HEADER IMMUNE SYSTEM 23-MAR-10 3MAC TITLE CRYSTAL STRUCTURE OF GP41-DERIVED PROTEIN COMPLEXED WITH FAB 8062 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSMEMBRANE GLYCOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB8062; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: FAB8062; COMPND 11 CHAIN: L; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS GP41, FAB8062, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.LI,E.GUSTCHINA,J.LOUIS,A.GUSTCHINA,A.WLODAWER,M.CLORE REVDAT 3 06-SEP-23 3MAC 1 REMARK REVDAT 2 08-NOV-17 3MAC 1 REMARK REVDAT 1 08-DEC-10 3MAC 0 JRNL AUTH E.GUSTCHINA,M.LI,J.M.LOUIS,D.E.ANDERSON,J.LLOYD,C.FRISCH, JRNL AUTH 2 C.A.BEWLEY,A.GUSTCHINA,A.WLODAWER,G.M.CLORE JRNL TITL STRUCTURAL BASIS OF HIV-1 NEUTRALIZATION BY AFFINITY MATURED JRNL TITL 2 FABS DIRECTED AGAINST THE INTERNAL TRIMERIC COILED-COIL OF JRNL TITL 3 GP41. JRNL REF PLOS PATHOG. V. 6 01182 2010 JRNL REFN ISSN 1553-7366 JRNL PMID 21085615 JRNL DOI 10.1371/JOURNAL.PPAT.1001182 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0104 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 22917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 728 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1525 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.3690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4798 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 69 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.40000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : -1.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.58000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.602 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.310 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.224 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.692 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4900 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6669 ; 1.190 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 615 ; 6.003 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 215 ;34.243 ;25.628 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 808 ;18.280 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;15.336 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 754 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3697 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3085 ; 1.405 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4977 ; 2.390 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1815 ; 1.801 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1691 ; 2.649 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 104 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6812 36.2614 34.4561 REMARK 3 T TENSOR REMARK 3 T11: 0.2516 T22: 0.1249 REMARK 3 T33: 0.1245 T12: 0.0390 REMARK 3 T13: -0.0260 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 4.2947 L22: 3.8639 REMARK 3 L33: 5.4160 L12: -0.4064 REMARK 3 L13: 0.5216 L23: 0.8604 REMARK 3 S TENSOR REMARK 3 S11: -0.0278 