data_3M9P # _entry.id 3M9P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3M9P NDB NA0488 RCSB RCSB058284 WWPDB D_1000058284 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2010-08-18 _pdbx_database_PDB_obs_spr.pdb_id 3OA6 _pdbx_database_PDB_obs_spr.replace_pdb_id 3M9P _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3M9Q _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3M9P _pdbx_database_status.status_code OBS _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-03-22 _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kim, D.' 1 'Huang, P.' 2 'Rastinejad, F.' 3 'Khorasanizadeh, S.' 4 # _citation.id primary _citation.title 'Corecognition of DNA and a methylated histone tail by the MSL3 chromodomain.' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year 2010 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9985 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20657587 _citation.pdbx_database_id_DOI 10.1038/nsmb.1856 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kim, D.' 1 primary 'Blus, B.J.' 2 primary 'Chandra, V.' 3 primary 'Huang, P.' 4 primary 'Rastinejad, F.' 5 primary 'Khorasanizadeh, S.' 6 # _cell.entry_id 3M9P _cell.length_a 37.976 _cell.length_b 44.094 _cell.length_c 67.500 _cell.angle_alpha 81.35 _cell.angle_beta 89.84 _cell.angle_gamma 90.04 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3M9P _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Male-specific lethal 3 homolog' 13101.143 2 ? ? Chromodomain ? 2 polymer syn ;DNA (5'-D(*GP*CP*TP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*A)-3') ; 4947.229 2 ? ? ? ? 3 polymer syn ;DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*AP*G)-3') ; 4849.153 2 ? ? ? ? 4 polymer syn 'H4 peptide monomethylated at lysine 20' 2687.177 1 ? ? 'Histone H4' ? 5 non-polymer syn IMIDAZOLE 69.085 1 ? ? ? ? 6 water nat water 18.015 108 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Male-specific lethal-3 protein-like 1, MSL3-like 1, Male-specific lethal-3 homolog 1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MKKHHHHHHMSASEGMKFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDH VLRDTDENRRLQRKLARKAVARLRSTGRKK ; ;MKKHHHHHHMSASEGMKFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDH VLRDTDENRRLQRKLARKAVARLRSTGRKK ; A,B ? 2 polydeoxyribonucleotide no no '(DG)(DC)(DT)(DA)(DG)(DG)(DT)(DC)(DA)(DA)(DA)(DG)(DG)(DT)(DC)(DA)' GCTAGGTCAAAGGTCA C,E ? 3 polydeoxyribonucleotide no no '(DC)(DT)(DG)(DA)(DC)(DC)(DT)(DT)(DT)(DG)(DA)(DC)(DC)(DT)(DA)(DG)' CTGACCTTTGACCTAG D,F ? 4 'polypeptide(L)' no yes 'GLGKGGAKRHR(MLZ)VLRDNIQGITKY' GLGKGGAKRHRKVLRDNIQGITKY G ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 LYS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 MET n 1 11 SER n 1 12 ALA n 1 13 SER n 1 14 GLU n 1 15 GLY n 1 16 MET n 1 17 LYS n 1 18 PHE n 1 19 LYS n 1 20 PHE n 1 21 HIS n 1 22 SER n 1 23 GLY n 1 24 GLU n 1 25 LYS n 1 26 VAL n 1 27 LEU n 1 28 CYS n 1 29 PHE n 1 30 GLU n 1 31 PRO n 1 32 ASP n 1 33 PRO n 1 34 THR n 1 35 LYS n 1 36 ALA n 1 37 ARG n 1 38 VAL n 1 39 LEU n 1 40 TYR n 1 41 ASP n 1 42 ALA n 1 43 LYS n 1 44 ILE n 1 45 VAL n 1 46 ASP n 1 47 VAL n 1 48 ILE n 1 49 VAL n 1 50 GLY n 1 51 LYS n 1 52 ASP n 1 53 GLU n 1 54 LYS n 1 55 GLY n 1 56 ARG n 1 57 LYS n 1 58 ILE n 1 59 PRO n 1 60 GLU n 1 61 TYR n 1 62 LEU n 1 63 ILE n 1 64 HIS n 1 65 PHE n 1 66 ASN n 1 67 GLY n 1 68 TRP n 1 69 ASN n 1 70 ARG n 1 71 SER n 1 72 TRP n 1 73 ASP n 1 74 ARG n 1 75 TRP n 1 76 ALA n 1 77 ALA n 1 78 GLU n 1 79 ASP n 1 80 HIS n 1 81 VAL n 1 82 LEU n 1 83 ARG n 1 84 ASP n 1 85 THR n 1 86 ASP n 1 87 GLU n 1 88 ASN n 1 89 ARG n 1 90 ARG n 1 91 LEU n 1 92 GLN n 1 93 ARG n 1 94 LYS n 1 95 LEU n 1 96 ALA n 1 97 ARG n 1 98 LYS n 1 99 ALA n 1 100 VAL n 1 101 ALA n 1 102 ARG n 1 103 LEU n 1 104 ARG n 1 105 SER n 1 106 THR n 1 107 GLY n 1 108 ARG n 1 109 LYS n 1 110 LYS n 2 1 DG n 2 2 DC n 2 3 DT n 2 4 DA n 2 5 DG n 2 6 DG n 2 7 DT n 2 8 DC n 2 9 DA n 2 10 DA n 2 11 DA n 2 12 DG n 2 13 DG n 2 14 DT n 2 15 DC n 2 16 DA n 3 1 DC n 3 2 DT n 3 3 DG n 3 4 DA n 3 5 DC n 3 6 DC n 3 7 DT n 3 8 DT n 3 9 DT n 3 10 DG n 3 11 DA n 3 12 DC n 3 13 DC n 3 14 DT n 3 15 DA n 3 16 DG n 4 1 GLY n 4 2 LEU n 4 3 GLY n 4 4 LYS n 4 5 GLY n 4 6 GLY n 4 7 ALA n 4 8 LYS n 4 9 ARG n 4 10 HIS n 4 11 ARG n 4 12 MLZ n 4 13 VAL n 4 14 LEU n 4 15 ARG n 4 16 ASP n 4 17 ASN n 4 18 ILE n 4 19 GLN n 4 20 GLY n 4 21 ILE n 4 22 THR n 4 23 LYS n 4 24 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'MSL3, MSL3L1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP MS3L1_HUMAN Q8N5Y2 1 ;MSASEGMKFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDENR RLQRKLARKAVARLRSTGRKK ; 1 ? 2 PDB 3M9P 3M9P 2 ? ? ? 3 PDB 3M9P 3M9P 3 ? ? ? 4 PDB 3M9P 3M9P 4 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3M9P A 10 ? 110 ? Q8N5Y2 1 ? 101 ? 1 101 2 1 3M9P B 10 ? 110 ? Q8N5Y2 1 ? 101 ? 1 101 3 2 3M9P C 1 ? 16 ? 3M9P 1 ? 16 ? 1 16 4 2 3M9P E 1 ? 16 ? 3M9P 1 ? 16 ? 1 16 5 3 3M9P D 1 ? 16 ? 3M9P 1 ? 16 ? 1 16 6 3 3M9P F 1 ? 16 ? 3M9P 1 ? 16 ? 1 16 7 4 3M9P G 1 ? 24 ? 3M9P 9 ? 32 ? 9 32 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3M9P MET A 1 ? UNP Q8N5Y2 ? ? 'EXPRESSION TAG' -8 1 1 3M9P LYS A 2 ? UNP Q8N5Y2 ? ? 'EXPRESSION TAG' -7 2 1 3M9P LYS A 3 ? UNP Q8N5Y2 ? ? 'EXPRESSION TAG' -6 3 1 3M9P HIS A 4 ? UNP Q8N5Y2 ? ? 'EXPRESSION TAG' -5 4 1 3M9P HIS A 5 ? UNP Q8N5Y2 ? ? 'EXPRESSION TAG' -4 5 1 3M9P HIS A 6 ? UNP Q8N5Y2 ? ? 'EXPRESSION TAG' -3 6 1 3M9P HIS A 7 ? UNP Q8N5Y2 ? ? 'EXPRESSION TAG' -2 7 1 3M9P HIS A 8 ? UNP Q8N5Y2 ? ? 'EXPRESSION TAG' -1 8 1 3M9P HIS A 9 ? UNP Q8N5Y2 ? ? 'EXPRESSION TAG' 0 9 2 3M9P MET B 1 ? UNP Q8N5Y2 ? ? 'EXPRESSION TAG' -8 10 2 3M9P LYS B 2 ? UNP Q8N5Y2 ? ? 'EXPRESSION TAG' -7 11 2 3M9P LYS B 3 ? UNP Q8N5Y2 ? ? 'EXPRESSION TAG' -6 12 2 3M9P HIS B 4 ? UNP Q8N5Y2 ? ? 'EXPRESSION TAG' -5 13 2 3M9P HIS B 5 ? UNP Q8N5Y2 ? ? 'EXPRESSION TAG' -4 14 2 3M9P HIS B 6 ? UNP Q8N5Y2 ? ? 'EXPRESSION TAG' -3 15 2 3M9P HIS B 7 ? UNP Q8N5Y2 ? ? 'EXPRESSION TAG' -2 16 2 3M9P HIS B 8 ? UNP Q8N5Y2 ? ? 'EXPRESSION TAG' -1 17 2 3M9P HIS B 9 ? UNP Q8N5Y2 ? ? 'EXPRESSION TAG' 0 18 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IMD non-polymer . IMIDAZOLE ? 'C3 H5 N2 1' 69.085 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MLZ 'L-peptide linking' n N-METHYL-LYSINE ? 'C7 H16 N2 O2' 160.214 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3M9P _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.30 _exptl_crystal.density_percent_sol 46.63 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;0.04M Barium acetate, 0.05M sodium cacodylate, 18% 2-methyl-2,4-pentanediol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'Barium acetate' ? ? ? 1 2 1 'sodium cacodylate' ? ? ? 1 3 1 2-methyl-2,4-pentanediol ? ? ? 