HEADER OXIDOREDUCTASE 22-MAR-10 3M9V TITLE X-RAY STRUCTURE OF A KIJD3 IN COMPLEX WITH DTDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAD-DEPENDENT OXIDOREDUCTASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACTINOMADURA KIJANIATA; SOURCE 3 ORGANISM_TAXID: 46161; SOURCE 4 GENE: KIJD3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA2 DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS KIJD3, FATTY ACYL-COA DEHYDROGENASE FAMILY, KIJANOSE, KIJANIMICIN, KEYWDS 2 FAD, FLAVOPROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.A.BRUENDER,J.B.THODEN,H.M.HOLDEN REVDAT 5 03-APR-24 3M9V 1 REMARK REVDAT 4 21-FEB-24 3M9V 1 REMARK SEQADV REVDAT 3 08-NOV-17 3M9V 1 REMARK REVDAT 2 02-JUN-10 3M9V 1 JRNL REVDAT 1 07-APR-10 3M9V 0 JRNL AUTH N.A.BRUENDER,J.B.THODEN,H.M.HOLDEN JRNL TITL X-RAY STRUCTURE OF KIJD3, A KEY ENZYME INVOLVED IN THE JRNL TITL 2 BIOSYNTHESIS OF D-KIJANOSE. JRNL REF BIOCHEMISTRY V. 49 3517 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20334431 JRNL DOI 10.1021/BI100318V REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 26300 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1420 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1579 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.1980 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.2360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2886 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 108 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.08000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : -0.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.166 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.160 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.574 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2984 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4074 ; 1.995 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 395 ; 6.338 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;29.216 ;21.833 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 452 ;15.898 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;18.061 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 479 ; 0.137 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2266 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1943 ; 1.697 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3099 ; 2.601 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1041 ; 4.327 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 971 ; 6.828 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3M9V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000058290. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NICKEL FILTER REMARK 200 OPTICS : SUPPER MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS HI-STAR REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27721 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 3.490 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 10.7300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.19600 REMARK 200 R SYM FOR SHELL (I) : 0.19600 REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: IN-HOUSE MIR MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.3-1.6 M AMMONIUM SULFATE 10 MM DTDP REMARK 280 -PHENOL, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.47400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.24350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 76.61000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.47400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.24350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 76.61000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.47400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.24350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 76.61000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.47400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 41.24350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 76.61000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -130.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 PRO A 3 REMARK 465 TRP A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 ARG A 7 REMARK 465 GLN A 8 REMARK 465 ASP A 9 REMARK 465 THR A 188 REMARK 465 ASP A 189 REMARK 465 VAL A 243 REMARK 465 GLY A 244 REMARK 465 GLU A 404 REMARK 465 ARG A 405 REMARK 465 ASP A 406 REMARK 465 ASN A 407 REMARK 465 ASN A 408 REMARK 465 TYR A 409 REMARK 465 MET A 410 REMARK 465 SER A 411 REMARK 465 THR A 412 REMARK 465 TRP A 413 REMARK 465 ALA A 414 REMARK 465 LYS A 415 REMARK 465 ARG A 416 REMARK 465 SER A 417 REMARK 465 GLY A 418 REMARK 465 GLY A 419 REMARK 465 ASN A 420 REMARK 465 GLY A 421 REMARK 465 LYS A 422 REMARK 465 SER A 423 REMARK 465 ALA A 424 REMARK 465 ASP A 425 REMARK 465 ALA A 426 REMARK 465 ALA A 427 REMARK 465 GLY A 428 REMARK 465 PRO A 429 REMARK 465 ARG A 430 REMARK 465 ARG A 431 REMARK 465 PRO A 432 REMARK 465 THR A 433 REMARK 465 PRO A 434 REMARK 465 THR A 435 REMARK 465 SER A 436 REMARK 465 ARG A 437 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 93 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 PRO A 242 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 172 -3.30 73.99 REMARK 500 ASP A 186 59.24 -170.29 REMARK 500 ARG A 240 -141.99 -96.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TYD A 901 DBREF 3M9V A 1 437 UNP B3TMR1 B3TMR1_9ACTO 1 437 SEQADV 3M9V GLY A -1 UNP B3TMR1 EXPRESSION TAG SEQADV 3M9V HIS A 0 UNP B3TMR1 EXPRESSION TAG SEQRES 1 A 439 GLY HIS MET PRO PRO TRP THR ALA ARG GLN ASP SER THR SEQRES 2 A 439 THR GLY LEU TYR ALA PRO VAL THR PRO ALA GLY ARG VAL SEQRES 3 A 439 LEU LEU ASP ARG LEU ALA ALA HIS LEU PRO ARG ILE ARG SEQRES 4 A 439 SER THR ALA ALA GLU HIS ASP ARG ASP GLY THR PHE PRO SEQRES 5 A 439 THR ASP THR PHE ASP ALA LEU ARG LYS ASP GLY LEU MET SEQRES 6 A 439 GLY ALA THR VAL PRO ALA GLU LEU GLY GLY LEU GLY VAL SEQRES 7 A 439 ASP ARG LEU TYR ASP VAL ALA VAL ALA LEU LEU ALA VAL SEQRES 8 A 439 ALA ARG ALA ASP ALA SER THR ALA LEU ALA LEU HIS MET SEQRES 9 A 439 GLN LEU SER ARG GLY LEU THR LEU GLY TYR GLU TRP ARG SEQRES 10 A 439 HIS GLY ASP GLU ARG ALA ARG THR LEU ALA GLU ARG ILE SEQRES 11 A 439 LEU ARG GLY MET VAL ALA GLY ASP ALA VAL VAL CYS SER SEQRES 12 A 439 GLY ILE LYS ASP HIS HIS THR ALA VAL THR THR LEU ARG SEQRES 13 A 439 PRO ASP GLY ALA GLY GLY TRP LEU LEU SER GLY ARG LYS SEQRES 14 A 439 THR LEU VAL SER MET ALA PRO VAL GLY THR HIS PHE VAL SEQRES 15 A 439 ILE ASN ALA ARG THR ASP GLY THR ASP GLY PRO PRO ARG SEQRES 16 A 439 LEU ALA SER