S12: -0.0713 S13: 0.3297 REMARK 3 S21: -0.1937 S22: 0.1238 S23: 0.2948 REMARK 3 S31: -0.9098 S32: -0.3249 S33: -0.0960 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 105 L 211 REMARK 3 ORIGIN FOR THE GROUP (A): 18.9124 36.5450 70.8141 REMARK 3 T TENSOR REMARK 3 T11: 0.1448 T22: 0.0500 REMARK 3 T33: 0.0658 T12: 0.0171 REMARK 3 T13: 0.0124 T23: -0.0173 REMARK 3 L TENSOR REMARK 3 L11: 4.0079 L22: 2.3309 REMARK 3 L33: 6.2157 L12: -1.0293 REMARK 3 L13: 1.2602 L23: -1.0144 REMARK 3 S TENSOR REMARK 3 S11: 0.1585 S12: 0.0471 S13: 0.2019 REMARK 3 S21: 0.0078 S22: -0.2314 S23: -0.0666 REMARK 3 S31: -0.3555 S32: 0.0611 S33: 0.0729 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 106 REMARK 3 ORIGIN FOR THE GROUP (A): 25.5479 21.4864 34.1875 REMARK 3 T TENSOR REMARK 3 T11: 0.1098 T22: 0.2976 REMARK 3 T33: 0.0882 T12: -0.0331 REMARK 3 T13: -0.0113 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 1.3435 L22: 0.6147 REMARK 3 L33: 5.1749 L12: -0.8005 REMARK 3 L13: 1.1526 L23: 0.0587 REMARK 3 S TENSOR REMARK 3 S11: -0.0801 S12: -0.0021 S13: -0.0418 REMARK 3 S21: 0.0266 S22: 0.1202 S23: 0.0380 REMARK 3 S31: -0.0720 S32: 0.6667 S33: -0.0401 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 107 H 224 REMARK 3 ORIGIN FOR THE GROUP (A): 19.4920 20.3317 68.2636 REMARK 3 T TENSOR REMARK 3 T11: 0.2122 T22: 0.1776 REMARK 3 T33: 0.1329 T12: 0.0466 REMARK 3 T13: 0.0243 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 0.1318 L22: 0.5389 REMARK 3 L33: 4.9281 L12: 0.2055 REMARK 3 L13: -0.2551 L23: -0.0341 REMARK 3 S TENSOR REMARK 3 S11: 0.0054 S12: 0.0525 S13: -0.0286 REMARK 3 S21: 0.1463 S22: -0.0267 S23: -0.0079 REMARK 3 S31: 0.3567 S32: 0.2286 S33: 0.0213 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 217 REMARK 3 ORIGIN FOR THE GROUP (A): 11.7953 23.4187 5.4005 REMARK 3 T TENSOR REMARK 3 T11: 0.1978 T22: 0.0406 REMARK 3 T33: 0.1670 T12: 0.0189 REMARK 3 T13: 0.0200 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 3.5117 L22: 1.3195 REMARK 3 L33: 2.2161 L12: 0.4345 REMARK 3 L13: 0.9915 L23: 0.1118 REMARK 3 S TENSOR REMARK 3 S11: -0.0624 S12: 0.0280 S13: 0.0657 REMARK 3 S21: -0.0302 S22: 0.0084 S23: -0.0044 REMARK 3 S31: -0.0413 S32: 0.2772 S33: 0.0540 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MAC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000058307. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARCCD300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23655 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08200 REMARK 200 FOR THE DATA SET : 13.7900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.52400 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2CMR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% POLYETHYLENE GLYCOL 10K, 0.1M REMARK 280 AMMONIUM SULFATE, 5% ETHYLENE GLYCOL, PH 8.