1 4 2 'Barium acetate' ? ? ? 1 5 2 'sodium cacodylate' ? ? ? 1 6 2 2-methyl-2,4-pentanediol ? ? ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.99999 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.99999 # _reflns.entry_id 3M9P _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 40.00 _reflns.d_resolution_high 2.35 _reflns.number_obs 16389 _reflns.number_all ? _reflns.percent_possible_obs 97.2 _reflns.pdbx_Rmerge_I_obs 0.049 _reflns.pdbx_Rsym_value 0.049 _reflns.pdbx_netI_over_sigmaI 10.792 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.0 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.35 _reflns_shell.d_res_low 2.44 _reflns_shell.percent_possible_all 97.6 _reflns_shell.Rmerge_I_obs 0.420 _reflns_shell.pdbx_Rsym_value 0.420 _reflns_shell.meanI_over_sigI_obs 2.017 _reflns_shell.pdbx_redundancy 2.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3M9P _refine.ls_number_reflns_obs 16389 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 9.93 _refine.ls_d_res_high 2.35 _refine.ls_percent_reflns_obs 97.19 _refine.ls_R_factor_obs 0.22843 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22580 _refine.ls_R_factor_R_free 0.27807 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 880 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 1.00 _refine.occupancy_max 1.00 _refine.correlation_coeff_Fo_to_Fc 0.945 _refine.correlation_coeff_Fo_to_Fc_free 0.922 _refine.B_iso_mean 77.788 _refine.aniso_B[1][1] -0.32 _refine.aniso_B[2][2] 0.20 _refine.aniso_B[3][3] 0.11 _refine.aniso_B[1][2] -0.21 _refine.aniso_B[1][3] -0.19 _refine.aniso_B[2][3] 0.03 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.412 _refine.pdbx_overall_ESU_R_Free 0.280 _refine.overall_SU_ML 0.242 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 20.881 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1435 _refine_hist.pdbx_number_atoms_nucleic_acid 1300 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 108 _refine_hist.number_atoms_total 2848 _refine_hist.d_res_high 2.35 _refine_hist.d_res_low 9.93 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.021 ? 2928 'X-RAY DIFFRACTION' ? r_bond_other_d 0.004 0.020 ? 1660 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.947 2.503 ? 4215 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.643 3.000 ? 4057 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.319 5.000 ? 170 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 31.699 22.179 ? 78 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 22.504 15.000 ? 266 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 23.989 15.000 ? 19 'X-RAY DIFFRACTION' ? r_chiral_restr 0.104 0.200 ? 453 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 2291 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.003 0.020 ? 464 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.297 0.200 ? 138 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other 0.142 0.200 ? 3 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.262 0.200 ? 13 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.327 0.200 ? 60 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.442 0.200 ? 8 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.484 2.000 ? 858 'X-RAY DIFFRACTION' ? r_mcbond_other 0.243 2.000 ? 345 'X-RAY DIFFRACTION' ? r_mcangle_it 2.577 3.000 ? 1373 'X-RAY DIFFRACTION' ? r_scbond_it 1.279 2.000 ? 2070 'X-RAY DIFFRACTION' ? r_scangle_it 2.085 3.000 ? 2842 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight 1 A 485 0.03 0.05 'tight positional' 1 1 'X-RAY DIFFRACTION' ? ? ? ? ? ? 1 B 721 0.07 0.50 'medium positional' 1 2 'X-RAY DIFFRACTION' ? ? ? ? ? ? 1 A 485 0.13 0.50 'tight thermal' 1 3 'X-RAY DIFFRACTION' ? ? ? ? ? ? 1 B 721 0.09 2.00 'medium thermal' 1 4 'X-RAY DIFFRACTION' ? ? ? ? ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.350 _refine_ls_shell.d_res_low 2.408 _refine_ls_shell.number_reflns_R_work 1091 _refine_ls_shell.R_factor_R_work 0.313 _refine_ls_shell.percent_reflns_obs 92.31 _refine_ls_shell.R_factor_R_free 0.354 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 61 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # loop_ _struct_ncs_dom.id _struct_ncs_dom.details _struct_ncs_dom.pdbx_ens_id 1 A 1 2 B 1 # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 A 10 A 91 1 2 ? ? ? ? ? ? ? ? 1 ? 2 B 10 B 91 1 2 ? ? ? ? ? ? ? ? 1 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3M9P _struct.title 'Human MSL3 Chromodomain bound to DNA and H4K20me1 peptide' _struct.pdbx_descriptor 'Male-specific lethal 3 homolog, H4 peptide monomethylated at lysine 20' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3M9P _struct_keywords.text ;Chromodomain, MSL3, histone H4 tail, DNA backbone recognition, methyllysine recognition, H4K20me1, aromatic cage, MSL complex, transcription upregulation, DNA BINDING PROTEIN-DNA complex ; _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 5 ? I N N 6 ? J N N 6 ? K N N 6 ? L N N 6 ? M N N 6 ? N N N 6 ? O N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 69 ? ASP A 73 ? ASN A 60 ASP A 64 5 ? 5 HELX_P HELX_P2 2 THR A 85 ? ALA A 101 ? THR A 76 ALA A 92 1 ? 17 HELX_P HELX_P3 3 ASN B 69 ? ASP B 73 ? ASN B 60 ASP B 64 5 ? 5 HELX_P HELX_P4 4 THR B 85 ? ALA B 101 ? THR B 76 ALA B 92 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? G ARG 11 C ? ? ? 1_555 G MLZ 12 N ? ? G ARG 19 G MLZ 20 1_555 ? ? ? ? ? ? ? 1.325 ? covale2 covale ? ? G MLZ 12 C ? ? ? 1_555 G VAL 13 N ? ? G MLZ 20 G VAL 21 1_555 ? ? ? ? ? ? ? 1.319 ? hydrog1 hydrog ? ? C DC 2 N3 ? ? ? 1_555 D DG 16 N1 ? ? C DC 2 D DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DG 16 O6 ? ? C DC 2 D DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DG 16 N2 ? ? C DC 2 D DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? C DT 3 N3 ? ? ? 1_555 D DA 15 N1 ? ? C DT 3 D DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? C DT 3 O4 ? ? ? 1_555 D DA 15 N6 ? ? C DT 3 D DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? C DA 4 N1 ? ? ? 1_555 D DT 14 N3 ? ? C DA 4 D DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? C DA 4 N6 ? ? ? 1_555 D DT 14 O4 ? ? C DA 4 D DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? C DG 5 N1 ? ? ? 1_555 D DC 13 N3 ? ? C DG 5 D DC 13 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? hydrog9 hydrog ? ? C DG 6 N1 ? ? ? 1_555 D DC 12 N3 ? ? C DG 6 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? C DG 6 N2 ? ? ? 1_555 D DC 12 O2 ? ? C DG 6 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? C DG 6 O6 ? ? ? 1_555 D DC 12 N4 ? ? C DG 6 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? C DT 7 N3 ? ? ? 1_555 D DA 11 N1 ? ? C DT 7 D DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? C DT 7 O4 ? ? ? 