PRO VAL VAL THR ARG ASP THR PRO GLY PHE SEQRES 17 A 439 THR VAL LEU ASP ASN TRP ASP GLY LEU GLY MET ARG ALA SEQRES 18 A 439 SER GLY THR VAL ASP ILE VAL PHE ASP ASP CYS PRO ILE SEQRES 19 A 439 PRO ALA ASP HIS VAL LEU MET ARG ASP PRO VAL GLY ALA SEQRES 20 A 439 ARG ASN ASP ALA VAL LEU ALA GLY GLN THR VAL SER SER SEQRES 21 A 439 VAL SER VAL LEU GLY VAL TYR VAL GLY VAL ALA GLN ALA SEQRES 22 A 439 ALA TYR ASP THR ALA VAL ALA ALA LEU GLU ARG ARG PRO SEQRES 23 A 439 GLU PRO PRO GLN ALA ALA ALA LEU THR LEU VAL ALA GLU SEQRES 24 A 439 ILE ASP SER ARG LEU TYR ALA LEU ARG ALA THR ALA GLY SEQRES 25 A 439 SER ALA LEU THR ALA ALA ASP ALA LEU SER ALA ASP LEU SEQRES 26 A 439 SER GLY ASP MET ASP GLU ARG GLY ARG GLN MET MET ARG SEQRES 27 A 439 HIS PHE GLN CYS ALA LYS LEU ALA VAL ASN ARG LEU ALA SEQRES 28 A 439 PRO GLU ILE VAL SER ASP CYS LEU SER LEU VAL GLY GLY SEQRES 29 A 439 ALA SER TYR THR ALA GLY HIS PRO LEU ALA ARG LEU LEU SEQRES 30 A 439 ARG ASP VAL GLN ALA GLY ARG PHE MET GLN PRO TYR ALA SEQRES 31 A 439 TYR VAL ASP ALA VAL ASP PHE LEU SER ALA GLN ALA LEU SEQRES 32 A 439 GLY ILE GLU ARG ASP ASN ASN TYR MET SER THR TRP ALA SEQRES 33 A 439 LYS ARG SER GLY GLY ASN GLY LYS SER ALA ASP ALA ALA SEQRES 34 A 439 GLY PRO ARG ARG PRO THR PRO THR SER ARG HET TYD A 901 25 HETNAM TYD THYMIDINE-5'-DIPHOSPHATE FORMUL 2 TYD C10 H16 N2 O11 P2 FORMUL 3 HOH *108(H2 O) HELIX 1 1 THR A 19 ALA A 31 1 13 HELIX 2 2 HIS A 32 GLY A 47 1 16 HELIX 3 3 PRO A 50 ASP A 60 1 11 HELIX 4 4 GLY A 61 ALA A 65 5 5 HELIX 5 5 PRO A 68 GLY A 72 5 5 HELIX 6 6 ARG A 78 ASP A 93 1 16 HELIX 7 7 ASP A 93 GLY A 117 1 25 HELIX 8 8 ASP A 118 ALA A 134 1 17 HELIX 9 9 MET A 172 GLY A 176 5 5 HELIX 10 10 PRO A 233 ASP A 235 5 3 HELIX 11 11 ASN A 247 ALA A 249 5 3 HELIX 12 12 VAL A 250 VAL A 259 1 10 HELIX 13 13 VAL A 261 ARG A 282 1 22 HELIX 14 14 GLN A 288 ASP A 322 1 35 HELIX 15 15 ASP A 326 GLY A 361 1 36 HELIX 16 16 GLY A 362 THR A 366 5 5 HELIX 17 17 HIS A 369 VAL A 378 1 10 HELIX 18 18 GLN A 379 PHE A 383 5 5 HELIX 19 19 ALA A 388 LEU A 401 1 14 SHEET 1 A 8 VAL A 139 GLY A 142 0 SHEET 2 A 8 HIS A 178 ILE A 181 1 O VAL A 180 N GLY A 142 SHEET 3 A 8 LEU A 194 THR A 200 -1 O VAL A 199 N PHE A 179 SHEET 4 A 8 ALA A 183 THR A 185 -1 N ALA A 183 O ALA A 195 SHEET 5 A 8 THR A 152 PRO A 155 1 N LEU A 153 O ARG A 184 SHEET 6 A 8 TRP A 161 VAL A 170 -1 O LEU A 162 N ARG A 154 SHEET 7 A 8 VAL A 223 ILE A 232 -1 O VAL A 223 N VAL A 170 SHEET 8 A 8 PHE A 206 VAL A 208 -1 N THR A 207 O VAL A 226 SHEET 1 B 6 LYS A 144 ASP A 145 0 SHEET 2 B 6 TRP A 161 VAL A 170 -1 O THR A 168 N LYS A 144 SHEET 3 B 6 THR A 152 PRO A 155 -1 N ARG A 154 O LEU A 162 SHEET 4 B 6 ALA A 183 THR A 185 1 O ARG A 184 N LEU A 153 SHEET 5 B 6 LEU A 194 THR A 200 -1 O ALA A 195 N ALA A 183 SHEET 6 B 6 VAL A 237 MET A 239 -1 O LEU A 238 N SER A 196 CISPEP 1 GLN A 385 PRO A 386 0 -1.91 CISPEP 2 PRO A 386 TYR A 387 0 -23.30 SITE 1 AC1 12 THR A 109 TYR A 112 GLU A 113 ASN A 182 SITE 2 AC1 12 ARG A 240 VAL A 250 ALA A 252 GLY A 253 SITE 3 AC1 12 GLN A 254 SER A 257 ARG A 330 HOH A 519 CRYST1 72.948 82.487 153.220 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013708 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012123 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006527 0.00000