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.87050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 42 REMARK 465 GLY A 43 REMARK 465 SER A 44 REMARK 465 GLY A 45 REMARK 465 GLY A 46 REMARK 465 HIS A 47 REMARK 465 SER A 86 REMARK 465 SER A 87 REMARK 465 GLY A 88 REMARK 465 LEU A 128 REMARK 465 ALA A 129 REMARK 465 GLY A 130 REMARK 465 GLY A 131 REMARK 465 SER A 132 REMARK 465 GLY A 133 REMARK 465 GLY A 134 REMARK 465 HIS A 135 REMARK 465 THR A 136 REMARK 465 GLY A 173 REMARK 465 SER A 174 REMARK 465 SER A 175 REMARK 465 GLY A 176 REMARK 465 ALA A 217 REMARK 465 GLN H 1 REMARK 465 VAL H 2 REMARK 465 LYS H 136 REMARK 465 SER H 137 REMARK 465 THR H 138 REMARK 465 SER H 139 REMARK 465 GLY H 140 REMARK 465 GLU H 225 REMARK 465 GLN H 226 REMARK 465 LYS H 227 REMARK 465 LEU H 228 REMARK 465 ILE H 229 REMARK 465 SER H 230 REMARK 465 GLU H 231 REMARK 465 GLU H 232 REMARK 465 ASP H 233 REMARK 465 LEU H 234 REMARK 465 ASN H 235 REMARK 465 GLY H 236 REMARK 465 ALA H 237 REMARK 465 PRO H 238 REMARK 465 HIS H 239 REMARK 465 HIS H 240 REMARK 465 HIS H 241 REMARK 465 HIS H 242 REMARK 465 HIS H 243 REMARK 465 HIS H 244 REMARK 465 ASP L 1 REMARK 465 GLU L 212 REMARK 465 ALA L 213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 85 CA C O REMARK 470 VAL H 57 CG1 CG2 REMARK 470 GLN H 199 CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR L 94 O HOH L 218 2.17 REMARK 500 OE1 GLU A 169 O HOH A 228 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU H 185 CA - CB - CG ANGL. DEV. = 15.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 125 34.14 -91.11 REMARK 500 ALA A 213 5.41 -67.71 REMARK 500 GLU H 223 45.13 -92.56 REMARK 500 ASP L 25 -74.48 -70.05 REMARK 500 PRO L 39 123.14 -38.76 REMARK 500 THR L 77 130.83 -39.25 REMARK 500 ALA L 83 -177.87 -176.41 REMARK 500 VAL L 95 45.14 38.47 REMARK 500 SER L 154 -8.19 75.68 REMARK 500 GLN L 169 -94.44 -67.48 REMARK 500 SER L 170 -55.89 -154.87 REMARK 500 ASN L 172 36.31 -87.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MA9 RELATED DB: PDB DBREF 3MAC A 1 217 UNP D0VWW0 D0VWW0_9HIV1 1 217 DBREF 3MAC H 1 244 PDB 3MAC 3MAC 1 244 DBREF 3MAC L 1 213 PDB 3MAC 3MAC 1 213 SEQRES 1 A 217 MET GLN LEU LEU SER GLY ILE VAL GLN GLN GLN ASN ASN SEQRES 2 A 217 LEU LEU ARG ALA ILE GLU ALA GLN GLN HIS LEU LEU GLN SEQRES 3 A 217 LEU THR VAL TRP GLY ILE LYS GLN LEU GLN ALA ARG ILE SEQRES 4 A 217 LEU ALA GLY GLY SER GLY GLY HIS THR THR TRP MET GLU SEQRES 5 A 217 TRP ASP ARG GLU ILE ASN ASN TYR THR SER LEU ILE HIS SEQRES 6 A 217 SER LEU ILE GLU GLU SER GLN ASN GLN GLN GLU LYS ASN SEQRES 7 A 217 GLU GLN GLU LEU LEU GLU GLY SER SER GLY GLY GLN LEU SEQRES 8 A 217 LEU SER GLY ILE VAL GLN GLN GLN ASN ASN LEU LEU ARG SEQRES 9 A 217 ALA ILE GLU ALA GLN GLN HIS LEU LEU GLN LEU THR VAL SEQRES 10 A 217 TRP GLY ILE LYS GLN LEU GLN ALA ARG ILE LEU ALA GLY SEQRES 11 A 217 GLY SER GLY GLY HIS THR THR TRP MET GLU TRP ASP ARG SEQRES 12 A 217 GLU ILE ASN ASN TYR THR SER LEU ILE HIS SER LEU ILE SEQRES 13 A 217 GLU GLU SER GLN ASN GLN GLN GLU LYS ASN GLU GLN GLU SEQRES 14 A 217 LEU LEU GLU GLY SER SER GLY GLY GLN LEU LEU SER GLY SEQRES 15 A 217 ILE VAL GLN GLN GLN ASN ASN LEU LEU ARG ALA ILE GLU SEQRES 16 A 217 ALA GLN GLN HIS LEU