1_555 D DA 11 N6 ? ? C DT 7 D DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? C DC 8 N3 ? ? ? 1_555 D DG 10 N1 ? ? C DC 8 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? C DC 8 N4 ? ? ? 1_555 D DG 10 O6 ? ? C DC 8 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? C DC 8 O2 ? ? ? 1_555 D DG 10 N2 ? ? C DC 8 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? C DA 9 N1 ? ? ? 1_555 D DT 9 N3 ? ? C DA 9 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? C DA 9 N6 ? ? ? 1_555 D DT 9 O4 ? ? C DA 9 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? C DA 10 N1 ? ? ? 1_555 D DT 8 N3 ? ? C DA 10 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? C DA 10 N6 ? ? ? 1_555 D DT 8 O4 ? ? C DA 10 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? C DA 11 N1 ? ? ? 1_555 D DT 7 N3 ? ? C DA 11 D DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? C DA 11 N6 ? ? ? 1_555 D DT 7 O4 ? ? C DA 11 D DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? C DG 12 N1 ? ? ? 1_555 D DC 6 N3 ? ? C DG 12 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? C DG 12 N2 ? ? ? 1_555 D DC 6 O2 ? ? C DG 12 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? C DG 12 O6 ? ? ? 1_555 D DC 6 N4 ? ? C DG 12 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? C DG 13 N1 ? ? ? 1_555 D DC 5 N3 ? ? C DG 13 D DC 5 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? hydrog27 hydrog ? ? C DT 14 N3 ? ? ? 1_555 D DA 4 N1 ? ? C DT 14 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? C DT 14 O4 ? ? ? 1_555 D DA 4 N6 ? ? C DT 14 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? C DC 15 N3 ? ? ? 1_555 D DG 3 N1 ? ? C DC 15 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? C DC 15 N4 ? ? ? 1_555 D DG 3 O6 ? ? C DC 15 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? C DC 15 O2 ? ? ? 1_555 D DG 3 N2 ? ? C DC 15 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? C DA 16 N1 ? ? ? 1_555 D DT 2 N3 ? ? C DA 16 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? C DA 16 N6 ? ? ? 1_555 D DT 2 O4 ? ? C DA 16 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? E DC 2 N3 ? ? ? 1_555 F DG 16 N1 ? ? E DC 2 F DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? E DC 2 N4 ? ? ? 1_555 F DG 16 O6 ? ? E DC 2 F DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? E DC 2 O2 ? ? ? 1_555 F DG 16 N2 ? ? E DC 2 F DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? E DT 3 N3 ? ? ? 1_555 F DA 15 N1 ? ? E DT 3 F DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? E DT 3 O4 ? ? ? 1_555 F DA 15 N6 ? ? E DT 3 F DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? E DA 4 N1 ? ? ? 1_555 F DT 14 N3 ? ? E DA 4 F DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? E DA 4 N6 ? ? ? 1_555 F DT 14 O4 ? ? E DA 4 F DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog41 hydrog ? ? E DG 5 N1 ? ? ? 1_555 F DC 13 N3 ? ? E DG 5 F DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog42 hydrog ? ? E DG 5 N2 ? ? ? 1_555 F DC 13 O2 ? ? E DG 5 F DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog43 hydrog ? ? E DG 5 O6 ? ? ? 1_555 F DC 13 N4 ? ? E DG 5 F DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog44 hydrog ? ? E DG 6 N1 ? ? ? 1_555 F DC 12 N3 ? ? E DG 6 F DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog45 hydrog ? ? E DG 6 N2 ? ? ? 1_555 F DC 12 O2 ? ? E DG 6 F DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog46 hydrog ? ? E DG 6 O6 ? ? ? 1_555 F DC 12 N4 ? ? E DG 6 F DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog47 hydrog ? ? E DT 7 N3 ? ? ? 1_555 F DA 11 N1 ? ? E DT 7 F DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog48 hydrog ? ? E DT 7 O4 ? ? ? 1_555 F DA 11 N6 ? ? E DT 7 F DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog49 hydrog ? ? E DC 8 N3 ? ? ? 1_555 F DG 10 N1 ? ? E DC 8 F DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog50 hydrog ? ? E DC 8 N4 ? ? ? 1_555 F DG 10 O6 ? ? E DC 8 F DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog51 hydrog ? ? E DC 8 O2 ? ? ? 1_555 F DG 10 N2 ? ? E DC 8 F DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog52 hydrog ? ? E DA 9 N1 ? ? ? 1_555 F DT 9 N3 ? ? E DA 9 F DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog53 hydrog ? ? E DA 9 N6 ? ? ? 1_555 F DT 9 O4 ? ? E DA 9 F DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog54 hydrog ? ? E DA 10 N1 ? ? ? 1_555 F DT 8 N3 ? ? E DA 10 F DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog55 hydrog ? ? E DA 10 N6 ? ? ? 1_555 F DT 8 O4 ? ? E DA 10 F DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog56 hydrog ? ? E DA 11 N1 ? ? ? 1_555 F DT 7 N3 ? ? E DA 11 F DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog57 hydrog ? ? E DA 11 N6 ? ? ? 1_555 F DT 7 O4 ? ? E DA 11 F DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog58 hydrog ? ? E DG 12 N1 ? ? ? 1_555 F DC 6 N3 ? ? E DG 12 F DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog59 hydrog ? ? E DG 12 N2 ? ? ? 1_555 F DC 6 O2 ? ? E DG 12 F DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog60 hydrog ? ? E DG 12 O6 ? ? ? 1_555 F DC 6 N4 ? ? E DG 12 F DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog61 hydrog ? ? E DG 13 N1 ? ? ? 1_555 F DC 5 N3 ? ? E DG 13 F DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog62 hydrog ? ? E DG 13 N2 ? ? ? 1_555 F DC 5 O2 ? ? E DG 13 F DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog63 hydrog ? ? E DG 13 O6 ? ? ? 1_555 F DC 5 N4 ? ? E DG 13 F DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog64 hydrog ? ? E DT 14 N3 ? ? ? 1_555 F DA 4 N1 ? ? E DT 14 F DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog65 hydrog ? ? E DT 14 O4 ? ? ? 1_555 F DA 4 N6 ? ? E DT 14 F DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog66 hydrog ? ? E DC 15 N3 ? ? ? 1_555 F DG 3 N1 ? ? E DC 15 F DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog67 hydrog ? ? E DC 15 N4 ? ? ? 1_555 F DG 3 O6 ? ? E DC 15 F DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog68 hydrog ? ? E DC 15 O2 ? ? ? 1_555 F DG 3 N2 ? ? E DC 15 F DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog69 hydrog ? ? E DA 16 N1 ? ? ? 1_555 F DT 2 N3 ? ? E DA 16 F DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog70 hydrog ? ? E DA 16 N6 ? ? ? 