS n 1 136 GLU n 1 137 LYS n 1 138 ILE n 1 139 THR n 1 140 VAL n 1 141 THR n 1 142 VAL n 1 143 GLY n 1 144 ILE n 1 145 SER n 1 146 LYS n 1 147 ASN n 1 148 LYS n 1 149 VAL n 1 150 PHE n 1 151 ALA n 1 152 LYS n 1 153 ILE n 1 154 ALA n 1 155 ALA n 1 156 ASP n 1 157 MET n 1 158 ALA n 1 159 LYS n 1 160 PRO n 1 161 ASN n 1 162 GLY n 1 163 ILE n 1 164 LYS n 1 165 VAL n 1 166 ILE n 1 167 ASP n 1 168 ASP n 1 169 GLU n 1 170 GLU n 1 171 VAL n 1 172 LYS n 1 173 ARG n 1 174 LEU n 1 175 ILE n 1 176 ARG n 1 177 GLU n 1 178 LEU n 1 179 ASP n 1 180 ILE n 1 181 ALA n 1 182 ASP n 1 183 VAL n 1 184 PRO n 1 185 GLY n 1 186 ILE n 1 187 GLY n 1 188 ASN n 1 189 ILE n 1 190 THR n 1 191 ALA n 1 192 GLU n 1 193 LYS n 1 194 LEU n 1 195 LYS n 1 196 LYS n 1 197 LEU n 1 198 GLY n 1 199 ILE n 1 200 ASN n 1 201 LYS n 1 202 LEU n 1 203 VAL n 1 204 ASP n 1 205 THR n 1 206 LEU n 1 207 SER n 1 208 ILE n 1 209 GLU n 1 210 PHE n 1 211 ASP n 1 212 LYS n 1 213 LEU n 1 214 LYS n 1 215 GLY n 1 216 MET n 1 217 ILE n 1 218 GLY n 1 219 GLU n 1 220 ALA n 1 221 LYS n 1 222 ALA n 1 223 LYS n 1 224 TYR n 1 225 LEU n 1 226 ILE n 1 227 SER n 1 228 LEU n 1 229 ALA n 1 230 ARG n 1 231 ASP n 1 232 GLU n 1 233 TYR n 1 234 ASN n 1 235 GLU n 1 236 PRO n 1 237 ILE n 1 238 ARG n 1 239 THR n 1 240 ARG n 1 241 VAL n 1 242 ARG n 1 243 LYS n 1 244 SER n 1 245 ILE n 1 246 GLY n 1 247 ARG n 1 248 ILE n 1 249 VAL n 1 250 THR n 1 251 MET n 1 252 LYS n 1 253 ARG n 1 254 ASN n 1 255 SER n 1 256 ARG n 1 257 ASN n 1 258 LEU n 1 259 GLU n 1 260 GLU n 1 261 ILE n 1 262 LYS n 1 263 PRO n 1 264 TYR n 1 265 LEU n 1 266 PHE n 1 267 ARG n 1 268 ALA n 1 269 ILE n 1 270 GLU n 1 271 GLU n 1 272 SER n 1 273 TYR n 1 274 TYR n 1 275 LYS n 1 276 LEU n 1 277 ASP n 1 278 LYS n 1 279 ARG n 1 280 ILE n 1 281 PRO n 1 282 LYS n 1 283 ALA n 1 284 ILE n 1 285 HIS n 1 286 VAL n 1 287 VAL n 1 288 ALA n 1 289 VAL n 1 290 THR n 1 291 GLU n 1 292 ASP n 1 293 LEU n 1 294 ASP n 1 295 ILE n 1 296 VAL n 1 297 SER n 1 298 ARG n 1 299 GLY n 1 300 ARG n 1 301 THR n 1 302 PHE n 1 303 PRO n 1 304 HIS n 1 305 GLY n 1 306 ILE n 1 307 SER n 1 308 LYS n 1 309 GLU n 1 310 THR n 1 311 ALA n 1 312 TYR n 1 313 SER n 1 314 GLU n 1 315 SER n 1 316 VAL n 1 317 LYS n 1 318 LEU n 1 319 LEU n 1 320 GLN n 1 321 LYS n 1 322 ILE n 1 323 LEU n 1 324 GLU n 1 325 GLU n 1 326 ASP n 1 327 GLU n 1 328 ARG n 1 329 LYS n 1 330 ILE n 1 331 ARG n 1 332 ARG n 1 333 ILE n 1 334 GLY n 1 335 VAL n 1 336 ARG n 1 337 PHE n 1 338 SER n 1 339 LYS n 1 340 PHE n 1 341 ILE n 1 342 GLU n 1 343 ALA n 1 344 ILE n 1 345 GLY n 1 346 LEU n 1 347 ASP n 1 348 LYS n 1 349 PHE n 1 350 PHE n 1 351 ASP n 1 352 THR n 2 1 DG n 2 2 DG n 2 3 DG n 2 4 DG n 2 5 DG n 2 6 DA n 2 7 DA n 2 8 DG n 2 9 DG n 2 10 DA n 2 11 DA n 2 12 DA n 2 13 DG n 3 1 DT n 3 2 DC n 3 3 DT n 3 4 DG n 3 5 DG n 3 6 DC n 3 7 DT n 3 8 DT n 3 9 DT n 3 10 DC n 3 11 DC n 3 12 DT n 3 13 DT n 3 14 DC n 3 15 DC n 3 16 DC n 3 17 DC n 3 18 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'dbh, dpo4, SSO2448' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain P2 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfolobus solfataricus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2287 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET22b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? 'Synthetic construct' ? 32630 ? 3 1 sample ? ? 'Synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CPT non-polymer . Cisplatin 'diammine(dichloro)platinum' 'Cl2 H6 N2 Pt' 300.045 CTP non-polymer . "CYTIDINE-5'-TRIPHOSPHATE" ? 'C9 H16 N3 O14 P3' 483.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET B . n A 1 2 ILE 2 2 2 ILE ILE B . n A 1 3 VAL 3 3 3 VAL VAL B . n A 1 4 LEU 4 4 4 LEU LEU B . n A 1 5 PHE 5 5 5 PHE PHE B . n A 1 6 VAL 6 6 6 VAL VAL B . n A 1 7 ASP 7 7 7 ASP ASP B . n A 1 8 PHE 8 8 8 PHE PHE B . n A 1 9 ASP 9 9 9 ASP ASP B . n A 1 10 TYR 10 10 10 TYR TYR B . n A 1 11 PHE 11 11 11 PHE PHE B . n A 1 12 TYR 12 12 12 TYR TYR B . n A 1 13 ALA 13 13 13 ALA ALA B . n A 1 14 GLN 14 14 14 GLN GLN B . n A 1 15 VAL 15 15 15 VAL VAL B . n A 1 16 GLU 16 16 16 GLU GLU B . n A 1 17 GLU 17 17 17 GLU GLU B . n A 1 18 VAL 18 18 18 VAL VAL B . n A 1 19 LEU 19 19 19 LEU LEU B . n A 1 20 ASN 20 20 20 ASN ASN B . n A 1 21 PRO 21 21 21 PRO PRO B . n A 1 22 SER 22 22 22 SER SER B . n A 1 23 LEU 23 23 23 LEU LEU B . n A 1 24 LYS 24 24 24 LYS LYS B . n A 1 25 GLY 25 25 25 GLY GLY B . n A 1 26 LYS 26 26 26 LYS LYS B . n A 1 27 PRO 27 27 27 PRO PRO B . n A 1 28 VAL 28 28 28 VAL VAL B . n A 1 29 VAL 29 29 29 VAL VAL B . n A 1 30 VAL 30 30 30 VAL VAL B . n A 1 31 CYS 31 31 31 CYS CYS B . n A 1 32 VAL 32 32 32 VAL VAL B . n A 1 33 PHE 33 33 33 PHE PHE B . n A 1 34 SER 34 34 34 SER SER B . n A 1 35 GLY 35 35 35 GLY GLY B . n A 1 36 ARG 36 36 36 ARG ARG B . n A 1 37 PHE 37 37 37 PHE PHE B . n A 1 38 GLU 38 38 38 GLU GLU B . n A 1 39 ASP 39 39 39 ASP ASP B . n A 1 40 SER 40 40 40 SER SER B . n A 1 41 GLY 41 41 41 GLY GLY B . n A 1 42 ALA 42 42 42 ALA ALA B . n A 1 43 VAL 43 43 43 VAL VAL B . n A 1 44 ALA 44 44 44 ALA ALA B . n A 1 45 THR 45 45 45 THR THR B . n A 1 46 ALA 46 46 46 ALA ALA B . n A 1 47 ASN 47 47 47 ASN ASN B . n A 1 48 TYR 48 48 48 TYR TYR B . n A 1 49 GLU 49 49 49 GLU GLU B . n A 1 50 ALA 50 50 50 ALA ALA B . n A 1 51 ARG 51 51 51 ARG ARG B . n A 1 52 LYS 52 52 52 LYS LYS B . n A 1 53 PHE 53 53 53 PHE PHE B . n A 1 54 GLY 54 54 54 GLY GLY B . n A 1 55 VAL 55 55 55 VAL VAL B . n A 1 56 LYS 56 56 56 LYS LYS B . n A 1 57 ALA 57 57 57 ALA ALA B . n A 1 58 GLY 58 58 58 GLY GLY B . n A 1 59 ILE 59 59 59 ILE ILE B . n A 1 60 PRO 60 60 60 PRO PRO B . n A 1 61 ILE 61 61 61 ILE ILE B . n A 1 62 VAL 62 62 62 VAL VAL B . n A 1 63 GLU 63 63 63 GLU GLU B . n A 1 64 ALA 64 64 64 ALA ALA B . n A 1 65 LYS 65 65 65 LYS LYS B . n A 1 66 LYS 66 66 66 LYS LYS B . n A 1 67 ILE 67 67 67 ILE ILE B . n A 1 68 LEU 68 68 68 LEU LEU B . n A 1 69 PRO 69 69 69 PRO PRO B . n A 1 70 ASN 70 70 70 ASN ASN B . n A 1 71 ALA 71 71 71 ALA ALA B . n A 1 72 VAL 72 72 72 VAL VAL B . n A 1 73 TYR 73 73 73 TYR TYR B . n A 1 74 LEU 74 74 74 LEU LEU B . n A 1 75 PRO 75 75 75 PRO PRO B . n A 1 76 MET 76 76 76 MET MET B . n A 1 77 ARG 77 77 77 ARG ARG B . n A 1 78 LYS 78 78 78 LYS LYS B . n A 1 79 GLU 79 79 79 GLU GLU B . n A 1 80 VAL 80 80 80 VAL VAL B . n A 1 81 TYR 81 81 81 TYR TYR B . n A 1 82 GLN 82 82 82 GLN GLN B . n A 1 83 GLN 83 83 83 GLN GLN B . n A 1 84 VAL 84 84 84 VAL VAL B . n A 1 85 SER 85 85 85 SER SER B . n A 1 86 SER 86 86 86 SER SER B . n A 1 87 ARG 87 87 87 ARG ARG B . n A 1 88 ILE 88 88 88 ILE ILE B . n A 1 89 MET 89 89 89 MET MET B . n A 1 90 ASN 90 90 90 ASN ASN B . n A 1 91 LEU 91 91 91 LEU LEU B . n A 1 92 LEU 92 92 92 LEU LEU B . n A 1 93 ARG 93 93 93 ARG ARG B . n A 1 94 GLU 94 94 94 GLU GLU B . n A 1 95 TYR 95 95 95 TYR TYR B . n A 1 96 SER 96 96 96 SER SER B . n A 1 97 GLU 97 97 97 GLU GLU B . n A 1 98 LYS 98 98 98 LYS LYS B . n A 1 99 ILE 99 99 99 ILE ILE B . n A 1 100 GLU 100 100 100 GLU GLU B . n A 1 101 ILE 101 101 101 ILE ILE B . n A 1 102 ALA 102 102 102 ALA ALA B . n A 1 103 SER 103 103 103 SER SER B . n A 1 104 ILE 104 104 104 ILE ILE B . n A 1 105 ASP 105 105 105 ASP ASP B . n A 1 106 GLU 106 106 106 GLU GLU B . n A 1 107 ALA 107 107 107 ALA ALA B . n A 1 108 TYR 108 108 108 TYR TYR B . n A 1 109 LEU 109 109 109 LEU LEU B . n A 1 110 ASP 110 110 110 ASP ASP B . n A 1 111 ILE 111 111 111 ILE ILE B . n A 1 112 SER 112 112 112 SER SER B . n A 1 113 ASP 113 113 113 ASP ASP B . n A 1 114 LYS 114 114 114 LYS LYS B . n A 1 115 VAL 115 115 115 VAL VAL B . n A 1 116 ARG 116 116 116 ARG ARG B . n A 1 117 ASP 117 117 117 ASP ASP B . n A 1 118 TYR 118 118 118 TYR TYR B . n A 1 119 ARG 119 119 119 ARG ARG B . n A 1 120 GLU 120 120 120 GLU GLU B . n A 1 121 ALA 121 121 121 ALA ALA B . n A 1 122 TYR 122 122 122 TYR TYR B . n A 1 123 ASN 123 123 123 ASN ASN B . n A 1 124 LEU 124 124 124 LEU LEU B . n A 1 125 GLY 125 125 125 GLY GLY B . n A 1 126 LEU 126 126 126 LEU LEU B . n A 1 127 GLU 127 127 127 GLU GLU B . n A 1 128 ILE 128 128 128 ILE ILE B . n A 1 129 LYS 129 129 129 LYS LYS