LEU GLN LEU THR VAL TRP GLY ILE SEQRES 17 A 217 LYS GLN LEU GLN ALA ARG ILE LEU ALA SEQRES 1 H 245 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 245 PRO GLY SER SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 245 GLY THR PHE ASN SER TYR ALA PHE SER TRP VAL ARG GLN SEQRES 4 H 245 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY SER ILE ILE SEQRES 5 H 245 PRO LEU PHE GLY PHE VAL VAL TYR ALA GLN LYS PHE GLN SEQRES 6 H 245 GLY ARG VAL THR ILE THR ALA ASP GLU SER THR SER THR SEQRES 7 H 245 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 245 ALA VAL TYR TYR CYS ALA ARG TYR PHE ASP THR TYR ASN SEQRES 9 H 245 ASN TYR GLY PHE ALA ASN TRP GLY GLN GLY THR LEU VAL SEQRES 10 H 245 THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 H 245 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 H 245 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 H 245 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 H 245 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 H 245 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 H 245 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 H 245 LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO SEQRES 18 H 245 LYS SER GLU PHE GLU GLN LYS LEU ILE SER GLU GLU ASP SEQRES 19 H 245 LEU ASN GLY ALA PRO HIS HIS HIS HIS HIS HIS SEQRES 1 L 213 ASP ILE GLU LEU THR GLN PRO PRO SER VAL SER VAL VAL SEQRES 2 L 213 PRO GLY GLN THR ALA ARG ILE SER CYS SER GLY ASP ASN SEQRES 3 L 213 ILE PRO TYR GLU TYR ALA SER TRP TYR GLN GLN LYS PRO SEQRES 4 L 213 GLY GLN ALA PRO VAL LEU VAL ILE TYR GLY ASP ASN ASN SEQRES 5 L 213 ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY SER ASN SEQRES 6 L 213 SER GLY ASN THR ALA THR LEU THR ILE SER GLY THR GLN SEQRES 7 L 213 ALA GLU ASP GLU ALA ASP TYR TYR CYS ALA SER TRP ASP SEQRES 8 L 213 SER MET THR VAL ASP GLY VAL PHE GLY GLY GLY THR LYS SEQRES 9 L 213 LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SER VAL SEQRES 10 L 213 THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA ASN SEQRES 11 L 213 LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR PRO SEQRES 12 L 213 GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER PRO SEQRES 13 L 213 VAL LYS ALA GLY VAL GLU THR THR THR PRO SER LYS GLN SEQRES 14 L 213 SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER LEU SEQRES 15 L 213 THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER CYS SEQRES 16 L 213 GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS THR VAL SEQRES 17 L 213 ALA PRO THR GLU ALA FORMUL 4 HOH *69(H2 O) HELIX 1 1 MET A 1 LEU A 40 1 40 HELIX 2 2 THR A 48 GLU A 84 1 37 HELIX 3 3 GLY A 89 ALA A 125 1 37 HELIX 4 4 THR A 137 GLU A 172 1 36 HELIX 5 5 GLY A 177 ALA A 213 1 37 HELIX 6 6 THR H 28 TYR H 32 5 5 HELIX 7 7 GLN H 61 GLN H 64 5 4 HELIX 8 8 ARG H 86 THR H 90 5 5 HELIX 9 9 SER H 194 LEU H 196 5 3 HELIX 10 10 LYS H 208 ASN H 211 5 4 HELIX 11 11 GLN L 78 GLU L 82 5 5 HELIX 12 12 SER L 123 ALA L 129 1 7 HELIX 13 13 THR L 183 SER L 189 1 7 SHEET 1 A 4 LEU H 4 GLN H 6 0 