1_555 F DT 2 O4 ? ? E DA 16 F DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ARG _struct_mon_prot_cis.label_seq_id 11 _struct_mon_prot_cis.label_asym_id G _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ARG _struct_mon_prot_cis.auth_seq_id 19 _struct_mon_prot_cis.auth_asym_id G _struct_mon_prot_cis.pdbx_label_comp_id_2 MLZ _struct_mon_prot_cis.pdbx_label_seq_id_2 12 _struct_mon_prot_cis.pdbx_label_asym_id_2 G _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 MLZ _struct_mon_prot_cis.pdbx_auth_seq_id_2 20 _struct_mon_prot_cis.pdbx_auth_asym_id_2 G _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -6.73 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 74 ? ALA A 77 ? ARG A 65 ALA A 68 A 2 LYS A 57 ? PHE A 65 ? LYS A 48 PHE A 56 A 3 LEU A 39 ? LYS A 51 ? LEU A 30 LYS A 42 A 4 LYS A 25 ? PHE A 29 ? LYS A 16 PHE A 20 A 5 VAL A 81 ? ARG A 83 ? VAL A 72 ARG A 74 B 1 ARG B 74 ? ALA B 77 ? ARG B 65 ALA B 68 B 2 LYS B 57 ? PHE B 65 ? LYS B 48 PHE B 56 B 3 LEU B 39 ? LYS B 51 ? LEU B 30 LYS B 42 B 4 LYS B 25 ? PHE B 29 ? LYS B 16 PHE B 20 B 5 VAL B 81 ? ARG B 83 ? VAL B 72 ARG B 74 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ARG A 74 ? O ARG A 65 N ILE A 63 ? N ILE A 54 A 2 3 O LEU A 62 ? O LEU A 53 N ASP A 46 ? N ASP A 37 A 3 4 O ALA A 42 ? O ALA A 33 N VAL A 26 ? N VAL A 17 A 4 5 N LEU A 27 ? N LEU A 18 O LEU A 82 ? O LEU A 73 B 1 2 O ARG B 74 ? O ARG B 65 N ILE B 63 ? N ILE B 54 B 2 3 O LEU B 62 ? O LEU B 53 N ASP B 46 ? N ASP B 37 B 3 4 O ALA B 42 ? O ALA B 33 N VAL B 26 ? N VAL B 17 B 4 5 N LEU B 27 ? N LEU B 18 O LEU B 82 ? O LEU B 73 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'BINDING SITE FOR RESIDUE IMD B 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 TRP B 72 ? TRP B 63 . ? 1_555 ? 2 AC1 2 HOH J . ? HOH B 115 . ? 1_555 ? # _atom_sites.entry_id 3M9P _atom_sites.fract_transf_matrix[1][1] 0.026332 _atom_sites.fract_transf_matrix[1][2] 0.000018 _atom_sites.fract_transf_matrix[1][3] -0.000077 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022679 _atom_sites.fract_transf_matrix[2][3] -0.003450 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014985 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -8 ? ? ? A . n A 1 2 LYS 2 -7 ? ? ? A . n A 1 3 LYS 3 -6 ? ? ? A . n A 1 4 HIS 4 -5 ? ? ? A . n A 1 5 HIS 5 -4 ? ? ? A . n A 1 6 HIS 6 -3 ? ? ? A . n A 1 7 HIS 7 -2 ? ? ? A . n A 1 8 HIS 8 -1 ? ? ? A . n A 1 9 HIS 9 0 ? ? ? A . n A 1 10 MET 10 1 ? ? ? A . n A 1 11 SER 11 2 ? ? ? A . n A 1 12 ALA 12 3 ? ? ? A . n A 1 13 SER 13 4 ? ? ? A . n A 1 14 GLU 14 5 ? ? ? A . n A 1 15 GLY 15 6 ? ? ? A . n A 1 16 MET 16 7 ? ? ? A . n A 1 17 LYS 17 8 ? ? ? A . n A 1 18 PHE 18 9 9 PHE PHE A . n A 1 19 LYS 19 10 10 LYS LYS A . n A 1 20 PHE 20 11 11 PHE PHE A . n A 1 21 HIS 21 12 12 HIS HIS A . n A 1 22 SER 22 13 13 SER SER A . n A 1 23 GLY 23 14 14 GLY GLY A . n A 1 24 GLU 24 15 15 GLU GLU A . n A 1 25 LYS 25 16 16 LYS LYS A . n A 1 26 VAL 26 17 17 VAL VAL A . n A 1 27 LEU 27 18 18 LEU LEU A . n A 1 28 CYS 28 19 19 CYS CYS A . n A 1 29 PHE 29 20 20 PHE PHE A . n A 1 30 GLU 30 21 21 GLU GLU A . n A 1 31 PRO 31 22 22 PRO PRO A . n A 1 32 ASP 32 23 23 ASP ASP A . n A 1 33 PRO 33 24 24 PRO PRO A . n A 1 34 THR 34 25 25 THR THR A . n A 1 35 LYS 35 26 26 LYS LYS A . n A 1 36 ALA 36 27 27 ALA ALA A . n A 1 37 ARG 37 28 28 ARG ARG A . n A 1 38 VAL 38 29 29 VAL VAL A . n A 1 39 LEU 39 30 30 LEU LEU A . n A 1 40 TYR 40 31 31 TYR TYR A . n A 1 41 ASP 41 32 32 ASP ASP A . n A 1 42 ALA 42 33 33 ALA ALA A . n A 1 43 LYS 43 34 34 LYS LYS A . n A 1 44 ILE 44 35 35 ILE ILE A . n A 1 45 VAL 45 36 36 VAL VAL A . n A 1 46 ASP 46 37 37 ASP ASP A . n A 1 47 VAL 47 38 38 VAL VAL A . n A 1 48 ILE 48 39 39 ILE ILE A . n A 1 49 VAL 49 40 40 VAL VAL A . n A 1 50 GLY 50 41 41 GLY GLY A . n A 1 51 LYS 51 42 42 LYS LYS A . n A 1 52 ASP 52 43 43 ASP ASP A . n A 1 53 GLU 53 44 44 GLU GLU A . n A 1 54 LYS 54 45 45 LYS LYS A . n A 1 55 GLY 55 46 46 GLY GLY A . n A 1 56 ARG 56 47 47 ARG ARG A . n A 1 57 LYS 57 48 48 LYS LYS A . n A 1 58 ILE 58 49 49 ILE ILE A . n A 1 59 PRO 59 50 50 PRO PRO A . n A 1 60 GLU 60 51 51 GLU GLU A . n A 1 61 TYR 61 52 52 TYR TYR A . n A 1 62 LEU 62 53 53 LEU LEU A . n A 1 63 ILE 63 54 54 ILE ILE A . n A 1 64 HIS 64 55 55 HIS HIS A . n A 1 65 PHE 65 56 56 PHE PHE A . n A 1 66 ASN 66 57 57 ASN ASN A . n A 1 67 GLY 67 58 58 GLY GLY A . n A 1 68 TRP 68 59 59 TRP TRP A . n A 1 69 ASN 69 60 60 ASN ASN A . n A 1 70 ARG 70 61 61 ARG ARG A . n A 1 71 SER 71 62 62 SER SER A . n A 1 72 TRP 72 63 63 TRP TRP A . n A 1 73 ASP 73 64 64 ASP ASP A . n A 1 74 ARG 74 65 65 ARG ARG A . n A 1 75 TRP 75 66 66 TRP TRP A . n A 1 76 ALA 76 67 67 ALA ALA A . n A 1 77 ALA 77 68 68 ALA ALA A . n A 1 78 GLU 78 69 69 GLU GLU A . n A 1 79 ASP 79 70 70 ASP ASP A . n A 1 80 HIS 80 71 71 HIS HIS A . n A 1 81 VAL 81 72 72 VAL VAL A . n A 1 82 LEU 82 73 73 LEU LEU A . n A 1 83 ARG 83 74 74 ARG ARG A . n A 1 84 ASP 84 75 75 ASP ASP A . n A 1 85 THR 85 76 76 THR THR A . n A 1 86 ASP 86 77 77 ASP ASP A . n A 1 87 GLU 87 78 78 GLU GLU A . n A 1 88 ASN 88 79 79 ASN ASN A . n A 1 89 ARG 89 80 80 ARG ARG A . n A 1 90 ARG 90 81 81 ARG ARG A . n A 1 91 LEU 91 82 82 LEU LEU A . n A 1 92 GLN 92 83 83 GLN GLN A . n A 1 93 ARG 93 84 84 ARG ARG A . n A 1 94 LYS 94 85 85 LYS LYS A . n A 1 95 LEU 95 86 86 LEU LEU A . n A 1 96 ALA 96 87 87 ALA ALA A . n A 1 97 ARG 97 88 88 ARG ARG A . n A 1 98 LYS 98 89 89 LYS LYS A . n A 1 99 ALA 99 90 90 ALA ALA A . n A 1 100 VAL 100 91 91 VAL VAL A . n A 1 101 ALA 101 92 92 ALA ALA A . n A 1 102 ARG 102 93 ? ? ? A . n A 1 103 LEU 103 94 ? ? ? A . n A 1 104 ARG 104 95 ? ? ? A . n A 1 105 SER 105 96 ? ? ? A . n A 1 106 THR 106 97 ? ? ? A . n A 1 107 GLY 107 98 ? ? ? A . n A 1 108 ARG 108 99 ? ? ? A . n A 1 109 LYS 109 100 ? ? ? A . n A 1 110 LYS 110 101 ? ? ? A . n B 1 1 MET 1 -8 ? ? ? B . n B 1 2 LYS 2 -7 ? ? ? B . n B 1 3 LYS 3 -6 ? ? ? B . n B 1 4 HIS 4 -5 ? ? ? B . n B 1 5 HIS 5 -4 ? ? ? B . n B 1 6 HIS 6 -3 ? ? ? B . n B 1 7 HIS 7 -2 ? ? ? B . n B 1 8 HIS 8 -1 ? ? ? B . n B 1 9 HIS 9 0 ? ? ? B . n B 1 10 MET 10 1 ? ? ? B . n B 1 11 SER 11 2 ? ? ? B . n B 1 12 ALA 12 3 ? ? ? B . n B 1 13 SER 13 4 ? ? ? B . n B 1 14 GLU 14 5 ? ? ? B . n B 1 15 GLY 15 6 ? ? ? B . n B 1 16 MET 16 7 ? ? ? B . n B 1 17 LYS 17 8 ? ? ? B . n B 1 18 PHE 18 9 9 PHE PHE B . n B 1 19 LYS 19 10 10 LYS LYS B . n B 1 20 PHE 20 11 11 PHE PHE B . n B 1 21 HIS 21 12 12 HIS HIS B . n B 1 22 SER 22 13 13 SER SER B . n B 1 23 GLY 23 14 14 GLY GLY B . n B 1 24 GLU 24 15 15 GLU GLU B . n B 1 25 LYS 25 16 16 LYS LYS B . n B 1 26 VAL 26 17 17 VAL VAL B . n B 1 27 LEU 27 18 18 LEU LEU B . n B 1 28 CYS 28 19 19 CYS CYS B . n B 1 29 PHE 29 20 20 PHE PHE B . n B 1 30 GLU 30 21 21 GLU GLU B . n B 1 31 PRO 31 22 22 PRO PRO B . n B 1 32 ASP 32 23 23 ASP ASP B . n B 1 33 PRO 33 24 24 PRO PRO B . n B 1 34 THR 34 25 25 THR THR B . n B 1 35 LYS 35 26 26 LYS LYS B . n B 1 36 ALA 36 27 27 ALA ALA B . n B 1 37 ARG 37 28 28 ARG ARG B . n B 1 38 VAL 38 29 29 VAL VAL B . n B 1 39 LEU 39 30 30 LEU LEU B . n B 1 40 TYR 40 31 31 TYR TYR B . n B 1 41 ASP 41 32 32 ASP ASP B . n B 1 42 ALA 42 33 33 ALA ALA B . n B 1 43 LYS 43 34 34 LYS LYS B . n B 1 44 ILE 44 35 35 ILE ILE B . n B 1 45 VAL 45 36 36 VAL VAL B . n B 1 46 ASP 