B . n A 1 130 ASN 130 130 130 ASN ASN B . n A 1 131 LYS 131 131 131 LYS LYS B . n A 1 132 ILE 132 132 132 ILE ILE B . n A 1 133 LEU 133 133 133 LEU LEU B . n A 1 134 GLU 134 134 134 GLU GLU B . n A 1 135 LYS 135 135 135 LYS LYS B . n A 1 136 GLU 136 136 136 GLU GLU B . n A 1 137 LYS 137 137 137 LYS LYS B . n A 1 138 ILE 138 138 138 ILE ILE B . n A 1 139 THR 139 139 139 THR THR B . n A 1 140 VAL 140 140 140 VAL VAL B . n A 1 141 THR 141 141 141 THR THR B . n A 1 142 VAL 142 142 142 VAL VAL B . n A 1 143 GLY 143 143 143 GLY GLY B . n A 1 144 ILE 144 144 144 ILE ILE B . n A 1 145 SER 145 145 145 SER SER B . n A 1 146 LYS 146 146 146 LYS LYS B . n A 1 147 ASN 147 147 147 ASN ASN B . n A 1 148 LYS 148 148 148 LYS LYS B . n A 1 149 VAL 149 149 149 VAL VAL B . n A 1 150 PHE 150 150 150 PHE PHE B . n A 1 151 ALA 151 151 151 ALA ALA B . n A 1 152 LYS 152 152 152 LYS LYS B . n A 1 153 ILE 153 153 153 ILE ILE B . n A 1 154 ALA 154 154 154 ALA ALA B . n A 1 155 ALA 155 155 155 ALA ALA B . n A 1 156 ASP 156 156 156 ASP ASP B . n A 1 157 MET 157 157 157 MET MET B . n A 1 158 ALA 158 158 158 ALA ALA B . n A 1 159 LYS 159 159 159 LYS LYS B . n A 1 160 PRO 160 160 160 PRO PRO B . n A 1 161 ASN 161 161 161 ASN ASN B . n A 1 162 GLY 162 162 162 GLY GLY B . n A 1 163 ILE 163 163 163 ILE ILE B . n A 1 164 LYS 164 164 164 LYS LYS B . n A 1 165 VAL 165 165 165 VAL VAL B . n A 1 166 ILE 166 166 166 ILE ILE B . n A 1 167 ASP 167 167 167 ASP ASP B . n A 1 168 ASP 168 168 168 ASP ASP B . n A 1 169 GLU 169 169 169 GLU GLU B . n A 1 170 GLU 170 170 170 GLU GLU B . n A 1 171 VAL 171 171 171 VAL VAL B . n A 1 172 LYS 172 172 172 LYS LYS B . n A 1 173 ARG 173 173 173 ARG ARG B . n A 1 174 LEU 174 174 174 LEU LEU B . n A 1 175 ILE 175 175 175 ILE ILE B . n A 1 176 ARG 176 176 176 ARG ARG B . n A 1 177 GLU 177 177 177 GLU GLU B . n A 1 178 LEU 178 178 178 LEU LEU B . n A 1 179 ASP 179 179 179 ASP ASP B . n A 1 180 ILE 180 180 180 ILE ILE B . n A 1 181 ALA 181 181 181 ALA ALA B . n A 1 182 ASP 182 182 182 ASP ASP B . n A 1 183 VAL 183 183 183 VAL VAL B . n A 1 184 PRO 184 184 184 PRO PRO B . n A 1 185 GLY 185 185 185 GLY GLY B . n A 1 186 ILE 186 186 186 ILE ILE B . n A 1 187 GLY 187 187 187 GLY GLY B . n A 1 188 ASN 188 188 188 ASN ASN B . n A 1 189 ILE 189 189 189 ILE ILE B . n A 1 190 THR 190 190 190 THR THR B . n A 1 191 ALA 191 191 191 ALA ALA B . n A 1 192 GLU 192 192 192 GLU GLU B . n A 1 193 LYS 193 193 193 LYS LYS B . n A 1 194 LEU 194 194 194 LEU LEU B . n A 1 195 LYS 195 195 195 LYS LYS B . n A 1 196 LYS 196 196 196 LYS LYS B . n A 1 197 LEU 197 197 197 LEU LEU B . n A 1 198 GLY 198 198 198 GLY GLY B . n A 1 199 ILE 199 199 199 ILE ILE B . n A 1 200 ASN 200 200 200 ASN ASN B . n A 1 201 LYS 201 201 201 LYS LYS B . n A 1 202 LEU 202 202 202 LEU LEU B . n A 1 203 VAL 203 203 203 VAL VAL B . n A 1 204 ASP 204 204 204 ASP ASP B . n A 1 205 THR 205 205 205 THR THR B . n A 1 206 LEU 206 206 206 LEU LEU B . n A 1 207 SER 207 207 207 SER SER B . n A 1 208 ILE 208 208 208 ILE ILE B . n A 1 209 GLU 209 209 209 GLU GLU B . n A 1 210 PHE 210 210 210 PHE PHE B . n A 1 211 ASP 211 211 211 ASP ASP B . n A 1 212 LYS 212 212 212 LYS LYS B . n A 1 213 LEU 213 213 213 LEU LEU B . n A 1 214 LYS 214 214 214 LYS LYS B . n A 1 215 GLY 215 215 215 GLY GLY B . n A 1 216 MET 216 216 216 MET MET B . n A 1 217 ILE 217 217 217 ILE ILE B . n A 1 218 GLY 218 218 218 GLY GLY B . n A 1 219 GLU 219 219 219 GLU GLU B . n A 1 220 ALA 220 220 220 ALA ALA B . n A 1 221 LYS 221 221 221 LYS LYS B . n A 1 222 ALA 222 222 222 ALA ALA B . n A 1 223 LYS 223 223 223 LYS LYS B . n A 1 224 TYR 224 224 224 TYR TYR B . n A 1 225 LEU 225 225 225 LEU LEU B . n A 1 226 ILE 226 226 226 ILE ILE B . n A 1 227 SER 227 227 227 SER SER B . n A 1 228 LEU 228 228 228 LEU LEU B . n A 1 229 ALA 229 229 229 ALA ALA B . n A 1 230 ARG 230 230 230 ARG ARG B . n A 1 231 ASP 231 231 231 ASP ASP B . n A 1 232 GLU 232 232 232 GLU GLU B . n A 1 233 TYR 233 233 233 TYR TYR B . n A 1 234 ASN 234 234 234 ASN ASN B . n A 1 235 GLU 235 235 235 GLU GLU B . n A 1 236 PRO 236 236 236 PRO PRO B . n A 1 237 ILE 237 237 237 ILE ILE B . n A 1 238 ARG 238 238 238 ARG ARG B . n A 1 239 THR 239 239 239 THR THR B . n A 1 240 ARG 240 240 240 ARG ARG B . n A 1 241 VAL 241 241 241 VAL VAL B . n A 1 242 ARG 242 242 242 ARG ARG B . n A 1 243 LYS 243 243 243 LYS LYS B . n A 1 244 SER 244 244 244 SER SER B . n A 1 245 ILE 245 245 245 ILE ILE B . n A 1 246 GLY 246 246 246 GLY GLY B . n A 1 247 ARG 247 247 247 ARG ARG B . n A 1 248 ILE 248 248 248 ILE ILE B . n A 1 249 VAL 249 249 249 VAL VAL B . n A 1 250 THR 250 250 250 THR THR B . n A 1 251 MET 251 251 251 MET MET B . n A 1 252 LYS 252 252 252 LYS LYS B . n A 1 253 ARG 253 253 253 ARG ARG B . n A 1 254 ASN 254 254 254 ASN ASN B . n A 1 255 SER 255 255 255 SER SER B . n A 1 256 ARG 256 256 256 ARG ARG B . n A 1 257 ASN 257 257 257 ASN ASN B . n A 1 258 LEU 258 258 258 LEU LEU B . n A 1 259 GLU 259 259 259 GLU GLU B . n A 1 260 GLU 260 260 260 GLU GLU B . n A 1 261 ILE 261 261 261 ILE ILE B . n A 1 262 LYS 262 262 262 LYS LYS B . n A 1 263 PRO 263 263 263 PRO PRO B . n A 1 264 TYR 264 264 264 TYR TYR B . n A 1 265 LEU 265 265 265 LEU LEU B . n A 1 266 PHE 266 266 266 PHE PHE B . n A 1 267 ARG 267 267 267 ARG ARG B . n A 1 268 ALA 268 268 268 ALA ALA B . n A 1 269 ILE 269 269 269 ILE ILE B . n A 1 270 GLU 270 270 270 GLU GLU B . n A 1 271 GLU 271 271 271 GLU GLU B . n A 1 272 SER 272 272 272 SER SER B . n A 1 273 TYR 273 273 273 TYR TYR B . n A 1 274 TYR 274 274 274 TYR TYR B . n A 1 275 LYS 275 275 275 LYS LYS B . n A 1 276 LEU 276 276 276 LEU LEU B . n A 1 277 ASP 277 277 277 ASP ASP B . n A 1 278 LYS 278 278 278 LYS LYS B . n A 1 279 ARG 279 279 279 ARG ARG B . n A 1 280 ILE 280 280 280 ILE ILE B . n A 1 281 PRO 281 281 281 PRO PRO B . n A 1 282 LYS 282 282 282 LYS LYS B . n A 1 283 ALA 283 283 283 ALA ALA B . n A 1 284 ILE 284 284 284 ILE ILE B . n A 1 285 HIS 285 285 285 HIS HIS B . n A 1 286 VAL 286 286 286 VAL VAL B . n A 1 287 VAL 287 287 287 VAL VAL B . n A 1 288 ALA 288 288 288 ALA ALA B . n A 1 289 VAL 289 289 289 VAL VAL B . n A 1 290 THR 290 290 290 THR THR B . n A 1 291 GLU 291 291 291 GLU GLU B . n A 1 292 ASP 292 292 292 ASP ASP B . n A 1 293 LEU 293 293 293 LEU LEU B . n A 1 294 ASP 294 294 294 ASP ASP B . n A 1 295 ILE 295 295 295 ILE ILE B . n A 1 296 VAL 296 296 296 VAL VAL B . n A 1 297 SER 297 297 297 SER SER B . n A 1 298 ARG 298 298 298 ARG ARG B . n A 1 299 GLY 299 299 299 GLY GLY B . n A 1 300 ARG 300 300 300 ARG ARG B . n A 1 301 THR 301 301 301 THR THR B . n A 1 302 PHE 302 302 302 PHE PHE B . n A 1 303 PRO 303 303 303 PRO PRO B . n A 1 304 HIS 304 304 304 HIS HIS B . n A 1 305 GLY 305 305 305 GLY GLY B . n A 1 306 ILE 306 306 306 ILE ILE B . n A 1 307 SER 307 307 307 SER SER B . n A 1 308 LYS 308 308 308 LYS LYS B . n A 1 309 GLU 309 309 309 GLU GLU B . n A 1 310 THR 310 310 310 THR THR B . n A 1 311 ALA 311 311 311 ALA ALA B . n A 1 312 TYR 312 312 312 TYR TYR B . n A 1 313 SER 313 313 313 SER SER B . n A 1 314 GLU 314 314 314 GLU GLU B . n A 1 315 SER 315 315 315 SER SER B . n A 1 316 VAL 316 316 316 VAL VAL B . n A 1 317 LYS 317 317 317 LYS LYS B . n A 1 318 LEU 318 318 318 LEU LEU B . n A 1 319 LEU 319 319 319 LEU LEU B . n A 1 320 GLN 320 320 320 GLN GLN B . n A 1 321 LYS 321 321 321 LYS LYS B . n A 1 322 ILE 322 322 322 ILE ILE B . n A 1 323 LEU 323 323 323 LEU LEU B . n A 1 324 GLU 324 324 324 GLU GLU B . n A 1 325 GLU 325 325 325 GLU GLU B . n A 1 326 ASP 326 326 326 ASP ASP B . n A 1 327 GLU 327 327 327 GLU GLU B . n A 1 328 ARG 328 328 328 ARG ARG B . n A 1 329 LYS 329 329 329 LYS LYS B . n A 1 330 ILE 330 330 330 ILE ILE B . n A 1 331 ARG 331 331 331 ARG ARG B . n A 1 332 ARG 332 332 332 ARG ARG B . n A 1 333 ILE 333 333 333 ILE ILE B . n A 1 334 GLY 334 334 334 GLY GLY B . n A 1 335 VAL 335 335 335 VAL VAL B . n A 1 336 ARG 336 336 336 ARG ARG B . n A 1 337 PHE 337 337 337 PHE PHE B . n A 1 338 SER 338 338 338 SER SER B . n A 1 339 LYS 339 339 339 LYS LYS B . n A 1 340 PHE 340 340 340 PHE PHE