SHEET 2 A 4 VAL H 18 ALA H 24 -1 O LYS H 23 N VAL H 5 SHEET 3 A 4 THR H 77 LEU H 82 -1 O MET H 80 N VAL H 20 SHEET 4 A 4 VAL H 67 ASP H 72 -1 N THR H 70 O TYR H 79 SHEET 1 B 6 GLU H 10 LYS H 12 0 SHEET 2 B 6 THR H 114 VAL H 118 1 O THR H 117 N LYS H 12 SHEET 3 B 6 ALA H 91 TYR H 98 -1 N ALA H 91 O VAL H 116 SHEET 4 B 6 ALA H 33 GLN H 39 -1 N VAL H 37 O TYR H 94 SHEET 5 B 6 LEU H 45 ILE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 B 6 VAL H 57 TYR H 59 -1 O VAL H 58 N SER H 50 SHEET 1 C 4 GLU H 10 LYS H 12 0 SHEET 2 C 4 THR H 114 VAL H 118 1 O THR H 117 N LYS H 12 SHEET 3 C 4 ALA H 91 TYR H 98 -1 N ALA H 91 O VAL H 116 SHEET 4 C 4 ASN H 109 TRP H 110 -1 O ASN H 109 N ARG H 97 SHEET 1 D 4 SER H 127 LEU H 131 0 SHEET 2 D 4 THR H 142 TYR H 152 -1 O LEU H 148 N PHE H 129 SHEET 3 D 4 TYR H 183 PRO H 192 -1 O LEU H 185 N VAL H 149 SHEET 4 D 4 VAL H 170 THR H 172 -1 N HIS H 171 O VAL H 188 SHEET 1 E 4 SER H 127 LEU H 131 0 SHEET 2 E 4 THR H 142 TYR H 152 -1 O LEU H 148 N PHE H 129 SHEET 3 E 4 TYR H 183 PRO H 192 -1 O LEU H 185 N VAL H 149 SHEET 4 E 4 VAL H 176 LEU H 177 -1 N VAL H 176 O SER H 184 SHEET 1 F 3 THR H 158 TRP H 161 0 SHEET 2 F 3 ILE H 202 HIS H 207 -1 O ASN H 206 N THR H 158 SHEET 3 F 3 THR H 212 LYS H 217 -1 O VAL H 214 N VAL H 205 SHEET 1 G 5 SER L 9 VAL L 12 0 SHEET 2 G 5 THR L 103 VAL L 107 1 O THR L 106 N VAL L 10 SHEET 3 G 5 ALA L 83 TRP L 90 -1 N ALA L 83 O LEU L 105 SHEET 4 G 5 SER L 33 GLN L 37 -1 N GLN L 37 O ASP L 84 SHEET 5 G 5 VAL L 44 ILE L 47 -1 O VAL L 46 N TRP L 34 SHEET 1 H 4 SER L 9 VAL L 12 0 SHEET 2 H 4 THR L 103 VAL L 107 1 O THR L 106 N VAL L 10 SHEET 3 H 4 ALA L 83 TRP L 90 -1 N ALA L 83 O LEU L 105 SHEET 4 H 4 GLY L 97 PHE L 99 -1 O VAL L 98 N SER L 89 SHEET 1 I 3 ALA L 18 SER L 23 0 SHEET 2 I 3 THR L 69 ILE L 74 -1 O LEU L 72 N ILE L 20 SHEET 3 I 3 PHE L 61 ASN L 65 -1 N SER L 62 O THR L 73 SHEET 1 J 4 SER L 116 PHE L 120 0 SHEET 2 J 4 ALA L 132 PHE L 141 -1 O SER L 139 N SER L 116 SHEET 3 J 4 TYR L 174 LEU L 182 -1 O LEU L 182 N ALA L 132 SHEET 4 J 4 VAL L 161 THR L 163 -1 N GLU L 162 O TYR L 179 SHEET 1 K 4 SER L 116 PHE L 120 0 SHEET 2 K 4 ALA L 132 PHE L 141 -1 O SER L 139 N SER L 116 SHEET 3 K 4 TYR L 174 LEU L 182 -1 O LEU L 182 N ALA L 132 SHEET 4 K 4 SER L 167 LYS L 168 -1 N SER L 167 O ALA L 175 SHEET 1 L 4 SER L 155 PRO L 156 0 SHEET 2 L 4 THR L 147 ALA L 152 -1 N ALA L 152 O SER L 155 SHEET 3 L 4 TYR L 193 HIS L 199 -1 O THR L 198 N THR L 147 SHEET 4 L 4 SER L 202 VAL L 208 -1 O VAL L 204 N VAL L 197 SSBOND 1 CYS H 22 CYS H 95 1555 1555 2.06 SSBOND 2 CYS H 147 CYS H 203 1555 1555 2.05 SSBOND 3 CYS L 22 CYS L 87 1555 1555 2.06 SSBOND 4 CYS L 136 CYS L 195 1555 1555 2.04 CISPEP 1 PHE H 153 PRO H 154 0 -12.98 CISPEP 2 GLU H 155 PRO H 156 0 -0.65 CISPEP 3 TYR L 142 PRO L 143 0 -4.38 CRYST1 83.668 41.741 98.602 90.00 94.85 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011952 0.000000 0.001014 0.00000 SCALE2 0.000000 0.023957 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010178 0.00000