46 37 37 ASP ASP B . n B 1 47 VAL 47 38 38 VAL VAL B . n B 1 48 ILE 48 39 39 ILE ILE B . n B 1 49 VAL 49 40 40 VAL VAL B . n B 1 50 GLY 50 41 41 GLY GLY B . n B 1 51 LYS 51 42 42 LYS LYS B . n B 1 52 ASP 52 43 43 ASP ASP B . n B 1 53 GLU 53 44 44 GLU GLU B . n B 1 54 LYS 54 45 45 LYS LYS B . n B 1 55 GLY 55 46 46 GLY GLY B . n B 1 56 ARG 56 47 47 ARG ARG B . n B 1 57 LYS 57 48 48 LYS LYS B . n B 1 58 ILE 58 49 49 ILE ILE B . n B 1 59 PRO 59 50 50 PRO PRO B . n B 1 60 GLU 60 51 51 GLU GLU B . n B 1 61 TYR 61 52 52 TYR TYR B . n B 1 62 LEU 62 53 53 LEU LEU B . n B 1 63 ILE 63 54 54 ILE ILE B . n B 1 64 HIS 64 55 55 HIS HIS B . n B 1 65 PHE 65 56 56 PHE PHE B . n B 1 66 ASN 66 57 57 ASN ASN B . n B 1 67 GLY 67 58 58 GLY GLY B . n B 1 68 TRP 68 59 59 TRP TRP B . n B 1 69 ASN 69 60 60 ASN ASN B . n B 1 70 ARG 70 61 61 ARG ARG B . n B 1 71 SER 71 62 62 SER SER B . n B 1 72 TRP 72 63 63 TRP TRP B . n B 1 73 ASP 73 64 64 ASP ASP B . n B 1 74 ARG 74 65 65 ARG ARG B . n B 1 75 TRP 75 66 66 TRP TRP B . n B 1 76 ALA 76 67 67 ALA ALA B . n B 1 77 ALA 77 68 68 ALA ALA B . n B 1 78 GLU 78 69 69 GLU GLU B . n B 1 79 ASP 79 70 70 ASP ASP B . n B 1 80 HIS 80 71 71 HIS HIS B . n B 1 81 VAL 81 72 72 VAL VAL B . n B 1 82 LEU 82 73 73 LEU LEU B . n B 1 83 ARG 83 74 74 ARG ARG B . n B 1 84 ASP 84 75 75 ASP ASP B . n B 1 85 THR 85 76 76 THR THR B . n B 1 86 ASP 86 77 77 ASP ASP B . n B 1 87 GLU 87 78 78 GLU GLU B . n B 1 88 ASN 88 79 79 ASN ASN B . n B 1 89 ARG 89 80 80 ARG ARG B . n B 1 90 ARG 90 81 81 ARG ARG B . n B 1 91 LEU 91 82 82 LEU LEU B . n B 1 92 GLN 92 83 83 GLN GLN B . n B 1 93 ARG 93 84 84 ARG ARG B . n B 1 94 LYS 94 85 85 LYS LYS B . n B 1 95 LEU 95 86 86 LEU LEU B . n B 1 96 ALA 96 87 87 ALA ALA B . n B 1 97 ARG 97 88 88 ARG ARG B . n B 1 98 LYS 98 89 89 LYS LYS B . n B 1 99 ALA 99 90 90 ALA ALA B . n B 1 100 VAL 100 91 91 VAL VAL B . n B 1 101 ALA 101 92 92 ALA ALA B . n B 1 102 ARG 102 93 ? ? ? B . n B 1 103 LEU 103 94 ? ? ? B . n B 1 104 ARG 104 95 ? ? ? B . n B 1 105 SER 105 96 ? ? ? B . n B 1 106 THR 106 97 ? ? ? B . n B 1 107 GLY 107 98 ? ? ? B . n B 1 108 ARG 108 99 ? ? ? B . n B 1 109 LYS 109 100 ? ? ? B . n B 1 110 LYS 110 101 ? ? ? B . n C 2 1 DG 1 1 1 DG DG C . n C 2 2 DC 2 2 2 DC DC C . n C 2 3 DT 3 3 3 DT DT C . n C 2 4 DA 4 4 4 DA DA C . n C 2 5 DG 5 5 5 DG DG C . n C 2 6 DG 6 6 6 DG DG C . n C 2 7 DT 7 7 7 DT DT C . n C 2 8 DC 8 8 8 DC DC C . n C 2 9 DA 9 9 9 DA DA C . n C 2 10 DA 10 10 10 DA DA C . n C 2 11 DA 11 11 11 DA DA C . n C 2 12 DG 12 12 12 DG DG C . n C 2 13 DG 13 13 13 DG DG C . n C 2 14 DT 14 14 14 DT DT C . n C 2 15 DC 15 15 15 DC DC C . n C 2 16 DA 16 16 16 DA DA C . n D 3 1 DC 1 1 1 DC DC D . n D 3 2 DT 2 2 2 DT DT D . n D 3 3 DG 3 3 3 DG DG D . n D 3 4 DA 4 4 4 DA DA D . n D 3 5 DC 5 5 5 DC DC D . n D 3 6 DC 6 6 6 DC DC D . n D 3 7 DT 7 7 7 DT DT D . n D 3 8 DT 8 8 8 DT DT D . n D 3 9 DT 9 9 9 DT DT D . n D 3 10 DG 10 10 10 DG DG D . n D 3 11 DA 11 11 11 DA DA D . n D 3 12 DC 12 12 12 DC DC D . n D 3 13 DC 13 13 13 DC DC D . n D 3 14 DT 14 14 14 DT DT D . n D 3 15 DA 15 15 15 DA DA D . n D 3 16 DG 16 16 16 DG DG D . n E 2 1 DG 1 1 1 DG DG E . n E 2 2 DC 2 2 2 DC DC E . n E 2 3 DT 3 3 3 DT DT E . n E 2 4 DA 4 4 4 DA DA E . n E 2 5 DG 5 5 5 DG DG E . n E 2 6 DG 6 6 6 DG DG E . n E 2 7 DT 7 7 7 DT DT E . n E 2 8 DC 8 8 8 DC DC E . n E 2 9 DA 9 9 9 DA DA E . n E 2 10 DA 10 10 10 DA DA E . n E 2 11 DA 11 11 11 DA DA E . n E 2 12 DG 12 12 12 DG DG E . n E 2 13 DG 13 13 13 DG DG E . n E 2 14 DT 14 14 14 DT DT E . n E 2 15 DC 15 15 15 DC DC E . n E 2 16 DA 16 16 16 DA DA E . n F 3 1 DC 1 1 1 DC DC F . n F 3 2 DT 2 2 2 DT DT F . n F 3 3 DG 3 3 3 DG DG F . n F 3 4 DA 4 4 4 DA DA F . n F 3 5 DC 5 5 5 DC DC F . n F 3 6 DC 6 6 6 DC DC F . n F 3 7 DT 7 7 7 DT DT F . n F 3 8 DT 8 8 8 DT DT F . n F 3 9 DT 9 9 9 DT DT F . n F 3 10 DG 10 10 10 DG DG F . n F 3 11 DA 11 11 11 DA DA F . n F 3 12 DC 12 12 12 DC DC F . n F 3 13 DC 13 13 13 DC DC F . n F 3 14 DT 14 14 14 DT DT F . n F 3 15 DA 15 15 15 DA DA F . n F 3 16 DG 16 16 16 DG DG F . n G 4 1 GLY 1 9 ? ? ? G . n G 4 2 LEU 2 10 ? ? ? G . n G 4 3 GLY 3 11 ? ? ? G . n G 4 4 LYS 4 12 ? ? ? G . n G 4 5 GLY 5 13 ? ? ? G . n G 4 6 GLY 6 14 ? ? ? G . n G 4 7 ALA 7 15 ? ? ? G . n G 4 8 LYS 8 16 ? ? ? G . n G 4 9 ARG 9 17 ? ? ? G . n G 4 10 HIS 10 18 18 HIS HIS G . n G 4 11 ARG 11 19 19 ARG ARG G . n G 4 12 MLZ 12 20 20 MLZ MLZ G . n G 4 13 VAL 13 21 21 VAL VAL G . n G 4 14 LEU 14 22 22 LEU LEU G . n G 4 15 ARG 15 23 ? ? ? G . n G 4 16 ASP 16 24 ? ? ? G . n G 4 17 ASN 17 25 ? ? ? G . n G 4 18 ILE 18 26 ? ? ? G . n G 4 19 GLN 19 27 ? ? ? G . n G 4 20 GLY 20 28 ? ? ? G . n G 4 21 ILE 21 29 ? ? ? G . n G 4 22 THR 22 30 ? ? ? G . n G 4 23 LYS 23 31 ? ? ? G . n G 4 24 TYR 24 32 ? ? ? G . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code H 5 IMD 1 102 1 IMD IMD B . I 6 HOH 1 102 102 HOH HOH A . I 6 HOH 2 103 103 HOH HOH A . I 6 HOH 3 104 104 HOH HOH A . I 6 HOH 4 105 105 HOH HOH A . I 6 HOH 5 106 53 HOH HOH A . I 6 HOH 6 107 56 HOH HOH A . I 6 HOH 7 108 57 HOH HOH A . I 6 HOH 8 109 120 HOH HOH A . I 6 HOH 9 110 67 HOH HOH A . I 6 HOH 10 111 12 HOH HOH A . I 6 HOH 11 112 71 HOH HOH A . I 6 HOH 12 113 113 HOH HOH A . I 6 HOH 13 114 72 HOH HOH A . I 6 HOH 14 115 74 HOH HOH A . I 6 HOH 15 116 79 HOH HOH A . I 6 HOH 16 117 80 HOH HOH A . I 6 HOH 17 118 83 HOH HOH A . I 6 HOH 18 119 88 HOH HOH A . I 6 HOH 19 120 89 HOH HOH A . I 6 HOH 20 121 90 HOH HOH A . I 6 HOH 21 122 4 HOH HOH A . I 6 HOH 22 123 9 HOH HOH A . I 6 HOH 23 124 11 HOH HOH A . I 6 HOH 24 125 125 HOH HOH A . I 6 HOH 25 126 126 HOH HOH A . I 6 HOH 26 127 13 HOH HOH A . I 6 HOH 27 128 16 HOH HOH A . I 6 HOH 28 129 17 HOH HOH A . I 6 HOH 29 130 130 HOH HOH A . I 6 HOH 30 131 131 HOH HOH A . I 6 HOH 31 132 19 HOH HOH A . I 6 HOH 32 133 20 HOH HOH A . I 6 HOH 33 134 46 HOH HOH A . I 6 HOH 34 135 52 HOH HOH A . J 6 HOH 1 103 33 HOH HOH B . J 6 HOH 2 104 34 HOH HOH B . J 6 HOH 3 105 36 HOH HOH B . J 6 HOH 4 106 106 HOH HOH B . J 6 HOH 5 107 107 HOH HOH B . J 6 HOH 6 108 108 HOH HOH B . J 6 HOH 7 109 37 HOH HOH B . J 6 HOH 8 110 38 HOH HOH B . J 6 HOH 9 111 111 HOH HOH B . J 6 HOH 10 112 40 HOH HOH B . J 6 HOH 11 113 54 HOH HOH B . J 6 HOH 12 114 55 HOH HOH B . J 6 HOH 13 115 63 HOH HOH B . J 6 HOH 14 116 64 HOH HOH B . J 6 HOH 15 117 65 HOH HOH B . J 6 HOH 16 118 66 HOH HOH B . J 6 HOH 17 119 119 HOH HOH B . J 6 HOH 18 120 39 HOH HOH B . J 6 HOH 19 121 87 HOH HOH B . J 6 HOH 20 122 5 HOH HOH B . J 6 HOH 21 123 123 HOH HOH B . J 6 HOH 22 124 124 HOH HOH B . J 6 HOH 23 125 6 HOH HOH B . J 6 HOH 24 126 7 HOH HOH B . J 6 HOH 25 127 23 HOH HOH B . J 6 HOH 26 128 94 HOH HOH B . J 6 HOH 27 129 24 HOH HOH B . J 6 HOH 28 130 96 HOH HOH B . J 6 HOH 29 131 98 HOH HOH B . J 6 HOH 30 132 99 HOH HOH B . J 6 HOH 31 133 100 HOH HOH B . J 6 HOH 32 134 134 HOH HOH B . J 6 HOH 33 135 25 HOH HOH B . J 6 HOH 34 136 27 HOH HOH B . K 6 HOH 1 17 3 HOH HOH C . K 6 HOH 2 18 18 HOH HOH C . K 6 HOH 3 19 10 HOH HOH C . K 6 HOH 4 21 21 HOH HOH C . K 6 HOH 5 58 58 HOH HOH C . K 6 HOH 6 59 59 HOH HOH C . K 6 HOH 7 69 69 HOH HOH C . K 6 HOH 8 76 76 HOH HOH C . K 6 HOH 9 78 78 HOH HOH C . K 6 HOH 10 128 128 HOH HOH C . K 6 HOH 11 129 129 HOH HOH C . L 6 HOH 1 17 8 HOH HOH D . L 6 HOH 2 19 14 HOH HOH D . L 6 HOH 3 20 15 HOH HOH D . L 6 HOH 4 68 68 HOH HOH D . L 6 HOH 5 77 77 HOH HOH D . L 6 HOH 6 93 93 HOH HOH D . L 6 HOH 7 101 101 HOH HOH D . L 6 HOH 8 109 60 HOH HOH D . L 6 HOH 9 127 127 HOH HOH D . M 6 HOH 1 29 29 HOH HOH E . M 6 HOH 2 30 30 HOH HOH E . M 6 HOH 3 31 31 HOH HOH E . M 6 HOH 4 48 48 HOH HOH E . M 6 HOH 5 84 84 HOH HOH E . M 6 HOH 6 85 85 HOH HOH E . M 6 HOH 7 97 97 HOH HOH E . M 6 HOH 8 133 133 HOH HOH E . N 6 HOH 1 32 32 HOH HOH F . N 6 HOH 2 42 42 HOH HOH F . N 6 HOH 3 43 43 HOH HOH F . N 6 HOH 4 44 44 HOH HOH F . N 6 HOH 5 45 45 HOH HOH F . N 6 HOH 6 50 50 HOH HOH F . N 6 HOH 7 86 86 HOH HOH F . N 6 HOH 8 132 132 HOH HOH F . O 6 HOH 1 1 1 HOH HOH G . O 6 HOH 2 62 62 HOH HOH G . O 6 HOH 3 116 116 HOH HOH G . O 6 HOH 4 118 118 HOH HOH G . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id G _pdbx_struct_mod_residue.label_comp_id MLZ _pdbx_struct_mod_residue.label_seq_id 12 _pdbx_struct_mod_residue.auth_asym_id G _pdbx_struct_mod_residue.auth_comp_id MLZ _pdbx_struct_mod_residue.auth_seq_id 20 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id LYS _pdbx_struct_mod_residue.details N-METHYL-LYSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-07-21 2 'Structure model' 1 1 2010-08-18 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # _diffrn_reflns.av_R_equivalents 0.049 _diffrn_reflns.number 34440 _diffrn_reflns.diffrn_id 1 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -7.3670 -1.6460 8.8290 0.2402 0.0573 0.1097 0.1732 0.1157 -0.0912 0.0020 0.3842 6.5116 -0.0273 -0.0839 0.9655 -0.1231 0.0381 -0.0087 0.0113 0.0149 0.0707 -0.0386 0.1120 0.1082 'X-RAY DIFFRACTION' 2 ? refined 10.9030 -11.5610 -1.5680 0.2908 -0.1106 0.1096 0.1011 0.1250 0.0521 0.3109 0.3332 4.1654 -0.3180 -0.4393 0.6170 -0.0361 -0.0714 -0.1908 0.2093 0.0002 0.0065 0.5611 -0.0049 0.0359 'X-RAY DIFFRACTION' 3 ? refined -0.5740 -9.8030 21.0610 0.9905 0.5525 0.3580 -0.0002 0.1531 -0.0487 15.1780 8.0741 11.7074 -3.3418 8.1417 5.5467 0.0052 -0.4867 -1.3077 1.1994 -1.3532 -0.2666 6.1175 2.7881 1.3480 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 9 ? ? A 92 ? ? ? ? 'X-RAY DIFFRACTION' 2 1 B 9 ? ? B 92 ? ? ? ? 'X-RAY DIFFRACTION' 3 2 C 1 ? ? C 16 ? ? ? ? 'X-RAY DIFFRACTION' 4 2 E 1 ? ? E 16 ? ? ? ? 'X-RAY DIFFRACTION' 5 2 D 1 ? ? D 16 ? ? ? ? 'X-RAY DIFFRACTION' 6 2 F 1 ? ? F 16 ? ? ? ? 'X-RAY DIFFRACTION' 7 3 G 18 ? ? G 22 ? ? ? ? 'X-RAY DIFFRACTION' 8 3 B 102 ? ? B 102 ? ? ? ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 HKL . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data processing' http://www.hkl-xray.com/ ? ? 2 REFMAC5 5.4.0069 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL . ? ? ? ? 'data scaling' ? ? ? 6 PHASES . ? ? ? ? phasing ? ? ? 7 REFMAC 5.4.0069 ? ? ? ? refinement ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 ND2 A ASN 57 ? ? O A HOH 110 ? ? 1.69 2 1 OP2 F DC 6 ? ? O F HOH 50 ? ? 1.89 3 1 OH A TYR 31 ? ? O A HOH 106 ? ? 2.00 4 1 ND2 B ASN 57 ? ? O B HOH 116 ? ? 2.07 5 1 OE2 A GLU 69 ? ? O A HOH 119 ? ? 2.10 6 1 N B LYS 10 ? ? O B HOH 108 ? ? 2.11 7 1 N B PHE 9 ? ? O B HOH 109 ? ? 2.13 8 1 O E HOH 30 ? ? O E HOH 31 ? ? 2.15 9 1 N A LYS 10 ? ? O A HOH 119 ? ? 2.16 10 1 OP1 C DA 11 ? ? O C HOH 76 ? ? 2.16 11 1 N2 C DG 5 ? ? O2 D DC 13 ? ? 2.18 12 1 OE2 B GLU 69 ? ? O B HOH 108 ? ? 2.18 13 1 OE2 A GLU 51 ? ? O A HOH 121 ? ? 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 "O3'" C DA 16 ? ? 1_555 "O5'" E DG 1 ? ? 1_565 1.98 2 1 O4 F DT 7 ? ? 1_555 O B HOH 130 ? ? 1_655 2.12 3 1 "O5'" C DG 1 ? ? 1_555 "O3'" E DA 16 ? ? 1_546 2.14 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" C DA 9 ? ? "C3'" C DA 9 ? ? 1.377 1.419 -0.042 0.006 N 2 1 "O3'" E DT 7 ? ? "C3'" E DT 7 ? ? 1.383 1.419 -0.036 0.006 N 3 1 "O3'" E DA 9 ? ? "C3'" E DA 9 ? ? 1.524 1.435 0.089 0.013 N 4 1 "O3'" E DG 12 ? ? "C3'" E DG 12 ? ? 1.349 1.419 -0.070 0.006 N 5 1 "O3'" E DG 13 ? ? "C3'" E DG 13 ? ? 1.372 1.419 -0.047 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DG 1 ? ? "C1'" C DG 1 ? ? N9 C DG 1 ? ? 110.61 108.30 2.31 0.30 N 2 1 "O4'" C DC 2 ? ? "C1'" C DC 2 ? ? N1 C DC 2 ? ? 110.34 108.30 2.04 0.30 N 3 1 "O4'" C DG 6 ? ? "C1'" C DG 6 ? ? N9 C DG 6 ? ? 110.77 108.30 2.47 0.30 N 4 1 "O4'" C DT 7 ? ? "C1'" C DT 7 ? ? N1 C DT 7 ? ? 114.82 108.30 6.52 0.30 N 5 1 N3 C DT 14 ? ? C4 C DT 14 ? ? O4 C DT 14 ? ? 123.93 119.90 4.03 0.60 N 6 1 C5 C DT 14 ? ? C4 C DT 14 ? ? O4 C DT 14 ? ? 120.56 124.90 -4.34 0.70 N 7 1 "O4'" D DC 1 ? ? "C1'" D DC 1 ? ? N1 D DC 1 ? ? 111.46 108.30 3.16 0.30 N 8 1 "C3'" D DT 7 ? ? "O3'" D DT 7 ? ? P D DT 8 ? ? 127.11 119.70 7.41 1.20 Y 9 1 "O4'" D DG 10 ? ? "C1'" D DG 10 ? ? N9 D DG 10 ? ? 111.78 108.30 3.48 0.30 N 10 1 "C1'" D DA 11 ? ? "O4'" D DA 11 ? ? "C4'" D DA 11 ? ? 102.12 110.10 -7.98 1.00 N 11 1 "C4'" D DA 11 ? ? "C3'" D DA 11 ? ? "C2'" D DA 11 ? ? 91.57 102.20 -10.63 0.70 N 12 1 "O4'" D DA 11 ? ? "C1'" D DA 11 ? ? N9 D DA 11 ? ? 114.59 108.30 6.29 0.30 N 13 1 "O4'" D DC 12 ? ? "C1'" D DC 12 ? ? N1 D DC 12 ? ? 110.13 108.30 1.83 0.30 N 14 1 "O4'" D DC 13 ? ? "C1'" D DC 13 ? ? N1 D DC 13 ? ? 110.33 108.30 2.03 0.30 N 15 1 "O4'" D DT 14 ? ? "C1'" D DT 14 ? ? N1 D DT 14 ? ? 110.86 108.30 2.56 0.30 N 16 1 "O4'" D DA 15 ? ? "C1'" D DA 15 ? ? N9 D DA 15 ? ? 111.80 108.30 3.50 0.30 N 17 1 "O4'" D DG 16 ? ? "C1'" D DG 16 ? ? N9 D DG 16 ? ? 114.82 108.30 6.52 0.30 N 18 1 "O4'" E DG 1 ? ? "C4'" E DG 1 ? ? "C3'" E DG 1 ? ? 102.04 104.50 -2.46 0.40 N 19 1 "C4'" E DC 2 ? ? "C3'" E DC 2 ? ? "C2'" E DC 2 ? ? 95.17 102.20 -7.03 0.70 N 20 1 "C3'" E DC 2 ? ? "C2'" E DC 2 ? ? "C1'" E DC 2 ? ? 97.38 102.40 -5.02 0.80 N 21 1 "O4'" E DC 2 ? ? "C1'" E DC 2 ? ? N1 E DC 2 ? ? 111.48 108.30 3.18 0.30 N 22 1 "O4'" E DG 5 ? ? "C1'" E DG 5 ? ? N9 E DG 5 ? ? 113.09 108.30 4.79 0.30 N 23 1 "O4'" E DG 6 ? ? "C1'" E DG 6 ? ? N9 E DG 6 ? ? 114.34 108.30 6.04 0.30 N 24 1 C2 E DG 6 ? ? N3 E DG 6 ? ? C4 E DG 6 ? ? 108.40 111.90 -3.50 0.50 N 25 1 N3 E DG 6 ? ? C4 E DG 6 ? ? C5 E DG 6 ? ? 131.98 128.60 3.38 0.50 N 26 1 N3 E DG 6 ? ? C4 E DG 6 ? ? N9 E DG 6 ? ? 121.61 126.00 -4.39 0.60 N 27 1 "C3'" E DA 10 ? ? "O3'" E DA 10 ? ? P E DA 11 ? ? 112.37 119.70 -7.33 1.20 Y 28 1 "O4'" E DA 11 ? ? "C1'" E DA 11 ? ? N9 E DA 11 ? ? 113.00 108.30 4.70 0.30 N 29 1 "O4'" E DG 12 ? ? "C4'" E DG 12 ? ? "C3'" E DG 12 ? ? 