B . n A 1 341 ILE 341 341 341 ILE ILE B . n A 1 342 GLU 342 342 ? ? ? B . n A 1 343 ALA 343 343 ? ? ? B . n A 1 344 ILE 344 344 ? ? ? B . n A 1 345 GLY 345 345 ? ? ? B . n A 1 346 LEU 346 346 ? ? ? B . n A 1 347 ASP 347 347 ? ? ? B . n A 1 348 LYS 348 348 ? ? ? B . n A 1 349 PHE 349 349 ? ? ? B . n A 1 350 PHE 350 350 ? ? ? B . n A 1 351 ASP 351 351 ? ? ? B . n A 1 352 THR 352 352 ? ? ? B . n B 2 1 DG 1 1 1 DG DG P . n B 2 2 DG 2 2 2 DG DG P . n B 2 3 DG 3 3 3 DG DG P . n B 2 4 DG 4 4 4 DG DG P . n B 2 5 DG 5 5 5 DG DG P . n B 2 6 DA 6 6 6 DA DA P . n B 2 7 DA 7 7 7 DA DA P . n B 2 8 DG 8 8 8 DG DG P . n B 2 9 DG 9 9 9 DG DG P . n B 2 10 DA 10 10 10 DA DA P . n B 2 11 DA 11 11 11 DA DA P . n B 2 12 DA 12 12 12 DA DA P . n B 2 13 DG 13 13 13 DG DG P . n C 3 1 DT 1 0 ? ? ? T . n C 3 2 DC 2 1 ? ? ? T . n C 3 3 DT 3 2 ? ? ? T . n C 3 4 DG 4 3 3 DG DG T . n C 3 5 DG 5 4 4 DG DG T . n C 3 6 DC 6 5 5 DC DC T . n C 3 7 DT 7 6 6 DT DT T . n C 3 8 DT 8 7 7 DT DT T . n C 3 9 DT 9 8 8 DT DT T . n C 3 10 DC 10 9 9 DC DC T . n C 3 11 DC 11 10 10 DC DC T . n C 3 12 DT 12 11 11 DT DT T . n C 3 13 DT 13 12 12 DT DT T . n C 3 14 DC 14 13 13 DC DC T . n C 3 15 DC 15 14 14 DC DC T . n C 3 16 DC 16 15 15 DC DC T . n C 3 17 DC 17 16 16 DC DC T . n C 3 18 DC 18 17 17 DC DC T . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CTP 1 2001 2001 CTP CTP B . E 5 CA 1 353 353 CA CA B . F 5 CA 1 354 354 CA CA B . G 5 CA 1 355 355 CA CA B . H 5 CA 1 356 356 CA CA B . I 6 GOL 1 357 357 GOL GOL B . J 6 GOL 1 14 14 GOL GOL P . K 6 GOL 1 15 15 GOL GOL P . L 7 CPT 1 1004 1004 CPT CPT T . M 8 HOH 1 358 358 HOH HOH B . M 8 HOH 2 359 359 HOH HOH B . M 8 HOH 3 360 360 HOH HOH B . M 8 HOH 4 361 361 HOH HOH B . M 8 HOH 5 362 362 HOH HOH B . M 8 HOH 6 363 363 HOH HOH B . M 8 HOH 7 364 364 HOH HOH B . M 8 HOH 8 365 365 HOH HOH B . M 8 HOH 9 366 366 HOH HOH B . M 8 HOH 10 367 367 HOH HOH B . M 8 HOH 11 368 368 HOH HOH B . M 8 HOH 12 369 369 HOH HOH B . M 8 HOH 13 370 370 HOH HOH B . M 8 HOH 14 371 371 HOH HOH B . M 8 HOH 15 372 372 HOH HOH B . M 8 HOH 16 373 373 HOH HOH B . M 8 HOH 17 374 374 HOH HOH B . M 8 HOH 18 375 375 HOH HOH B . M 8 HOH 19 376 376 HOH HOH B . M 8 HOH 20 377 377 HOH HOH B . M 8 HOH 21 378 378 HOH HOH B . M 8 HOH 22 379 379 HOH HOH B . M 8 HOH 23 380 380 HOH HOH B . M 8 HOH 24 381 381 HOH HOH B . M 8 HOH 25 382 382 HOH HOH B . M 8 HOH 26 383 383 HOH HOH B . M 8 HOH 27 384 384 HOH HOH B . M 8 HOH 28 385 385 HOH HOH B . M 8 HOH 29 386 386 HOH HOH B . M 8 HOH 30 387 387 HOH HOH B . M 8 HOH 31 388 388 HOH HOH B . M 8 HOH 32 389 389 HOH HOH B . M 8 HOH 33 390 390 HOH HOH B . N 8 HOH 1 19 19 HOH HOH P . N 8 HOH 2 28 28 HOH HOH P . N 8 HOH 3 35 35 HOH HOH P . O 8 HOH 1 18 18 HOH HOH T . O 8 HOH 2 22 22 HOH HOH T . O 8 HOH 3 29 29 HOH HOH T . O 8 HOH 4 31 31 HOH HOH T . O 8 HOH 5 39 39 HOH HOH T . O 8 HOH 6 40 40 HOH HOH T . O 8 HOH 7 48 48 HOH HOH T . O 8 HOH 8 57 57 HOH HOH T . O 8 HOH 9 58 58 HOH HOH T . O 8 HOH 10 84 84 HOH HOH T . O 8 HOH 11 93 93 HOH HOH T . O 8 HOH 12 94 94 HOH HOH T . O 8 HOH 13 391 391 HOH HOH T . O 8 HOH 14 392 392 HOH HOH T . O 8 HOH 15 393 393 HOH HOH T . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 P DG 13 ? "O5'" ? B DG 13 "O5'" 2 1 Y 1 P DG 13 ? "C5'" ? B DG 13 "C5'" 3 1 Y 1 P DG 13 ? "C4'" ? B DG 13 "C4'" 4 1 Y 1 P DG 13 ? "O4'" ? B DG 13 "O4'" 5 1 Y 1 P DG 13 ? "C3'" ? B DG 13 "C3'" 6 1 Y 1 P DG 13 ? "O3'" ? B DG 13 "O3'" 7 1 Y 1 P DG 13 ? "C2'" ? B DG 13 "C2'" 8 1 Y 1 P DG 13 ? "C1'" ? B DG 13 "C1'" 9 1 Y 1 P DG 13 ? N9 ? B DG 13 N9 10 1 Y 1 P DG 13 ? C8 ? B DG 13 C8 11 1 Y 1 P DG 13 ? N7 ? B DG 13 N7 12 1 Y 1 P DG 13 ? C5 ? B DG 13 C5 13 1 Y 1 P DG 13 ? C6 ? B DG 13 C6 14 1 Y 1 P DG 13 ? O6 ? B DG 13 O6 15 1 Y 1 P DG 13 ? N1 ? B DG 13 N1 16 1 Y 1 P DG 13 ? C2 ? B DG 13 C2 17 1 Y 1 P DG 13 ? N2 ? B DG 13 N2 18 1 Y 1 P DG 13 ? N3 ? B DG 13 N3 19 1 Y 1 P DG 13 ? C4 ? B DG 13 C4 20 1 Y 1 T DC 5 ? P ? C DC 6 P 21 1 N 1 B CTP 2001 ? "O2'" ? D CTP 1 "O2'" # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns-online.org/ Fortran_77 ? 4 PDB_EXTRACT 3.100 'Jan. 22, 2010' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 6 CNS . ? ? ? ? phasing ? ? ? # _cell.entry_id 3M9M _cell.length_a 98.576 _cell.length_b 101.193 _cell.length_c 52.418 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3M9M _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3M9M _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.63 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 53.18 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'hanging drop' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '0.2M calcium acetate, 5% glycerol, 15% PEG 3350, 200mM NaCl, pH 7.5, hanging drop, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC Q315' _diffrn_detector.pdbx_collection_date 2008-03-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Cryo-Cooled Si(111) double crystal' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0781 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.pdbx_wavelength_list 1.0781 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-C # _reflns.entry_id 3M9M _reflns.d_resolution_high 2.900 _reflns.d_resolution_low 50.000 _reflns.number_obs 12009 _reflns.pdbx_Rmerge_I_obs 0.061 _reflns.pdbx_netI_over_sigmaI 10.700 _reflns.pdbx_chi_squared 1.161 _reflns.pdbx_redundancy 3.500 _reflns.percent_possible_obs 98.600 _reflns.observed_criterion_sigma_F 1 _reflns.observed_criterion_sigma_I 1 _reflns.number_all 12180 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 2.90 3.00 ? ? ? 0.670 ? ? 1.081 3.40 ? 1166 99.40 ? 1 3.00 3.12 ? ? ? 0.434 ? ? 1.249 3.40 ? 1182 99.20 ? 2 3.12 3.27 ? ? ? 0.229 ? ? 1.092 3.50 ? 1214 99.20 ? 3 3.27 3.44 ? ? ? 0.146 ? ? 1.066 3.50 ? 1157 99.60 ? 4 3.44 3.65 ? ? ? 0.105 ? ? 1.074 3.50 ? 1192 98.80 ? 5 3.65 3.94 ? ? ? 0.073 ? ? 1.089 3.50 ? 1193 99.00 ? 6 3.94 4.33 ? ? ? 0.049 ? ? 1.130 3.50 ? 1194 99.20 ? 7 4.33 4.96 ? ? ? 0.047 ? ? 1.431 3.50 ? 1216 98.90 ? 8 4.96 6.24 ? ? ? 0.044 ? ? 1.352 3.40 ? 1232 98.60 ? 9 6.24 50.00 ? ? ? 0.023 ? ? 1.035 3.30 ? 1263 95.00 ? 10 # _refine.entry_id 3M9M _refine.ls_d_res_high 2.900 _refine.ls_d_res_low 45.00 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.500 _refine.ls_number_reflns_obs 11987 _refine.ls_number_reflns_all 12007 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details Random _refine.details ? _refine.ls_R_factor_all 0.286 _refine.ls_R_factor_obs 0.286 _refine.ls_R_factor_R_work 0.285 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.309 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 6.700 _refine.ls_number_reflns_R_free 818 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 63.213 _refine.solvent_model_param_bsol 32.470 _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -11.092 _refine.aniso_B[2][2] 3.739 _refine.aniso_B[3][3] 7.353 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 1JX4' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.748 _refine.B_iso_max 137.45 _refine.B_iso_min 17.73 _refine.occupancy_max 1.00 _refine.occupancy_min 1.00 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2743 _refine_hist.pdbx_number_atoms_nucleic_acid 554 _refine_hist.pdbx_number_atoms_ligand 53 _refine_hist.number_atoms_solvent 51 _refine_hist.number_atoms_total 3401 _refine_hist.d_res_high 2.900 _refine_hist.d_res_low 45.00 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d ? 0.006 1.500 ? 'X-RAY DIFFRACTION' ? c_angle_deg ? 1.510 2.000 ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? 3.452 1.500 ? 'X-RAY DIFFRACTION' ? c_scbond_it ? 3.918 2.000 ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? 5.641 2.000 ? 'X-RAY DIFFRACTION' ? c_scangle_it ? 6.451 2.500 ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param ? 'X-RAY DIFFRACTION' 2 dna-rna_jw_020210_gg1.param ? 'X-RAY DIFFRACTION' 3 ion.param ? 'X-RAY DIFFRACTION' 4 water_rep.param ? 'X-RAY DIFFRACTION' 5 ctp_par_121707.txt ? 'X-RAY DIFFRACTION' 6 gol_xplor_par.txt ? 