109.84 106.00 3.84 0.60 N 30 1 "C1'" E DG 12 ? ? "O4'" E DG 12 ? ? "C4'" E DG 12 ? ? 102.97 110.10 -7.13 1.00 N 31 1 "O4'" E DG 12 ? ? "C1'" E DG 12 ? ? N9 E DG 12 ? ? 110.51 108.30 2.21 0.30 N 32 1 N3 E DG 12 ? ? C4 E DG 12 ? ? C5 E DG 12 ? ? 132.78 128.60 4.18 0.50 N 33 1 C4 E DG 12 ? ? C5 E DG 12 ? ? N7 E DG 12 ? ? 114.33 110.80 3.53 0.40 N 34 1 C5 E DG 12 ? ? N7 E DG 12 ? ? C8 E DG 12 ? ? 100.51 104.30 -3.79 0.50 N 35 1 N9 E DG 12 ? ? C4 E DG 12 ? ? C5 E DG 12 ? ? 102.45 105.40 -2.95 0.40 N 36 1 "O4'" E DT 14 ? ? "C1'" E DT 14 ? ? N1 E DT 14 ? ? 100.66 108.00 -7.34 0.70 N 37 1 "O4'" E DC 15 ? ? "C1'" E DC 15 ? ? "C2'" E DC 15 ? ? 99.93 105.90 -5.97 0.80 N 38 1 "O5'" E DA 16 ? ? "C5'" E DA 16 ? ? "C4'" E DA 16 ? ? 103.66 109.40 -5.74 0.80 N 39 1 "O4'" E DA 16 ? ? "C1'" E DA 16 ? ? N9 E DA 16 ? ? 114.91 108.30 6.61 0.30 N 40 1 N1 F DC 1 ? ? C2 F DC 1 ? ? O2 F DC 1 ? ? 115.18 118.90 -3.72 0.60 N 41 1 C2 F DC 1 ? ? N1 F DC 1 ? ? "C1'" F DC 1 ? ? 111.96 118.80 -6.84 1.10 N 42 1 OP1 F DG 3 ? ? P F DG 3 ? ? OP2 F DG 3 ? ? 129.07 119.60 9.47 1.50 N 43 1 N3 F DG 3 ? ? C4 F DG 3 ? ? N9 F DG 3 ? ? 122.26 126.00 -3.74 0.60 N 44 1 "O4'" F DA 4 ? ? "C1'" F DA 4 ? ? N9 F DA 4 ? ? 102.14 108.00 -5.86 0.70 N 45 1 "O4'" F DC 5 ? ? "C1'" F DC 5 ? ? N1 F DC 5 ? ? 116.41 108.30 8.11 0.30 N 46 1 "O4'" F DC 6 ? ? "C1'" F DC 6 ? ? N1 F DC 6 ? ? 114.60 108.30 6.30 0.30 N 47 1 C2 F DC 6 ? ? N3 F DC 6 ? ? C4 F DC 6 ? ? 116.71 119.90 -3.19 0.50 N 48 1 "O4'" F DT 8 ? ? "C1'" F DT 8 ? ? N1 F DT 8 ? ? 102.96 108.00 -5.04 0.70 N 49 1 "O4'" F DC 12 ? ? "C1'" F DC 12 ? ? N1 F DC 12 ? ? 112.79 108.30 4.49 0.30 N 50 1 "O4'" F DA 15 ? ? "C1'" F DA 15 ? ? N9 F DA 15 ? ? 111.80 108.30 3.50 0.30 N 51 1 "O4'" F DG 16 ? ? "C1'" F DG 16 ? ? N9 F DG 16 ? ? 111.20 108.30 2.90 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG G 19 ? ? 77.85 139.47 2 1 MLZ G 20 ? ? -119.37 -157.88 3 1 VAL G 21 ? ? -32.54 127.10 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A PHE 9 ? CB ? A PHE 18 CB 2 1 Y 1 A PHE 9 ? CG ? A PHE 18 CG 3 1 Y 1 A PHE 9 ? CD1 ? A PHE 18 CD1 4 1 Y 1 A PHE 9 ? CD2 ? A PHE 18 CD2 5 1 Y 1 A PHE 9 ? CE1 ? A PHE 18 CE1 6 1 Y 1 A PHE 9 ? CE2 ? A PHE 18 CE2 7 1 Y 1 A PHE 9 ? CZ ? A PHE 18 CZ 8 1 Y 1 B PHE 9 ? CB ? B PHE 18 CB 9 1 Y 1 B PHE 9 ? CG ? B PHE 18 CG 10 1 Y 1 B PHE 9 ? CD1 ? B PHE 18 CD1 11 1 Y 1 B PHE 9 ? CD2 ? B PHE 18 CD2 12 1 Y 1 B PHE 9 ? CE1 ? B PHE 18 CE1 13 1 Y 1 B PHE 9 ? CE2 ? B PHE 18 CE2 14 1 Y 1 B PHE 9 ? CZ ? B PHE 18 CZ 15 1 Y 1 G VAL 21 ? CG1 ? G VAL 13 CG1 16 1 Y 1 G VAL 21 ? CG2 ? G VAL 13 CG2 17 1 Y 1 G LEU 22 ? CG ? G LEU 14 CG 18 1 Y 1 G LEU 22 ? CD1 ? G LEU 14 CD1 19 1 Y 1 G LEU 22 ? CD2 ? G LEU 14 CD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -8 ? A MET 1 2 1 Y 1 A LYS -7 ? A LYS 2 3 1 Y 1 A LYS -6 ? A LYS 3 4 1 Y 1 A HIS -5 ? A HIS 4 5 1 Y 1 A HIS -4 ? A HIS 5 6 1 Y 1 A HIS -3 ? A HIS 6 7 1 Y 1 A HIS -2 ? A HIS 7 8 1 Y 1 A HIS -1 ? A HIS 8 9 1 Y 1 A HIS 0 ? A HIS 9 10 1 Y 1 A MET 1 ? A MET 10 11 1 Y 1 A SER 2 ? A SER 11 12 1 Y 1 A ALA 3 ? A ALA 12 13 1 Y 1 A SER 4 ? A SER 13 14 1 Y 1 A GLU 5 ? A GLU 14 15 1 Y 1 A GLY 6 ? A GLY 15 16 1 Y 1 A MET 7 ? A MET 16 17 1 Y 1 A LYS 8 ? A LYS 17 18 1 Y 1 A ARG 93 ? A ARG 102 19 1 Y 1 A LEU 94 ? A LEU 103 20 1 Y 1 A ARG 95 ? A ARG 104 21 1 Y 1 A SER 96 ? A SER 105 22 1 Y 1 A THR 97 ? A THR 106 23 1 Y 1 A GLY 98 ? A GLY 107 24 1 Y 1 A ARG 99 ? A ARG 108 25 1 Y 1 A LYS 100 ? A LYS 109 26 1 Y 1 A LYS 101 ? A LYS 110 27 1 Y 1 B MET -8 ? B MET 1 28 1 Y 1 B LYS -7 ? B LYS 2 29 1 Y 1 B LYS -6 ? B LYS 3 30 1 Y 1 B HIS -5 ? B HIS 4 31 1 Y 1 B HIS -4 ? B HIS 5 32 1 Y 1 B HIS -3 ? B HIS 6 33 1 Y 1 B HIS -2 ? B HIS 7 34 1 Y 1 B HIS -1 ? B HIS 8 35 1 Y 1 B HIS 0 ? B HIS 9 36 1 Y 1 B MET 1 ? B MET 10 37 1 Y 1 B SER 2 ? B SER 11 38 1 Y 1 B ALA 3 ? B ALA 12 39 1 Y 1 B SER 4 ? B SER 13 40 1 Y 1 B GLU 5 ? B GLU 14 41 1 Y 1 B GLY 6 ? B GLY 15 42 1 Y 1 B MET 7 ? B MET 16 43 1 Y 1 B LYS 8 ? B LYS 17 44 1 Y 1 B ARG 93 ? B ARG 102 45 1 Y 1 B LEU 94 ? B LEU 103 46 1 Y 1 B ARG 95 ? B ARG 104 47 1 Y 1 B SER 96 ? B SER 105 48 1 Y 1 B THR 97 ? B THR 106 49 1 Y 1 B GLY 98 ? B GLY 107 50 1 Y 1 B ARG 99 ? B ARG 108 51 1 Y 1 B LYS 100 ? B LYS 109 52 1 Y 1 B LYS 101 ? B LYS 110 53 1 Y 1 G GLY 9 ? G GLY 1 54 1 Y 1 G LEU 10 ? G LEU 2 55 1 Y 1 G GLY 11 ? G GLY 3 56 1 Y 1 G LYS 12 ? G LYS 4 57 1 Y 1 G GLY 13 ? G GLY 5 58 1 Y 1 G GLY 14 ? G GLY 6 59 1 Y 1 G ALA 15 ? G ALA 7 60 1 Y 1 G LYS 16 ? G LYS 8 61 1 Y 1 G ARG 17 ? G ARG 9 62 1 Y 1 G ARG 23 ? G ARG 15 63 1 Y 1 G ASP 24 ? G ASP 16 64 1 Y 1 G ASN 25 ? G ASN 17 65 1 Y 1 G ILE 26 ? G ILE 18 66 1 Y 1 G GLN 27 ? G GLN 19 67 1 Y 1 G GLY 28 ? G GLY 20 68 1 Y 1 G ILE 29 ? G ILE 21 69 1 Y 1 G THR 30 ? G THR 22 70 1 Y 1 G LYS 31 ? G LYS 23 71 1 Y 1 G TYR 32 ? G TYR 24 # _cell_measurement.reflns_used 34440 _cell_measurement.entry_id 3M9P # _diffrn_measurement.details '1.00 degrees, 4.0 sec, detector distance 310.00 mm' _diffrn_measurement.diffrn_id 1 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3M9P 'double helix' 3M9P 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DC 2 1_555 D DG 16 1_555 0.294 -0.371 0.560 -3.800 -12.603 2.698 1 C_DC2:DG16_D C 2 ? D 16 ? 19 1 1 C DT 3 1_555 D DA 15 1_555 0.015 -0.579 -0.198 4.267 -9.844 -2.862 2 C_DT3:DA15_D C 3 ? D 15 ? 20 1 1 C DA 4 1_555 D DT 14 1_555 0.851 -0.404 -0.347 -2.831 -9.973 -1.592 3 C_DA4:DT14_D C 4 ? D 14 ? 20 1 1 C DG 5 1_555 D DC 13 1_555 -0.150 -0.287 -0.102 1.240 -10.842 12.617 4 C_DG5:DC13_D C 5 ? D 13 ? 22 1 1 C DG 6 1_555 D DC 12 1_555 0.440 -0.209 -0.356 -3.659 -13.446 3.768 5 C_DG6:DC12_D C 6 ? D 12 ? 19 1 1 C DT 7 1_555 D DA 11 1_555 -0.034 -0.506 -0.241 2.068 -7.934 -6.799 6 C_DT7:DA11_D C 7 ? D 11 ? 20 1 1 C DC 8 1_555 D DG 10 1_555 0.168 0.083 -0.298 7.360 -13.804 2.136 7 C_DC8:DG10_D C 8 ? D 10 ? 19 1 1 C DA 9 1_555 D DT 9 1_555 0.448 -0.187 0.020 7.253 -5.691 0.272 8 C_DA9:DT9_D C 9 ? D 9 ? 20 1 1 C DA 10 1_555 D DT 8 1_555 0.339 -0.231 -0.303 -3.909 -20.013 8.463 9 C_DA10:DT8_D C 10 ? D 8 ? 20 1 1 C DA 11 1_555 D DT 7 1_555 -0.075 -0.367 -0.026 -3.695 -12.454 1.851 10 C_DA11:DT7_D C 11 ? D 7 ? 20 1 1 C DG 12 1_555 D DC 6 1_555 0.727 -0.476 0.348 -5.817 -5.576 -5.740 11 C_DG12:DC6_D C 12 ? D 6 ? 19 1 1 C DG 13 1_555 D DC 5 1_555 1.238 -0.112 0.015 -7.079 -12.860 9.702 12 C_DG13:DC5_D C 13 ? D 5 ? ? 1 1 C DT 14 1_555 D DA 4 1_555 -0.213 -0.382 -0.285 0.776 -17.507 8.328 13 C_DT14:DA4_D C 14 ? D 4 ? 20 1 1 C DC 15 1_555 D DG 3 1_555 -0.069 -0.123 -0.295 -6.025 -7.148 1.362 14 C_DC15:DG3_D C 15 ? D 3 ? 19 1 1 C DA 16 1_555 D DT 2 1_555 -0.098 -0.333 -0.296 -0.229 -13.463 -3.916 15 C_DA16:DT2_D C 16 ? D 2 ? 20 1 1 E DC 2 1_555 F DG 16 1_555 -0.964 -0.191 -0.107 -1.770 -9.835 -4.717 16 E_DC2:DG16_F E 2 ? F 16 ? 