'X-RAY DIFFRACTION' # _struct.entry_id 3M9M _struct.title 'Crystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesion' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3M9M _struct_keywords.text ;Dpo4, translesion DNA synthesis, TLS, cisplatin, Y-family DNA polymerase, protein-DNA complex, DNA, DNA damage, DNA repair, DNA replication, DNA-binding, DNA-directed DNA polymerase, Magnesium, Metal-binding, Mutator protein, Nucleotidyltransferase, Transferase, Transferase-DNA complex ; _struct_keywords.pdbx_keywords Transferase/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 6 ? J N N 6 ? K N N 6 ? L N N 7 ? M N N 8 ? N N N 8 ? O N N 8 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP DPO42_SULSO Q97W02 1 ;MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ KILEEDERKIRRIGVRFSKFIEAIGLDKFFDT ; 1 ? 2 PDB 3M9M 3M9M 2 ? ? ? 3 PDB 3M9M 3M9M 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3M9M B 1 ? 352 ? Q97W02 1 ? 352 ? 1 352 2 2 3M9M P 1 ? 13 ? 3M9M 1 ? 13 ? 1 13 3 3 3M9M T 1 ? 18 ? 3M9M 0 ? 17 ? 0 17 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5760 ? 1 MORE -89 ? 1 'SSA (A^2)' 20120 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 10 ? VAL A 18 ? TYR B 10 VAL B 18 1 ? 9 HELX_P HELX_P2 2 ASN A 20 ? LYS A 24 ? ASN B 20 LYS B 24 5 ? 5 HELX_P HELX_P3 3 ASN A 47 ? LYS A 52 ? ASN B 47 LYS B 52 1 ? 6 HELX_P HELX_P4 4 PRO A 60 ? LEU A 68 ? PRO B 60 LEU B 68 1 ? 9 HELX_P HELX_P5 5 ARG A 77 ? ARG A 93 ? ARG B 77 ARG B 93 1 ? 17 HELX_P HELX_P6 6 ASP A 117 ? LYS A 137 ? ASP B 117 LYS B 137 1 ? 21 HELX_P HELX_P7 7 ASN A 147 ? LYS A 159 ? ASN B 147 LYS B 159 1 ? 13 HELX_P HELX_P8 8 ASP A 167 ? LEU A 178 ? ASP B 167 LEU B 178 1 ? 12 HELX_P HELX_P9 9 ASP A 179 ? VAL A 183 ? ASP B 179 VAL B 183 5 ? 5 HELX_P HELX_P10 10 GLY A 187 ? LYS A 196 ? GLY B 187 LYS B 196 1 ? 10 HELX_P HELX_P11 11 LYS A 201 ? LEU A 206 ? LYS B 201 LEU B 206 5 ? 6 HELX_P HELX_P12 12 PHE A 210 ? GLY A 215 ? PHE B 210 GLY B 215 1 ? 6 HELX_P HELX_P13 13 GLY A 218 ? ARG A 230 ? GLY B 218 ARG B 230 1 ? 13 HELX_P HELX_P14 14 ASN A 257 ? ASP A 277 ? ASN B 257 ASP B 277 1 ? 21 HELX_P HELX_P15 15 SER A 307 ? ASP A 326 ? SER B 307 ASP B 326 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 7 OD1 ? ? ? 1_555 F CA . CA ? ? B ASP 7 B CA 354 1_555 ? ? ? ? ? ? ? 2.328 ? ? metalc2 metalc ? ? A PHE 8 O ? ? ? 1_555 F CA . CA ? ? B PHE 8 B CA 354 1_555 ? ? ? ? ? ? ? 2.491 ? ? metalc3 metalc ? ? A ASP 105 OD1 ? ? ? 1_555 E CA . CA ? ? B ASP 105 B CA 353 1_555 ? ? ? ? ? ? ? 3.087 ? ? metalc4 metalc ? ? A ASP 105 OD2 ? ? ? 1_555 F CA . CA ? ? B ASP 105 B CA 354 1_555 ? ? ? ? ? ? ? 2.569 ? ? metalc5 metalc ? ? A GLU 106 OE2 ? ? ? 1_555 E CA . CA ? ? B GLU 106 B CA 353 1_555 ? ? ? ? ? ? ? 2.763 ? ? metalc6 metalc ? ? A ALA 181 O ? ? ? 1_555 G CA . CA ? ? B ALA 181 B CA 355 1_555 ? ? ? ? ? ? ? 2.739 ? ? metalc7 metalc ? ? A ILE 186 O ? ? ? 1_555 G CA . CA ? ? B ILE 186 B CA 355 1_555 ? ? ? ? ? ? ? 2.817 ? ? metalc8 metalc ? ? E CA . CA ? ? ? 1_555 D CTP . "O5'" ? ? B CA 353 B CTP 2001 1_555 ? ? ? ? ? ? ? 2.990 ? ? metalc9 metalc ? ? F CA . CA ? ? ? 1_555 D CTP . O2B ? ? B CA 354 B CTP 2001 1_555 ? ? ? ? ? ? ? 2.533 ? ? metalc10 metalc ? ? F CA . CA ? ? ? 1_555 D CTP . O1A ? ? B CA 354 B CTP 2001 1_555 ? ? ? ? ? ? ? 3.142 ? ? metalc11 metalc ? ? C DG 4 N7 ? ? ? 1_555 L CPT . PT1 ? ? T DG 3 T CPT 1004 1_555 ? ? ? ? ? ? ? 1.973 ? ? metalc12 metalc ? ? C DG 5 N7 ? ? ? 1_555 L CPT . PT1 ? ? T DG 4 T CPT 1004 1_555 ? ? ? ? ? ? ? 1.937 ? ? hydrog1 hydrog ? ? B DG 1 N1 ? ? ? 1_555 C DC 18 N3 ? ? P DG 1 T DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 1 N2 ? ? ? 1_555 C DC 18 O2 ? ? P DG 1 T DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 1 O6 ? ? ? 1_555 C DC 18 N4 ? ? P DG 1 T DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 2 N1 ? ? ? 1_555 C DC 17 N3 ? ? P DG 2 T DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 2 N2 ? ? ? 1_555 C DC 17 O2 ? ? P DG 2 T DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DC 17 N4 ? ? P DG 2 T DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 16 N3 ? ? P DG 3 T DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 16 O2 ? ? P DG 3 T DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 16 N4 ? ? P DG 3 T DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 15 N3 ? ? P DG 4 T DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 15 O2 ? ? P DG 4 T DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 15 N4 ? ? P DG 4 T DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DG 5 N1 ? ? ? 1_555 C DC 14 N3 ? ? P DG 5 T DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DG 5 N2 ? ? ? 1_555 C DC 14 O2 ? ? P DG 5 T DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DG 5 O6 ? ? ? 1_555 C DC 14 N4 ? ? P DG 5 T DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DA 6 N1 ? ? ? 1_555 C DT 13 N3 ? ? P DA 6 T DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DA 6 N6 ? ? ? 1_555 C DT 13 O4 ? ? P DA 6 T DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DA 7 N1 ? ? ? 1_555 C DT 12 N3 ? ? P DA 7 T DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DA 7 N6 ? ? ? 1_555 C DT 12 O4 ? ? P DA 7 T DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 11 N3 ? ? P DG 8 T DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 11 O2 ? ? P DG 8 T DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 11 N4 ? ? P DG 8 T DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 9 N1 ? ? ? 1_555 C DC 10 N3 ? ? P DG 9 T DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 9 N2 ? ? ? 1_555 C DC 10 O2 ? ? P DG 9 T DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 9 O6 ? ? ? 1_555 C DC 10 N4 ? ? P DG 9 T DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DA 10 N1 ? ? ? 1_555 C DT 9 N3 ? ? P DA 10 T DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DA 10 N6 ? ? ? 1_555 C DT 9 O4 ? ? P DA 10 T DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DA 11 N1 ? ? ? 1_555 C DT 8 N3 ? ? P DA 11 T DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DA 11 N6 ? ? ? 1_555 C DT 8 O4 ? ? P DA 11 T DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DA 12 N1 ? ? ? 1_555 C DT 7 N3 ? ? P DA 12 T DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DA 12 N6 ? ? ? 1_555 C DT 7 O4 ? ? P DA 12 T DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 7 ? B ASP 7 ? 1_555 CA ? F CA . ? B CA 354 ? 1_555 O ? A PHE 8 ? B PHE 8 ? 1_555 83.4 ? 2 OD1 ? A ASP 7 ? B ASP 7 ? 1_555 CA ? F CA . ? B CA 354 ? 1_555 OD2 ? A ASP 105 ? B ASP 105 ? 1_555 116.0 ? 3 O ? A PHE 8 ? B PHE 8 ? 1_555 CA ? F CA . ? B CA 354 ? 1_555 OD2 ? A ASP 105 ? B ASP 105 ? 1_555 82.4 ? 4 OD1 ? A ASP 7 ? B ASP 7 ? 1_555 CA ? F CA . ? B CA 354 ? 1_555 O2B ? D CTP . ? B CTP 2001 ? 1_555 153.1 ? 5 O ? A PHE 8 ? B PHE 8 ? 1_555 CA ? F CA . ? B CA 354 ? 1_555 O2B ? D CTP . ? B CTP 2001 ? 1_555 92.5 ? 6 OD2 ? A ASP 105 ? B ASP 105 ? 1_555 CA ? F CA . ? B CA 354 ? 1_555 O2B ? D CTP . ? B CTP 2001 ? 1_555 89.5 ? 7 OD1 ? A ASP 7 ? B ASP 7 ? 1_555 CA ? F CA . ? B CA 354 ? 1_555 O1A ? D CTP . ? B CTP 2001 ? 1_555 109.6 ? 8 O ? A PHE 8 ? B PHE 8 ? 1_555 CA ? F CA . ? B CA 354 ? 1_555 O1A ? D CTP . ? B CTP 2001 ? 1_555 155.3 ? 9 OD2 ? A ASP 105 ? B ASP 105 ? 1_555 CA ? F CA . ? B CA 354 ? 1_555 O1A ? D CTP . ? B CTP 2001 ? 1_555 108.6 ? 10 O2B ? D CTP . ? B CTP 2001 ? 1_555 CA ? F CA . ? B CA 354 ? 1_555 O1A ? D CTP . ? B CTP 2001 ? 1_555 66.3 ? 11 OD1 ? A ASP 105 ? B ASP 105 ? 1_555 CA ? E CA . ? B CA 353 ? 1_555 OE2 ? A GLU 106 ? B GLU 106 ? 1_555 108.6 ? 12 OD1 ? A ASP 105 ? B ASP 105 ? 1_555 CA ? E CA . ? B CA 353 ? 1_555 "O5'" ? D CTP . ? B CTP 2001 ? 1_555 89.1 ? 13 OE2 ? A GLU 106 ? B GLU 106 ? 1_555 CA ? E CA . ? B CA 353 ? 1_555 "O5'" ? D CTP . ? B CTP 2001 ? 1_555 161.5 ? 14 O ? A ALA 181 ? B ALA 181 ? 1_555 CA ? G CA . ? B CA 355 ? 1_555 O ? A ILE 186 ? B ILE 186 ? 1_555 75.8 ? 15 N7 ? C DG 4 ? T DG 3 ? 1_555 PT1 ? L CPT . ? T CPT 1004 ? 1_555 N1 ? L CPT . ? T CPT 1004 ? 1_555 175.0 ? 16 N7 ? C DG 4 ? T DG 3 ? 1_555 PT1 ? L CPT . ? T CPT 1004 ? 1_555 N2 ? L CPT . ? T CPT 1004 ? 1_555 86.5 ? 17 N1 ? L CPT . ? T CPT 1004 ? 1_555 PT1 ? L CPT . ? T CPT 1004 ? 1_555 N2 ? L CPT . ? T CPT 1004 ? 1_555 89.2 ? 18 N7 ? C DG 4 ? T DG 3 ? 1_555 PT1 ? L CPT . ? T CPT 1004 ? 1_555 N7 ? C DG 5 ? T DG 4 ? 1_555 99.5 ? 19 N1 ? L CPT . ? T CPT 1004 ? 1_555 PT1 ? L CPT . ? T CPT 1004 ? 1_555 N7 ? C DG 5 ? T DG 4 ? 1_555 84.7 ? 20 N2 ? L CPT . ? T CPT 1004 ? 1_555 PT1 ? L CPT . ? T CPT 1004 ? 1_555 N7 ? C DG 5 ? T DG 4 ? 1_555 172.8 ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 159 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 159 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 160 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 160 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.00 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel B 1 2 ? anti-parallel B 2 3 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 99 ? SER A 103 ? ILE B 99 SER B 103 A 2 GLU A 106 ? ASP A 110 ? GLU B 106 ASP B 110 A 3 VAL A 3 ? PHE A 8 ? VAL B 3 PHE B 8 A 4 VAL A 140 ? SER A 145 ? VAL B 140 SER B 145 A 5 ILE A 163 ? VAL A 165 ? ILE B 163 VAL B 165 B 1 GLY A 41 ? ALA A 46 ? GLY B 41 ALA B 46 B 2 VAL A 28 ? PHE A 33 ? VAL B 28 PHE B 33 B 3 VAL A 72 ? PRO A 75 ? VAL B 72 PRO B 75 C 1 ILE A 245 ? SER A 255 ? ILE B 245 SER B 255 C 2 ILE A 330 ? PHE A 340 ? ILE B 330 PHE B 340 C 3 PRO A 281 ? THR A 290 ? PRO B 281 THR B 290 C 4 ILE A 295 ? THR A 301 ? ILE B 295 THR B 301 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 100 ? N GLU B 100 O TYR A 108 ? O TYR B 108 A 2 3 O LEU A 109 ? O LEU B 109 N LEU A 4 ? N LEU B 4 A 3 4 N VAL A 3 ? N VAL B 3 O SER A 145 ? O SER B 145 A 4 5 N ILE A 144 ? N ILE B 144 O LYS A 164 ? O LYS B 164 B 1 2 O ALA A 42 ? O ALA B 42 N VAL A 32 ? N VAL B 32 B 2 3 N CYS A 31 ? N CYS B 31 O LEU A 74 ? O LEU B 74 C 1 2 N VAL A 249 ? N VAL B 249 O ILE A 333 ? O ILE B 333 C 2 3 O SER A 338 ? O SER B 338 N ALA A 283 ? N ALA B 283 C 3 4 N VAL A 286 ? N VAL B 286 O ARG A 298 ? O ARG B 298 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B CTP 2001 ? 17 'BINDING SITE FOR RESIDUE CTP B 2001' AC2 Software B CA 353 ? 4 'BINDING SITE FOR RESIDUE CA B 353' AC3 Software B CA 354 ? 5 'BINDING SITE FOR RESIDUE CA B 354' AC4 Software B CA 355 ? 2 'BINDING SITE FOR RESIDUE CA B 355' AC5 Software B CA 356 ? 1 'BINDING SITE FOR RESIDUE CA B 356' AC6 Software B GOL 357 ? 2 'BINDING SITE FOR RESIDUE GOL B 357' AC7 Software P GOL 14 ? 3 'BINDING SITE FOR RESIDUE GOL P 14' AC8 Software P GOL 15 ? 3 'BINDING SITE FOR RESIDUE GOL P 15' AC9 Software T CPT 1004 ? 2 'BINDING SITE FOR RESIDUE CPT T 1004' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 17 PHE A 8 ? PHE B 8 . ? 1_555 ? 2 AC1 17 ASP A 9 ? ASP B 9 . ? 1_555 ? 3 AC1 17 TYR A 10 ? TYR B 10 . ? 1_555 ? 4 AC1 17 PHE A 11 ? PHE B 11 . ? 1_555 ? 5 AC1 17 TYR A 12 ? TYR B 12 . ? 1_555 ? 6 AC1 17 THR A 45 ? THR B 45 . ? 1_555 ? 7 AC1 17 TYR A 48 ? TYR B 48 . ? 1_555 ? 8 AC1 17 ARG A 51 ? ARG B 51 . ? 1_555 ? 9 AC1 17 ALA A 57 ? ALA B 57 . ? 1_555 ? 10 AC1 17 ASP A 105 ? ASP B 105 . ? 1_555 ? 11 AC1 17 LYS A 159 ? LYS B 159 . ? 1_555 ? 12 AC1 17 CA E . ? CA B 353 . ? 1_555 ? 13 AC1 17 CA F . ? CA B 354 . ? 1_555 ? 14 AC1 17 HOH M . ? HOH B 377 . ? 1_555 ? 15 AC1 17 HOH M . ? HOH B 378 . ? 1_555 ? 16 AC1 17 HOH M . ? HOH B 379 . ? 1_555 ? 17 AC1 17 DG C 5 ? DG T 4 . ? 1_555 ? 18 AC2 4 ASP A 105 ? ASP B 105 . ? 1_555 ? 19 AC2 4 GLU A 106 ? GLU B 106 . ? 1_555 ? 20 AC2 4 CA F . ? CA B 354 . ? 1_555 ? 21 AC2 4 CTP D . ? CTP B 2001 . ? 1_555 ? 22 AC3 5 ASP A 7 ? ASP B 7 . ? 1_555 ? 23 AC3 5 PHE A 8 ? PHE B 8 . ? 1_555 ? 24 AC3 5 ASP A 105 ? ASP B 105 . ? 1_555 ? 25 AC3 5 CA E . ? CA B 353 . ? 1_555 ? 26 AC3 5 CTP D . ? CTP B 2001 . ? 1_555 ? 27 AC4 2 ALA A 181 ? ALA B 181 . ? 1_555 ? 28 AC4 2 ILE A 186 ? ILE B 186 . ? 1_555 ? 29 AC5 1 ASP A 156 ? ASP B 156 . ? 1_555 ? 30 AC6 2 GLY A 185 ? GLY B 185 . ? 1_555 ? 31 AC6 2 DC C 11 ? DC T 10 . ? 1_555 ? 32 AC7 3 DG B 2 ? DG P 2 . ? 1_555 ? 33 AC7 3 DG B 3 ? DG P 3 . ? 1_555 ? 34 AC7 3 DG B 4 ? DG P 4 . ? 1_555 ? 35 AC8 3 DA B 6 ? DA P 6 . ? 1_555 ? 36 AC8 3 DA B 7 ? DA P 7 . ? 1_555 ? 37 AC8 3 DC C 14 ? DC T 13 . ? 1_555 ? 38 AC9 2 DG C 4 ? DG T 3 . ? 1_555 ? 39 AC9 2 DG C 5 ? DG T 4 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C2 T DG 3 ? ? N3 T DG 3 ? ? 1.375 1.323 0.052 0.008 N 2 1 N3 T DG 3 ? ? C4 T DG 3 ? ? 1.431 1.350 0.081 0.007 N 3 1 N7 T DG 3 ? ? C8 T DG 3 ? ? 1.210 1.305 -0.095 0.006 N 4 1 N9 T DG 3 ? ? C4 T DG 3 ? ? 1.492 1.375 0.117 0.008 N 5 1 "C1'" T DG 4 ? ? N9 T DG 4 ? ? 1.609 1.488 0.121 0.013 N 6 1 C5 T DG 4 ? ? C6 T DG 4 ? ? 1.319 1.419 -0.100 0.010 N 7 1 N7 T DG 4 ? ? C8 T DG 4 ? ? 1.385 1.305 0.080 0.006 N 8 1 C8 T DG 4 ? ? N9 T DG 4 ? ? 1.480 1.374 0.106 0.007 N 9 1 N9 T DG 4 ? ? C4 T DG 4 ? ? 1.259 1.375 -0.116 0.008 N 10 1 "C5'" T DC 5 ? ? "C4'" T DC 5 ? ? 1.597 1.512 0.085 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O3'" P DA 12 ? ? P P DG 13 ? ? OP2 P DG 13 ? ? 117.48 110.50 6.98 1.10 Y 2 1 "O4'" T DG 3 ? ? "C1'" T DG 3 ? ? N9 T DG 3 ? ? 95.27 108.00 -12.73 0.70 N 3 1 C2 T DG 3 ? ? N3 T DG 3 ? ? C4 T DG 3 ? ? 115.57 111.90 3.67 0.50 N 4 1 N3 T DG 3 ? ? C4 T DG 3 ? ? C5 T DG 3 ? ? 123.22 128.60 -5.38 0.50 N 5 1 C5 T DG 3 ? ? C6 T DG 3 ? ? N1 T DG 3 ? ? 115.56 111.50 4.06 0.50 N 6 1 N7 T DG 3 ? ? C8 T DG 3 ? ? N9 T DG 3 ? ? 116.14 113.10 3.04 0.50 N 7 1 N9 T DG 3 ? ? C4 T DG 3 ? ? C5 T DG 3 ? ? 101.51 105.40 -3.89 0.40 N 8 1 N3 T DG 3 ? ? C4 T DG 3 ? ? N9 T DG 3 ? ? 135.27 126.00 9.27 0.60 N 9 1 C8 T DG 3 ? ? N9 T DG 3 ? ? "C1'" T DG 3 ? ? 119.07 127.00 -7.93 1.30 N 10 1 "O4'" T DG 4 ? ? "C1'" T DG 4 ? ? N9 T DG 4 ? ? 111.89 108.30 3.59 0.30 N 11 1 C4 T DG 4 ? ? C5 T DG 4 ? ? N7 T DG 4 ? ? 113.80 110.80 3.00 0.40 N 12 1 N7 T DG 4 ? ? C8 T DG 4 ? ? N9 T DG 4 ? ? 109.13 113.10 -3.97 0.50 N 13 1 C6 T DG 4 ? ? C5 T DG 4 ? ? N7 T DG 4 ? ? 126.46 130.40 -3.94 0.60 N 14 1 C8 T DG 4 ? ? N9 T DG 4 ? ? "C1'" T DG 4 ? ? 136.20 127.00 9.20 1.30 N 15 1 C4 T DG 4 ? ? N9 T DG 4 ? ? "C1'" T DG 4 ? ? 116.45 126.50 -10.05 1.30 N 16 1 "C3'" T DT 11 ? ? "C2'" T DT 11 ? ? "C1'" T DT 11 ? ? 96.09 102.40 -6.31 0.80 N 17 1 "O5'" T DC 16 ? ? "C5'" T DC 16 ? ? "C4'" T DC 16 ? ? 101.90 109.40 -7.50 0.80 N 18 1 "C1'" T DC 17 ? ? "O4'" T DC 17 ? ? "C4'" T DC 17 ? ? 104.03 110.10 -6.07 1.00 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR B 10 ? ? 16.53 45.98 2 1 PHE B 11 ? ? -29.71 -78.81 3 1 VAL B 15 ? ? -55.93 -2.33 4 1 ASN B 20 ? ? -164.77 70.79 5 1 PHE B 37 ? ? 156.49 159.22 6 1 ASN B 47 ? ? -46.33 167.95 7 1 LYS B 52 ? ? -48.71 -19.91 8 1 SER B 96 ? ? 170.68 141.58 9 1 ASP B 105 ? ? -151.75 35.59 10 1 ILE B 111 ? ? -105.52 46.97 11 1 ASP B 113 ? ? -142.15 17.72 12 1 SER B 145 ? ? -173.16 -168.19 13 1 ASN B 161 ? ? 35.82 57.80 14 1 ILE B 166 ? ? -115.72 76.83 15 1 VAL B 203 ? ? -49.44 -18.64 16 1 ASP B 211 ? ? -48.97 -16.12 17 1 ARG B 253 ? ? -176.14 140.87 18 1 SER B 255 ? ? 175.82 166.41 19 1 ASP B 277 ? ? 40.32 89.81 20 1 LYS B 278 ? ? 81.25 -18.17 21 1 THR B 290 ? ? -48.27 156.38 22 1 PHE B 340 ? ? -61.13 -179.41 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG T 3 ? ? 0.121 'SIDE CHAIN' 2 1 DG T 4 ? ? 