19 1 1 E DT 3 1_555 F DA 15 1_555 -0.597 -0.229 -0.179 -7.455 -11.410 5.924 17 E_DT3:DA15_F E 3 ? F 15 ? 20 1 1 E DA 4 1_555 F DT 14 1_555 0.586 -0.271 -0.266 -5.339 -2.162 6.235 18 E_DA4:DT14_F E 4 ? F 14 ? 20 1 1 E DG 5 1_555 F DC 13 1_555 0.314 -0.370 0.150 -2.389 -9.674 5.823 19 E_DG5:DC13_F E 5 ? F 13 ? 19 1 1 E DG 6 1_555 F DC 12 1_555 0.120 -0.407 0.492 5.174 -13.300 -3.465 20 E_DG6:DC12_F E 6 ? F 12 ? 19 1 1 E DT 7 1_555 F DA 11 1_555 -0.389 -0.056 -0.189 1.835 -13.512 3.724 21 E_DT7:DA11_F E 7 ? F 11 ? 20 1 1 E DC 8 1_555 F DG 10 1_555 0.411 -0.158 -0.623 -6.192 -9.460 5.161 22 E_DC8:DG10_F E 8 ? F 10 ? 19 1 1 E DA 9 1_555 F DT 9 1_555 0.132 -0.443 -0.534 -4.872 -16.951 -5.637 23 E_DA9:DT9_F E 9 ? F 9 ? 20 1 1 E DA 10 1_555 F DT 8 1_555 0.205 0.086 -0.166 -11.977 -6.017 3.953 24 E_DA10:DT8_F E 10 ? F 8 ? 20 1 1 E DA 11 1_555 F DT 7 1_555 0.687 -0.123 0.222 0.054 -15.254 7.792 25 E_DA11:DT7_F E 11 ? F 7 ? 20 1 1 E DG 12 1_555 F DC 6 1_555 0.190 0.098 0.369 0.019 -22.647 4.993 26 E_DG12:DC6_F E 12 ? F 6 ? 19 1 1 E DG 13 1_555 F DC 5 1_555 0.752 -0.419 0.005 -7.529 -9.639 0.130 27 E_DG13:DC5_F E 13 ? F 5 ? 19 1 1 E DT 14 1_555 F DA 4 1_555 0.117 0.042 -0.219 4.297 -8.619 3.769 28 E_DT14:DA4_F E 14 ? F 4 ? 20 1 1 E DC 15 1_555 F DG 3 1_555 0.165 -0.453 -0.476 2.368 -16.697 -4.115 29 E_DC15:DG3_F E 15 ? F 3 ? 19 1 1 E DA 16 1_555 F DT 2 1_555 -0.645 -0.311 -0.276 4.679 -14.188 -3.106 30 E_DA16:DT2_F E 16 ? F 2 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DC 2 1_555 D DG 16 1_555 C DT 3 1_555 D DA 15 1_555 -0.650 -0.381 3.041 2.756 3.629 31.711 -1.290 1.633 2.915 6.599 -5.012 32.029 1 CC_DC2DT3:DA15DG16_DD C 2 ? D 16 ? C 3 ? D 15 ? 1 C DT 3 1_555 D DA 15 1_555 C DA 4 1_555 D DT 14 1_555 -0.293 0.447 3.563 0.897 4.035 44.603 0.185 0.474 3.582 5.302 -1.179 44.784 2 CC_DT3DA4:DT14DA15_DD C 3 ? D 15 ? C 4 ? D 14 ? 1 C DA 4 1_555 D DT 14 1_555 C DG 5 1_555 D DC 13 1_555 0.440 0.388 3.085 -0.039 4.612 29.385 -0.165 -0.866 3.107 9.021 0.077 29.737 3 CC_DA4DG5:DC13DT14_DD C 4 ? D 14 ? C 5 ? D 13 ? 1 C DG 5 1_555 D DC 13 1_555 C DG 6 1_555 D DC 12 1_555 -0.424 0.006 3.420 -1.920 8.163 35.263 -1.196 0.398 3.356 13.244 3.115 36.215 4 CC_DG5DG6:DC12DC13_DD C 5 ? D 13 ? C 6 ? D 12 ? 1 C DG 6 1_555 D DC 12 1_555 C DT 7 1_555 D DA 11 1_555 -0.158 -0.670 3.145 0.683 -0.877 29.386 -1.138 0.453 3.159 -1.728 -1.346 29.406 5 CC_DG6DT7:DA11DC12_DD C 6 ? D 12 ? C 7 ? D 11 ? 1 C DT 7 1_555 D DA 11 1_555 C DC 8 1_555 D DG 10 1_555 0.170 -0.442 3.203 -0.048 6.627 33.148 -1.797 -0.301 3.060 11.473 0.082 33.786 6 CC_DT7DC8:DG10DA11_DD C 7 ? D 11 ? C 8 ? D 10 ? 1 C DC 8 1_555 D DG 10 1_555 C DA 9 1_555 D DT 9 1_555 -0.326 0.758 3.342 -0.894 10.115 35.412 -0.253 0.387 3.430 16.221 1.434 36.794 7 CC_DC8DA9:DT9DG10_DD C 8 ? D 10 ? C 9 ? D 9 ? 1 C DA 9 1_555 D DT 9 1_555 C DA 10 1_555 D DT 8 1_555 0.259 0.001 3.538 6.212 10.020 34.574 -1.514 0.525 3.403 16.283 -10.096 36.471 8 CC_DA9DA10:DT8DT9_DD C 9 ? D 9 ? C 10 ? D 8 ? 1 C DA 10 1_555 D DT 8 1_555 C DA 11 1_555 D DT 7 1_555 0.213 -0.059 3.302 -1.588 6.969 28.862 -1.587 -0.750 3.185 13.717 3.126 29.716 9 CC_DA10DA11:DT7DT8_DD C 10 ? D 8 ? C 11 ? D 7 ? 1 C DA 11 1_555 D DT 7 1_555 C DG 12 1_555 D DC 6 1_555 -0.200 -0.279 3.215 -4.350 2.385 37.698 -0.727 -0.238 3.195 3.672 6.697 38.011 10 CC_DA11DG12:DC6DT7_DD C 11 ? D 7 ? C 12 ? D 6 ? 1 C DG 12 1_555 D DC 6 1_555 C DG 13 1_555 D DC 5 1_555 0.221 -0.195 3.157 4.103 6.571 36.298 -1.155 0.182 3.082 10.401 -6.496 37.089 11 CC_DG12DG13:DC5DC6_DD C 12 ? D 6 ? C 13 ? D 5 ? 1 C DG 13 1_555 D DC 5 1_555 C DT 14 1_555 D DA 4 1_555 -0.688 -0.587 3.055 0.458 4.693 23.578 -2.791 1.788 2.871 11.340 -1.108 24.038 12 CC_DG13DT14:DA4DC5_DD C 13 ? D 5 ? C 14 ? D 4 ? 1 C DT 14 1_555 D DA 4 1_555 C DC 15 1_555 D DG 3 1_555 0.012 -0.072 3.429 -0.312 7.620 35.707 -1.220 -0.064 3.344 12.256 0.503 36.486 13 CC_DT14DC15:DG3DA4_DD C 14 ? D 4 ? C 15 ? D 3 ? 1 C DC 15 1_555 D DG 3 1_555 C DA 16 1_555 D DT 2 1_555 -0.069 0.678 3.247 -0.423 15.294 32.084 -1.229 0.049 3.232 25.912 0.717 35.459 14 CC_DC15DA16:DT2DG3_DD C 15 ? D 3 ? C 16 ? D 2 ? 1 E DC 2 1_555 F DG 16 1_555 E DT 3 1_555 F DA 15 1_555 0.279 -0.314 3.395 1.703 7.907 34.218 -1.738 -0.200 3.253 13.210 -2.846 35.133 15 EE_DC2DT3:DA15DG16_FF E 2 ? F 16 ? E 3 ? F 15 ? 1 E DT 3 1_555 F DA 15 1_555 E DA 4 1_555 F DT 14 1_555 -0.030 1.247 3.168 -1.702 3.983 46.420 1.247 -0.102 3.258 5.040 2.154 46.611 16 EE_DT3DA4:DT14DA15_FF E 3 ? F 15 ? E 4 ? F 14 ? 1 E DA 4 1_555 F DT 14 1_555 E DG 5 1_555 F DC 13 1_555 0.130 0.150 3.203 -3.189 2.720 31.604 -0.213 -0.806 3.176 4.967 5.823 31.873 17 EE_DA4DG5:DC13DT14_FF E 4 ? F 14 ? E 5 ? F 13 ? 1 E DG 5 1_555 F DC 13 1_555 E DG 6 1_555 F DC 12 1_555 -0.040 -0.505 3.146 -1.890 2.427 33.786 -1.237 -0.221 3.101 4.166 3.244 33.922 18 EE_DG5DG6:DC12DC13_FF E 5 ? F 13 ? E 6 ? F 12 ? 1 E DG 6 1_555 F DC 12 1_555 E DT 7 1_555 F DA 11 1_555 -0.200 -0.987 3.244 5.496 6.943 27.644 -3.426 1.552 2.826 14.081 -11.146 29.001 19 EE_DG6DT7:DA11DC12_FF E 6 ? F 12 ? E 7 ? F 11 ? 1 E DT 7 1_555 F DA 11 1_555 E DC 8 1_555 F DG 10 1_555 0.381 -0.477 3.518 7.294 6.058 35.913 -1.622 0.451 3.406 9.619 -11.582 37.104 20 EE_DT7DC8:DG10DA11_FF E 7 ? F 11 ? E 8 ? F 10 ? 1 E DC 8 1_555 F DG 10 1_555 E DA 9 1_555 F DT 9 1_555 -0.260 0.592 3.422 0.958 9.856 34.217 -0.570 0.575 3.447 16.332 -1.587 35.580 21 EE_DC8DA9:DT9DG10_FF E 8 ? F 10 ? E 9 ? F 9 ? 1 E DA 9 1_555 F DT 9 1_555 E DA 10 1_555 F DT 8 1_555 0.059 -0.312 3.451 -2.246 4.485 34.625 -1.229 -0.454 3.375 7.486 3.750 34.976 22 EE_DA9DA10:DT8DT9_FF E 9 ? F 9 ? E 10 ? F 8 ? 1 E DA 10 1_555 F DT 8 1_555 E DA 11 1_555 F DT 7 1_555 0.530 0.081 2.992 -1.266 4.762 29.666 -0.736 -1.258 2.944 9.221 2.450 30.063 23 EE_DA10DA11:DT7DT8_FF E 10 ? F 8 ? E 11 ? F 7 ? 1 E DA 11 1_555 F DT 7 1_555 E DG 12 1_555 F DC 6 1_555 -0.224 -0.469 3.208 -0.984 11.296 32.870 -2.448 0.231 2.900 19.263 1.677 34.719 24 EE_DA11DG12:DC6DT7_FF E 11 ? F 7 ? E 12 ? F 6 ? 1 E DG 12 1_555 F DC 6 1_555 E DG 13 1_555 F DC 5 1_555 -0.742 -0.564 3.379 -1.128 10.544 41.801 -1.826 0.897 3.171 14.499 1.551 43.067 25 EE_DG12DG13:DC5DC6_FF E 12 ? F 6 ? E 13 ? F 5 ? 1 E DG 13 1_555 F DC 5 1_555 E DT 14 1_555 F DA 4 1_555 -0.552 -0.577 3.012 0.614 1.366 22.578 -1.925 1.611 2.956 3.484 -1.566 22.627 26 EE_DG13DT14:DA4DC5_FF E 13 ? F 5 ? E 14 ? F 4 ? 1 E DT 14 1_555 F DA 4 1_555 E DC 15 1_555 F DG 3 1_555 0.149 -0.183 3.301 1.817 4.269 35.615 -0.911 0.020 3.261 6.943 -2.955 35.906 27 EE_DT14DC15:DG3DA4_FF E 14 ? F 4 ? E 15 ? F 3 ? 1 E DC 15 1_555 F DG 3 1_555 E DA 16 1_555 F DT 2 1_555 -0.147 0.695 3.343 -1.990 7.850 28.582 -0.382 -0.154 3.411 15.511 3.932 29.684 28 EE_DC15DA16:DT2DG3_FF E 15 ? F 3 ? E 16 ? F 2 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 5 IMIDAZOLE IMD 6 water HOH #