0.078 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B GLU 342 ? A GLU 342 2 1 Y 1 B ALA 343 ? A ALA 343 3 1 Y 1 B ILE 344 ? A ILE 344 4 1 Y 1 B GLY 345 ? A GLY 345 5 1 Y 1 B LEU 346 ? A LEU 346 6 1 Y 1 B ASP 347 ? A ASP 347 7 1 Y 1 B LYS 348 ? A LYS 348 8 1 Y 1 B PHE 349 ? A PHE 349 9 1 Y 1 B PHE 350 ? A PHE 350 10 1 Y 1 B ASP 351 ? A ASP 351 11 1 Y 1 B THR 352 ? A THR 352 12 1 Y 1 T DT 0 ? C DT 1 13 1 Y 1 T DC 1 ? C DC 2 14 1 Y 1 T DT 2 ? C DT 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CA CA CA N N 74 CPT PT1 PT N N 75 CPT N1 N N N 76 CPT N2 N N N 77 CPT H11 H N N 78 CPT H12 H N N 79 CPT H21 H N N 80 CPT H22 H N N 81 CPT CL2 CL N N 82 CPT CL1 CL N N 83 CPT H13 H N N 84 CPT H23 H N N 85 CTP N1 N N N 86 CTP C2 C N N 87 CTP N3 N N N 88 CTP C4 C N N 89 CTP C5 C N N 90 CTP C6 C N N 91 CTP O2 O N N 92 CTP N4 N N N 93 CTP "C1'" C N R 94 CTP "C2'" C N R 95 CTP "O2'" O N N 96 CTP "C3'" C N S 97 CTP "C4'" C N R 98 CTP "O4'" O N N 99 CTP "O3'" O N N 100 CTP "C5'" C N N 101 CTP "O5'" O N N 102 CTP PA P N S 103 CTP O1A O N N 104 CTP O2A O N N 105 CTP O3A O N N 106 CTP PB P N R 107 CTP O1B O N N 108 CTP O2B O N N 109 CTP O3B O N N 110 CTP PG P N N 111 CTP O1G O N N 112 CTP O2G O N N 113 CTP O3G O N N 114 CTP H5 H N N 115 CTP H6 H N N 116 CTP HN41 H N N 117 CTP HN42 H N N 118 CTP "H1'" H N N 119 CTP "H2'" H N N 120 CTP "HO2'" H N N 121 CTP "H3'" H N N 122 CTP "H4'" H N N 123 CTP "HO3'" H N N 124 CTP "H5'1" H N N 125 CTP "H5'2" H N N 126 CTP HOA2 H N N 127 CTP HOB2 H N N 128 CTP HOG2 H N N 129 CTP HOG3 H N N 130 CYS N N N N 131 CYS CA C N R 132 CYS C C N N 133 CYS O O N N 134 CYS CB C N N 135 CYS SG S N N 136 CYS OXT O N N 137 CYS H H N N 138 CYS H2 H N N 139 CYS HA H N N 140 CYS HB2 H N N 141 CYS HB3 H N N 142 CYS HG H N N 143 CYS HXT H N N 144 DA OP3 O N N 145 DA P P N N 146 DA OP1 O N N 147 DA OP2 O N N 148 DA "O5'" O N N 149 DA "C5'" C N N 150 DA "C4'" C N R 151 DA "O4'" O N N 152 DA "C3'" C N S 153 DA "O3'" O N N 154 DA "C2'" C N N 155 DA "C1'" C N R 156 DA N9 N Y N 157 DA C8 C Y N 158 DA N7 N Y N 159 DA C5 C Y N 160 DA C6 C Y N 161 DA N6 N N N 162 DA N1 N Y N 163 DA C2 C Y N 164 DA N3 N Y N 165 DA C4 C Y N 166 DA HOP3 H N N 167 DA HOP2 H N N 168 DA "H5'" H N N 169 DA "H5''" H N N 170 DA "H4'" H N N 171 DA "H3'" H N N 172 DA "HO3'" H N N 173 DA "H2'" H N N 174 DA "H2''" H N N 175 DA "H1'" H N N 176 DA H8 H N N 177 DA H61 H N N 178 DA H62 H N N 179 DA H2 H N N 180 DC OP3 O N N 181 DC P P N N 182 DC OP1 O N N 183 DC OP2 O N N 184 DC "O5'" O N N 185 DC "C5'" C N N 186 DC "C4'" C N R 187 DC "O4'" O N N 188 DC "C3'" C N S 189 DC "O3'" O N N 190 DC "C2'" C N N 191 DC "C1'" C N R 192 DC N1 N N N 193 DC C2 C N N 194 DC O2 O N N 195 DC N3 N N N 196 DC C4 C N N 197 DC N4 N N N 198 DC C5 C N N 199 DC C6 C N N 200 DC HOP3 H N N 201 DC HOP2 H N N 202 DC "H5'" H N N 203 DC "H5''" H N N 204 DC "H4'" H N N 205 DC "H3'" H N N 206 DC "HO3'" H N N 207 DC "H2'" H N N 208 DC "H2''" H N N 209 DC "H1'" H N N 210 DC H41 H N N 211 DC H42 H N N 212 DC H5 H N N 213 DC H6 H N N 214 DG OP3 O N N 215 DG P P N N 216 DG OP1 O N N 217 DG OP2 O N N 218 DG "O5'" O N N 219 DG "C5'" C N N 220 DG "C4'" C N R 221 DG "O4'" O N N 222 DG "C3'" C N S 223 DG "O3'" O N N 224 DG "C2'" C N N 225 DG "C1'" C N R 226 DG N9 N Y N 227 DG C8 C Y N 228 DG N7 N Y N 229 DG C5 C Y N 230 DG C6 C N N 231 DG O6 O N N 232 DG N1 N N N 233 DG C2 C N N 234 DG N2 N N N 235 DG N3 N N N 236 DG C4 C Y N 237 DG HOP3 H N N 238 DG HOP2 H N N 239 DG "H5'" H N N 240 DG "H5''" H N N 241 DG "H4'" H N N 242 DG "H3'" H N N 243 DG "HO3'" H N N 244 DG "H2'" H N N 245 DG "H2''" H N N 246 DG "H1'" H N N 247 DG H8 H N N 248 DG H1 H N N 249 DG H21 H N N 250 DG H22 H N N 251 DT OP3 O N N 252 DT P P N N 253 DT OP1 O N N 254 DT OP2 O N N 255 DT "O5'" O N N 256 DT "C5'" C N N 257 DT "C4'" C N R 258 DT "O4'" O N N 259 DT "C3'" C N S 260 DT "O3'" O N N 261 DT "C2'" C N N 262 DT "C1'" C N R 263 DT N1 N N N 264 DT C2 C N N 265 DT O2 O N N 266 DT N3 N N N 267 DT C4 C N N 268 DT O4 O N N 269 DT C5 C N N 270 DT C7 C N N 271 DT C6 C N N 272 DT HOP3 H N N 273 DT HOP2 H N N 274 DT "H5'" H N N 275 DT "H5''" H N N 276 DT "H4'" H N N 277 DT "H3'" H N N 278 DT "HO3'" H N N 279 DT "H2'" H N N 280 DT "H2''" H N N 281 DT "H1'" H N N 282 DT H3 H N N 283 DT H71 H N N 284 DT H72 H N N 285 DT H73 H N N 286 DT H6 H N N 287 GLN N N N N 288 GLN CA C N S 289 GLN C C N N 290 GLN O O N N 291 GLN CB C N N 292 GLN CG C N N 293 GLN CD C N N 294 GLN OE1 O N N 295 GLN NE2 N N N 296 GLN OXT O N N 297 GLN H H N N 298 GLN H2 H N N 299 GLN HA H N N 300 GLN HB2 H N N 301 GLN HB3 H N N 302 GLN HG2 H N N 303 GLN HG3 H N N 304 GLN HE21 H N N 305 GLN HE22 H N N 306 GLN HXT H N N 307 GLU N N N N 308 GLU CA C N S 309 GLU C C N N 310 GLU O O N N 311 GLU CB C N N 312 GLU CG C N N 313 GLU CD C N N 314 GLU OE1 O N N 315 GLU OE2 O N N 316 GLU OXT O N N 317 GLU H H N N 318 GLU H2 H N N 319 GLU HA H N N 320 GLU HB2 H N N 321 GLU HB3 H N N 322 GLU HG2 H N N 323 GLU HG3 H N N 324 GLU HE2 H N N 325 GLU HXT H N N 326 GLY N N N N 327 GLY CA C N N 328 GLY C C N N 329 GLY O O N N 330 GLY OXT O N N 331 GLY H H N N 332 GLY H2 H N N 333 GLY HA2 H N N 334 GLY HA3 H N N 335 GLY HXT H N N 336 GOL C1 C N N 337 GOL O1 O N N 338 GOL C2 C N N 339 GOL O2 O N N 340 GOL C3 C N N 341 GOL O3 O N N 342 GOL H11 H N N 343 GOL H12 H N N 344 GOL HO1 H N N 345 GOL H2 H N N 346 GOL HO2 H N N 347 GOL H31 H N N 348 GOL H32 H N N 349 GOL HO3 H N N 350 HIS N N N N 351 HIS CA C N S 352 HIS C C N N 353 HIS O O N N 354 HIS CB C N N 355 HIS CG C Y N 356 HIS ND1 N Y N 357 HIS CD2 C Y N 358 HIS CE1 C Y N 359 HIS NE2 N Y N 360 HIS OXT O N N 361 HIS H H N N 362 HIS H2 H N N 363 HIS HA H N N 364 HIS HB2 H N N 365 HIS HB3 H N N 366 HIS HD1 H N N 367 HIS HD2 H N N 368 HIS HE1 H N N 369 HIS HE2 H N N 370 HIS HXT H N N 371 HOH O O N N 372 HOH H1 H N N 373 HOH H2 H N N 374 ILE N N N N 375 ILE CA C N S 376 ILE C C N N 377 ILE O O N N 378 ILE CB C N S 379 ILE CG1 C N N 380 ILE CG2 C N N 381 ILE CD1 C N N 382 ILE OXT O N N 383 ILE H H N N 384 ILE H2 H N N 385 ILE HA H N N 386 ILE HB H N N 387 ILE HG12 H N N 388 ILE HG13 H N N 389 ILE HG21 H N N 390 ILE HG22 H N N 391 ILE HG23 H N N 392 ILE HD11 H N N 393 ILE HD12 H N N 394 ILE HD13 H N N 395 ILE HXT H N N 396 LEU N N N N 397 LEU CA C N S 398 LEU C C N N 399 LEU O O N N 400 LEU CB C N N 401 LEU CG C N N 402 LEU CD1 C N N 403 LEU CD2 C N N 404 LEU OXT O N N 405 LEU H H N N 406 LEU H2 H N N 407 LEU HA H N N 408 LEU HB2 H N N 409 LEU HB3 H N N 410 LEU HG H N N 411 LEU HD11 H N N 412 LEU HD12 H N N 413 LEU HD13 H N N 414 LEU HD21 H N N 415 LEU HD22 H N N 416 LEU HD23 H N N 417 LEU HXT H N N 418 LYS N N N N 419 LYS CA C N S 420 LYS C C N N 421 LYS O O N N 422 LYS CB C N N 423 LYS CG C N N 424 LYS CD C N N 425 LYS CE C N N 426 LYS NZ N N N 427 LYS OXT O N N 428 LYS H H N N 429 LYS H2 H N N 430 LYS HA H N N 431 LYS HB2 H N N 432 LYS HB3 H N N 433 LYS HG2 H N N 434 LYS HG3 H N N 435 LYS HD2 H N N 436 LYS HD3 H N N 437 LYS HE2 H N N 438 LYS HE3 H N N 439 LYS HZ1 H N N 440 LYS HZ2 H N N 441 LYS HZ3 H N N 442 LYS HXT H N N 443 MET N N N N 444 MET CA C N S 445 MET C C N N 446 MET O O N N 447 MET CB C N N 448 MET CG C N N 449 MET SD S N N 450 MET CE C N N 451 MET OXT O N N 452 MET H H N N 453 MET H2 H N N 454 MET HA H N N 455 MET HB2 H N N 456 MET HB3 H N N 457 MET HG2 H N N 458 MET HG3 H N N 459 MET HE1 H N N 460 MET HE2 H N N 461 MET HE3 H N N 462 MET HXT H N N 463 PHE N N N N 464 PHE CA C N S 465 PHE C C N N 466 PHE O O N N 467 PHE CB C N N 468 PHE CG C Y N 469 PHE CD1 C Y N 470 PHE CD2 C Y N 471 PHE CE1 C Y N 472 PHE CE2 C Y N 473 PHE CZ C Y N 474 PHE OXT O N N 475 PHE H H N N 476 PHE H2 H N N 477 PHE HA H N N 478 PHE HB2 H N N 479 PHE HB3 H N N 480 PHE HD1 H N N 481 PHE HD2 H N N 482 PHE HE1 H N N 483 PHE HE2 H N N 484 PHE HZ H N N 485 PHE HXT H N N 486 PRO N N N N 487 PRO CA C N S 488 PRO C C N N 489 PRO O O N N 490 PRO CB C N N 491 PRO CG C N N 492 PRO CD C N N 493 PRO OXT O N N 494 PRO H H N N 495 PRO HA H N N 496 PRO HB2 H N N 497 PRO HB3 H N N 498 PRO HG2 H N N 499 PRO HG3 H N N 500 PRO HD2 H N N 501 PRO HD3 H N N 502 PRO HXT H N N 503 SER N N N N 504 SER CA C N S 505 SER C C N N 506 SER O O N N 507 SER CB C N N 508 SER OG O N N 509 SER OXT O N N 510 SER H H N N 511 SER H2 H N N 512 SER HA H N N 513 SER HB2 H N N 514 SER HB3 H N N 515 SER HG H N N 516 SER HXT H N N 517 THR N N N N 518 THR CA C N S 519 THR C C N N 520 THR O O N N 521 THR CB C N R 522 THR OG1 O N N 523 THR CG2 C N N 524 THR OXT O N N 525 THR H H N N 526 THR H2 H N N 527 THR HA H N N 528 THR HB H N N 529 THR HG1 H N N 530 THR HG21 H N N 531 THR HG22 H N N 532 THR HG23 H N N 533 THR HXT H N N 534 TYR N N N N 535 TYR CA C N S 536 TYR C C N N 537 TYR O O N N 538 TYR CB C N N 539 TYR CG C Y N 540 TYR CD1 C Y N 541 TYR CD2 C Y N 542 TYR CE1 C Y N 543 TYR CE2 C Y N 544 TYR CZ C Y N 545 TYR OH O N N 546 TYR OXT O N N 547 TYR H H N N 548 TYR H2 H N N 549 TYR HA H N N 550 TYR HB2 H N N 551 TYR HB3 H N N 552 TYR HD1 H N N 553 TYR HD2 H N N 554 TYR HE1 H N N 555 TYR HE2 H N N 556 TYR HH H N N 557 TYR HXT H N N 558 VAL N N N N 559 VAL CA C N S 560 VAL C C N N 561 VAL O O N N 562 VAL CB C N N 563 VAL CG1 C N N 564 VAL CG2 C N N 565 VAL OXT O N N 566 VAL H H N N 567 VAL H2 H N N 568 VAL HA H N N 569 VAL HB H N N 570 VAL HG11 H N N 571 VAL HG12 H N N 572 VAL HG13 H N N 573 VAL HG21 H N N 574 VAL HG22 H N N 575 VAL HG23 H N N 576 VAL HXT H N N 577 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CPT PT1 N1 sing N N 70 CPT PT1 N2 sing N N 71 CPT N1 H11 sing N N 72 CPT N1 H12 sing N N 73 CPT N1 H13 sing N N 74 CPT N2 H21 sing N N 75 CPT N2 H22 sing N N 76 CPT N2 H23 sing N N 77 CPT CL2 PT1 sing N N 78 CPT CL1 PT1 sing N N 79 CTP N1 C2 sing N N 80 CTP N1 C6 sing N N 81 CTP N1 "C1'" sing N N 82 CTP C2 N3 sing N N 83 CTP C2 O2 doub N N 84 CTP N3 C4 doub N N 85 CTP C4 C5 sing N N 86 CTP C4 N4 sing N N 87 CTP C5 C6 doub N N 88 CTP C5 H5 sing N N 89 CTP C6 H6 sing N N 90 CTP N4 HN41 sing N N 91 CTP N4 HN42 sing N N 92 CTP "C1'" "C2'" sing N N 93 CTP "C1'" "O4'" sing N N 94 CTP "C1'" "H1'" sing N N 95 CTP "C2'" "O2'" sing N N 96 CTP "C2'" "C3'" sing N N 97 CTP "C2'" "H2'" sing N N 98 CTP "O2'" "HO2'" sing N N 99 CTP "C3'" "C4'" sing N N 100 CTP "C3'" "O3'" sing N N 101 CTP "C3'" "H3'" sing N N 102 CTP "C4'" "O4'" sing N N 103 CTP "C4'" "C5'" sing N N 104 CTP "C4'" "H4'" sing N N 105 CTP "O3'" "HO3'" sing N N 106 CTP "C5'" "O5'" sing N N 107 CTP "C5'" "H5'1" sing N N 108 CTP "C5'" "H5'2" sing N N 109 CTP "O5'" PA sing N N 110 CTP PA O1A doub N N 111 CTP PA O2A sing N N 112 CTP PA O3A sing N N 113 CTP O2A HOA2 sing N N 114 CTP O3A PB sing N N 115 CTP PB O1B doub N N 116 CTP PB O2B sing N N 117 CTP PB O3B sing N N 118 CTP O2B HOB2 sing N N 119 CTP O3B PG sing N N 120 CTP PG O1G doub N N 121 CTP PG O2G sing N N 122 CTP PG O3G sing N N 123 CTP O2G HOG2 sing N N 124 CTP O3G HOG3 sing N N 125 CYS N CA sing N N 126 CYS N H sing N N 127 CYS N H2 sing N N 128 CYS CA C sing N N 129 CYS CA CB sing N N 130 CYS CA HA sing N N 131 CYS C O doub N N 132 CYS C OXT sing N N 133 CYS CB SG sing N N 134 CYS CB HB2 sing N N 135 CYS CB HB3 sing N N 136 CYS SG HG sing N N 137 CYS OXT HXT sing N N 138 DA OP3 P sing N N 139 DA OP3 HOP3 sing N N 140 DA P OP1 doub N N 141 DA P OP2 sing N N 142 DA P "O5'" sing N N 143 DA OP2 HOP2 sing N N 144 DA "O5'" "C5'" sing N N 145 DA "C5'" "C4'" sing N N 146 DA "C5'" "H5'" sing N N 147 DA "C5'" "H5''" sing N N 148 DA "C4'" "O4'" sing N N 149 DA "C4'" "C3'" sing N N 150 DA "C4'" "H4'" sing N N 151 DA "O4'" "C1'" sing N N 152 DA "C3'" "O3'" sing N N 153 DA "C3'" "C2'" sing N N 154 DA "C3'" "H3'" sing N N 155 DA "O3'" "HO3'" sing N N 156 DA "C2'" "C1'" sing N N 157 DA "C2'" "H2'" sing N N 158 DA "C2'" "H2''" sing N N 159 DA "C1'" N9 sing N N 160 DA "C1'" "H1'" sing N N 161 DA N9 C8 sing Y N 162 DA N9 C4 sing Y N 163 DA C8 N7 doub Y N 164 DA C8 H8 sing N N 165 DA N7 C5 sing Y N 166 DA C5 C6 sing Y N 167 DA C5 C4 doub Y N 168 DA C6 N6 sing N N 169 DA C6 N1 doub Y N 170 DA N6 H61 sing N N 171 DA N6 H62 sing N N 172 DA N1 C2 sing Y N 173 DA C2 N3 doub Y N 174 DA C2 H2 sing N N 175 DA N3 C4 sing Y N 176 DC OP3 P sing N N 177 DC OP3 HOP3 sing N N 178 DC P OP1 doub N N 179 DC P OP2 sing N N 180 DC P "O5'" sing N N 181 DC OP2 HOP2 sing N N 182 DC "O5'" "C5'" sing N N 183 DC "C5'" "C4'" sing N N 184 DC "C5'" "H5'" sing N N 185 DC "C5'" "H5''" sing N N 186 DC "C4'" "O4'" sing N N 187 DC "C4'" "C3'" sing N N 188 DC "C4'" "H4'" sing N N 189 DC "O4'" "C1'" sing N N 190 DC "C3'" "O3'" sing N N 191 DC "C3'" "C2'" sing N N 192 DC "C3'" "H3'" sing N N 193 DC "O3'" "HO3'" sing N N 194 DC "C2'" "C1'" sing N N 195 DC "C2'" "H2'" sing N N 196 DC "C2'" "H2''" sing N N 197 DC "C1'" N1 sing N N 198 DC "C1'" "H1'" sing N N 199 DC N1 C2 sing N N 200 DC N1 C6 sing N N 201 DC C2 O2 doub N N 202 DC C2 N3 sing N N 203 DC N3 C4 doub N N 204 DC C4 N4 sing N N 205 DC C4 C5 sing N N 206 DC N4 H41 sing N N 207 DC N4 H42 sing N N 208 DC C5 C6 doub N N 209 DC C5 H5 sing N N 210 DC C6 H6 sing N N 211 DG OP3 P sing N N 212 DG OP3 HOP3 sing N N 213 DG P OP1 doub N N 214 DG P OP2 sing N N 215 DG P "O5'" sing N N 216 DG OP2 HOP2 sing N N 217 DG "O5'" "C5'" sing N N 218 DG "C5'" "C4'" sing N N 219 DG "C5'" "H5'" sing N N 220 DG "C5'" "H5''" sing N N 221 DG "C4'" "O4'" sing N N 222 DG "C4'" "C3'" sing N N 223 DG "C4'" "H4'" sing N N 224 DG "O4'" "C1'" sing N N 225 DG "C3'" "O3'" sing N N 226 DG "C3'" "C2'" sing N N 227 DG "C3'" "H3'" sing N N 228 DG "O3'" "HO3'" sing N N 229 DG "C2'" "C1'" sing N N 230 DG "C2'" "H2'" sing N N 231 DG "C2'" "H2''" sing N N 232 DG "C1'" N9 sing N N 233 DG "C1'" "H1'" sing N N 234 DG N9 C8 sing Y N 235 DG N9 C4 sing Y N 236 DG C8 N7 doub Y N 237 DG C8 H8 sing N N 238 DG N7 C5 sing Y N 239 DG C5 C6 sing N N 240 DG C5 C4 doub Y N 241 DG C6 O6 doub N N 242 DG C6 N1 sing N N 243 DG N1 C2 sing N N 244 DG N1 H1 sing N N 245 DG C2 N2 sing N N 246 DG C2 N3 doub N N 247 DG N2 H21 sing N N 248 DG N2 H22 sing N N 249 DG N3 C4 sing N N 250 DT OP3 P sing N N 251 DT OP3 HOP3 sing N N 252 DT P OP1 doub N N 253 DT P OP2 sing N N 254 DT P "O5'" sing N N 255 DT OP2 HOP2 sing N N 256 DT "O5'" "C5'" sing N N 257 DT "C5'" "C4'" sing N N 258 DT "C5'" "H5'" sing N N 259 DT "C5'" "H5''" sing N N 260 DT "C4'" "O4'" sing N N 261 DT "C4'" "C3'" sing N N 262 DT "C4'" "H4'" sing N N 263 DT "O4'" "C1'" sing N N 264 DT "C3'" "O3'" sing N N 265 DT "C3'" "C2'" sing N N 266 DT "C3'" "H3'" sing N N 267 DT "O3'" "HO3'" sing N N 268 DT "C2'" "C1'" sing N N 269 DT "C2'" "H2'" sing N N 270 DT "C2'" "H2''" sing N N 271 DT "C1'" N1 sing N N 272 DT "C1'" "H1'" sing N N 273 DT N1 C2 sing N N 274 DT N1 C6 sing N N 275 DT C2 O2 doub N N 276 DT C2 N3 sing N N 277 DT N3 C4 sing N N 278 DT N3 H3 sing N N 279 DT C4 O4 doub N N 280 DT C4 C5 sing N N 281 DT C5 C7 sing N N 282 DT C5 C6 doub N N 283 DT C7 H71 sing N N 284 DT C7 H72 sing N N 285 DT C7 H73 sing N N 286 DT C6 H6 sing N N 287 GLN N CA sing N N 288 GLN N H sing N N 289 GLN N H2 sing N N 290 GLN CA C sing N N 291 GLN CA CB sing N N 292 GLN CA HA sing N N 293 GLN C O doub N N 294 GLN C OXT sing N N 295 GLN CB CG sing N N 296 GLN CB HB2 sing N N 297 GLN CB HB3 sing N N 298 GLN CG CD sing N N 299 GLN CG HG2 sing N N 300 GLN CG HG3 sing N N 301 GLN CD OE1 doub N N 302 GLN CD NE2 sing N N 303 GLN NE2 HE21 sing N N 304 GLN NE2 HE22 sing N N 305 GLN OXT HXT sing N N 306 GLU N CA sing N N 307 GLU N H sing N N 308 GLU N H2 sing N N 309 GLU CA C sing N N 310 GLU CA CB sing N N 311 GLU CA HA sing N N 312 GLU C O doub N N 313 GLU C OXT sing N N 314 GLU CB CG sing N N 315 GLU CB HB2 sing N N 316 GLU CB HB3 sing N N 317 GLU CG CD sing N N 318 GLU CG HG2 sing N N 319 GLU CG HG3 sing N N 320 GLU CD OE1 doub N N 321 GLU CD OE2 sing N N 322 GLU OE2 HE2 sing N N 323 GLU OXT HXT sing N N 324 GLY N CA sing N N 325 GLY N H sing N N 326 GLY N H2 sing N N 327 GLY CA C sing N N 328 GLY CA HA2 sing N N 329 GLY CA HA3 sing N N 330 GLY C O doub N N 331 GLY C OXT sing N N 332 GLY OXT HXT sing N N 333 GOL C1 O1 sing N N 334 GOL C1 C2 sing N N 335 GOL C1 H11 sing N N 336 GOL C1 H12 sing N N 337 GOL O1 HO1 sing N N 338 GOL C2 O2 sing N N 339 GOL C2 C3 sing N N 340 GOL C2 H2 sing N N 341 GOL O2 HO2 sing N N 342 GOL C3 O3 sing N N 343 GOL C3 H31 sing N N 344 GOL C3 H32 sing N N 345 GOL O3 HO3 sing N N 346 HIS N CA sing N N 347 HIS N H sing N N 348 HIS N H2 sing N N 349 HIS CA C sing N N 350 HIS CA CB sing N N 351 HIS CA HA sing N N 352 HIS C O doub N N 353 HIS C OXT sing N N 354 HIS CB CG sing N N 355 HIS CB HB2 sing N N 356 HIS CB HB3 sing N N 357 HIS CG ND1 sing Y N 358 HIS CG CD2 doub Y N 359 HIS ND1 CE1 doub Y N 360 HIS ND1 HD1 sing N N 361 HIS CD2 NE2 sing Y N 362 HIS CD2 HD2 sing N N 363 HIS CE1 NE2 sing Y N 364 HIS CE1 HE1 sing N N 365 HIS NE2 HE2 sing N N 366 HIS OXT HXT sing N N 367 HOH O H1 sing N N 368 HOH O H2 sing N N 369 ILE N CA sing N N 370 ILE N H sing N N 371 ILE N H2 sing N N 372 ILE CA C sing N N 373 ILE CA CB sing N N 374 ILE CA HA sing N N 375 ILE C O doub N N 376 ILE C OXT sing N N 377 ILE CB CG1 sing N N 378 ILE CB CG2 sing N N 379 ILE CB HB sing N N 380 ILE CG1 CD1 sing N N 381 ILE CG1 HG12 sing N N 382 ILE CG1 HG13 sing N N 383 ILE CG2 HG21 sing N N 384 ILE CG2 HG22 sing N N 385 ILE CG2 HG23 sing N N 386 ILE CD1 HD11 sing N N 387 ILE CD1 HD12 sing N N 388 ILE CD1 HD13 sing N N 389 ILE OXT HXT sing N N 390 LEU N CA sing N N 391 LEU N H sing N N 392 LEU N H2 sing N N 393 LEU CA C sing N N 394 LEU CA CB sing N N 395 LEU CA HA sing N N 396 LEU C O doub N N 397 LEU C OXT sing N N 398 LEU CB CG sing N N 399 LEU CB HB2 sing N N 400 LEU CB HB3 sing N N 401 LEU CG CD1 sing N N 402 LEU CG CD2 sing N N 403 LEU CG HG sing N N 404 LEU CD1 HD11 sing N N 405 LEU CD1 HD12 sing N N 406 LEU CD1 HD13 sing N N 407 LEU CD2 HD21 sing N N 408 LEU CD2 HD22 sing N N 409 LEU CD2 HD23 sing N N 410 LEU OXT HXT sing N N 411 LYS N CA sing N N 412 LYS N H sing N N 413 LYS N H2 sing N N 414 LYS CA C sing N N 415 LYS CA CB sing N N 416 LYS CA HA sing N N 417 LYS C O doub N N 418 LYS C OXT sing N N 419 LYS CB CG sing N N 420 LYS CB HB2 sing N N 421 LYS CB HB3 sing N N 422 LYS CG CD sing N N 423 LYS CG HG2 sing N N 424 LYS CG HG3 sing N N 425 LYS CD CE sing N N 426 LYS CD HD2 sing N N 427 LYS CD HD3 sing N N 428 LYS CE NZ sing N N 429 LYS CE HE2 sing N N 430 LYS CE HE3 sing N N 431 LYS NZ HZ1 sing N N 432 LYS NZ HZ2 sing N N 433 LYS NZ HZ3 sing N N 434 LYS OXT HXT sing N N 435 MET N CA sing N N 436 MET N H sing N N 437 MET N H2 sing N N 438 MET CA C sing N N 439 MET CA CB sing N N 440 MET CA HA sing N N 441 MET C O doub N N 442 MET C OXT sing N N 443 MET CB CG sing N N 444 MET CB HB2 sing N N 445 MET CB HB3 sing N N 446 MET CG SD sing N N 447 MET CG HG2 sing N N 448 MET CG HG3 sing N N 449 MET SD CE sing N N 450 MET CE HE1 sing N N 451 MET CE HE2 sing N N 452 MET CE HE3 sing N N 453 MET OXT HXT sing N N 454 PHE N CA sing N N 455 PHE N H sing N N 456 PHE N H2 sing N N 457 PHE CA C sing N N 458 PHE CA CB sing N N 459 PHE CA HA sing N N 460 PHE C O doub N N 461 PHE C OXT sing N N 462 PHE CB CG sing N N 463 PHE CB HB2 sing N N 464 PHE CB HB3 sing N N 465 PHE CG CD1 doub Y N 466 PHE CG CD2 sing Y N 467 PHE CD1 CE1 sing Y N 468 PHE CD1 HD1 sing N N 469 PHE CD2 CE2 doub Y N 470 PHE CD2 HD2 sing N N 471 PHE CE1 CZ doub Y N 472 PHE CE1 HE1 sing N N 473 PHE CE2 CZ sing Y N 474 PHE CE2 HE2 sing N N 475 PHE CZ HZ sing N N 476 PHE OXT HXT sing N N 477 PRO N CA sing N N 478 PRO N CD sing N N 479 PRO N H sing N N 480 PRO CA C sing N N 481 PRO CA CB sing N N 482 PRO CA HA sing N N 483 PRO C O doub N N 484 PRO C OXT sing N N 485 PRO CB CG sing N N 486 PRO CB HB2 sing N N 487 PRO CB HB3 sing N N 488 PRO CG CD sing N N 489 PRO CG HG2 sing N N 490 PRO CG HG3 sing N N 491 PRO CD HD2 sing N N 492 PRO CD HD3 sing N N 493 PRO OXT HXT sing N N 494 SER N CA sing N N 495 SER N H sing N N 496 SER N H2 sing N N 497 SER CA C sing N N 498 SER CA CB sing N N 499 SER CA HA sing N N 500 SER C O doub N N 501 SER C OXT sing N N 502 SER CB OG sing N N 503 SER CB HB2 sing N N 504 SER CB HB3 sing N N 505 SER OG HG sing N N 506 SER OXT HXT sing N N 507 THR N CA sing N N 508 THR N H sing N N 509 THR N H2 sing N N 510 THR CA C sing N N 511 THR CA CB sing N N 512 THR CA HA sing N N 513 THR C O doub N N 514 THR C OXT sing N N 515 THR CB OG1 sing N N 516 THR CB CG2 sing N N 517 THR CB HB sing N N 518 THR OG1 HG1 sing N N 519 THR CG2 HG21 sing N N 520 THR CG2 HG22 sing N N 521 THR CG2 HG23 sing N N 522 THR OXT HXT sing N N 523 TYR N CA sing N N 524 TYR N H sing N N 525 TYR N H2 sing N N 526 TYR CA C sing N N 527 TYR CA CB sing N N 528 TYR CA HA sing N N 529 TYR C O doub N N 530 TYR C OXT sing N N 531 TYR CB CG sing N N 532 TYR CB HB2 sing N N 533 TYR CB HB3 sing N N 534 TYR CG CD1 doub Y N 535 TYR CG CD2 sing Y N 536 TYR CD1 CE1 sing Y N 537 TYR CD1 HD1 sing N N 538 TYR CD2 CE2 doub Y N 539 TYR CD2 HD2 sing N N 540 TYR CE1 CZ doub Y N 541 TYR CE1 HE1 sing N N 542 TYR CE2 CZ sing Y N 543 TYR CE2 HE2 sing N N 544 TYR CZ OH sing N N 545 TYR OH HH sing N N 546 TYR OXT HXT sing N N 547 VAL N CA sing N N 548 VAL N H sing N N 549 VAL N H2 sing N N 550 VAL CA C sing N N 551 VAL CA CB sing N N 552 VAL CA HA sing N N 553 VAL C O doub N N 554 VAL C OXT sing N N 555 VAL CB CG1 sing N N 556 VAL CB CG2 sing N N 557 VAL CB HB sing N N 558 VAL CG1 HG11 sing N N 559 VAL CG1 HG12 sing N N 560 VAL CG1 HG13 sing N N 561 VAL CG2 HG21 sing N N 562 VAL CG2 HG22 sing N N 563 VAL CG2 HG23 sing N N 564 VAL OXT HXT sing N N 565 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3M9M 'double helix' 3M9M 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 1 1_555 C DC 18 1_555 -0.213 -0.472 0.089 8.238 -2.096 -8.563 1 P_DG1:DC17_T P 1 ? T 17 ? 19 1 1 B DG 2 1_555 C DC 17 1_555 -0.081 -0.719 -0.247 6.862 -1.539 -1.927 2 P_DG2:DC16_T P 2 ? T 16 ? 19 1 1 B DG 3 1_555 C DC 16 1_555 -0.095 -0.289 0.109 5.401 2.118 -6.630 3 P_DG3:DC15_T P 3 ? T 15 ? 19 1 1 B DG 4 1_555 C DC 15 1_555 -0.025 0.199 0.179 9.203 -1.861 4.130 4 P_DG4:DC14_T P 4 ? T 14 ? 19 1 1 B DG 5 1_555 C DC 14 1_555 0.515 -0.451 -0.137 -2.562 -3.930 3.314 5 P_DG5:DC13_T P 5 ? T 13 ? 19 1 1 B DA 6 1_555 C DT 13 1_555 0.378 -0.192 -0.037 -2.255 4.770 4.622 6 P_DA6:DT12_T P 6 ? T 12 ? 20 1 1 B DA 7 1_555 C DT 12 1_555 0.450 0.186 -0.569 -6.373 4.671 4.747 7 P_DA7:DT11_T P 7 ? T 11 ? 20 1 1 B DG 8 1_555 C DC 11 1_555 -0.736 -0.611 0.009 13.127 -0.609 4.871 8 P_DG8:DC10_T P 8 ? T 10 ? 19 1 1 B DG 9 1_555 C DC 10 1_555 0.392 -0.399 -0.317 -7.983 1.121 2.747 9 P_DG9:DC9_T P 9 ? T 9 ? 19 1 1 B DA 10 1_555 C DT 9 1_555 0.149 -0.180 0.095 4.216 -2.952 14.017 10 P_DA10:DT8_T P 10 ? T 8 ? 20 1 1 B DA 11 1_555 C DT 8 1_555 0.613 0.283 0.091 14.384 -7.636 2.023 11 P_DA11:DT7_T P 11 ? T 7 ? 20 1 1 B DA 12 1_555 C DT 7 1_555 -0.547 -0.378 0.026 14.359 1.783 6.226 12 P_DA12:DT6_T P 12 ? T 6 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 1 1_555 C DC 18 1_555 B DG 2 1_555 C DC 17 1_555 0.742 -0.727 3.433 4.948 -1.316 30.752 -1.085 -0.370 3.534 -2.459 -9.250 31.165 1 PP_DG1DG2:DC16DC17_TT P 1 ? T 17 ? P 2 ? T 16 ? 1 B DG 2 1_555 C DC 17 1_555 B DG 3 1_555 C DC 16 1_555 -1.346 0.005 3.562 -6.754 0.681 31.581 -0.129 1.064 3.761 1.233 12.234 32.284 2 PP_DG2DG3:DC15DC16_TT P 2 ? T 16 ? P 3 ? T 15 ? 1 B DG 3 1_555 C DC 16 1_555 B DG 4 1_555 C DC 15 1_555 1.098 -0.379 3.257 2.279 3.577 32.848 -1.269 -1.542 3.266 6.293 -4.008 33.113 3 PP_DG3DG4:DC14DC15_TT P 3 ? T 15 ? P 4 ? T 14 ? 1 B DG 4 1_555 C DC 15 1_555 B DG 5 1_555 C DC 14 1_555 0.241 -1.555 3.487 2.859 13.574 34.870 -4.180 -0.004 2.727 21.622 -4.554 37.448 4 PP_DG4DG5:DC13DC14_TT P 4 ? T 14 ? P 5 ? T 13 ? 1 B DG 5 1_555 C DC 14 1_555 B DA 6 1_555 C DT 13 1_555 -1.094 1.009 3.331 -2.462 6.878 45.523 0.670 1.176 3.491 8.821 3.157 46.074 5 PP_DG5DA6:DT12DC13_TT P 5 ? T 13 ? P 6 ? T 12 ? 1 B DA 6 1_555 C DT 13 1_555 B DA 7 1_555 C DT 12 1_555 -0.625 -0.268 3.368 0.528 8.720 35.151 -1.682 1.083 3.203 14.169 -0.858 36.187 6 PP_DA6DA7:DT11DT12_TT P 6 ? T 12 ? P 7 ? T 11 ? 1 B DA 7 1_555 C DT 12 1_555 B DG 8 1_555 C DC 11 1_555 -0.136 0.498 3.276 -0.121 -3.956 35.633 1.373 0.204 3.205 -6.439 0.196 35.845 7 PP_DA7DG8:DC10DT11_TT P 7 ? T 11 ? P 8 ? T 10 ? 1 B DG 8 1_555 C DC 11 1_555 B DG 9 1_555 C DC 10 1_555 -0.244 -0.872 3.998 -1.846 0.079 38.133 -1.346 0.088 4.004 0.121 2.824 38.176 8 PP_DG8DG9:DC9DC10_TT P 8 ? T 10 ? P 9 ? T 9 ? 1 B DG 9 1_555 C DC 10 1_555 B DA 10 1_555 C DT 9 1_555 0.089 0.536 2.976 -0.814 8.549 31.723 -0.418 -0.288 3.011 15.292 1.455 32.836 9 PP_DG9DA10:DT8DC9_TT P 9 ? T 9 ? P 10 ? T 8 ? 1 B DA 10 1_555 C DT 9 1_555 B DA 11 1_555 C DT 8 1_555 -0.525 -0.529 3.357 4.238 -4.966 35.267 -0.127 1.478 3.316 -8.110 -6.922 35.847 10 PP_DA10DA11:DT7DT8_TT P 10 ? T 8 ? P 11 ? T 7 ? 1 B DA 11 1_555 C DT 8 1_555 B DA 12 1_555 C DT 7 1_555 0.482 -0.700 3.405 -0.476 3.463 23.538 -2.864 -1.330 3.259 8.429 1.159 23.792 11 PP_DA11DA12:DT6DT7_TT P 11 ? T 7 ? P 12 ? T 6 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1JX4 _pdbx_initial_refinement_model.details 'PDB ENTRY 1JX4' # _atom_sites.entry_id 3M9M _atom_sites.fract_transf_matrix[1][1] 0.010144 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009882 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019077 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O P PT S # loop_