data_3MAH # _entry.id 3MAH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3MAH RCSB RCSB058311 WWPDB D_1000058311 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id apc90238.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3MAH _pdbx_database_status.recvd_initial_deposition_date 2010-03-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Filippova, E.V.' 1 'Minasov, G.' 2 'Shuvalova, L.' 3 'Kiryukhina, O.' 4 'Moy, S.' 5 'Joachimiak, A.' 6 'Anderson, F.W.' 7 'Midwest Center for Structural Genomics (MCSG)' 8 # _citation.id primary _citation.title 'A Putative C-Terminal Regulatory Domain of Aspartate Kinase from Porphyromonas Gingivalis W83.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Filippova, E.V.' 1 primary 'Minasov, G.' 2 primary 'Shuvalova, L.' 3 primary 'Kiryukhina, O.' 4 primary 'Moy, S.' 5 primary 'Joachimiak, A.' 6 primary 'Anderson, W.F.' 7 # _cell.entry_id 3MAH _cell.length_a 46.670 _cell.length_b 46.670 _cell.length_c 221.902 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3MAH _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Aspartokinase 17628.645 1 2.7.2.4 ? 'C-terminal domain' ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 water nat water 18.015 42 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SLDTEKDCIKAVAAKDGITVIKVKSSNKLLSWHF(MSE)RKLFEIFEFYQEPVD(MSE)VATSEVGVSLTIDNDKNLPDI VRALSDIGDVTVDKD(MSE)VIICIVGD(MSE)EWDNVGFEARIINALKGVPVR(MSE)ISYGGSNYNVSVLVKAEDKKK ALIALSNKLFNSRATKA ; _entity_poly.pdbx_seq_one_letter_code_can ;SLDTEKDCIKAVAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVATSEVGVSLTIDNDKNLPDIVRALSDIG DVTVDKDMVIICIVGDMEWDNVGFEARIINALKGVPVRMISYGGSNYNVSVLVKAEDKKKALIALSNKLFNSRATKA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier apc90238.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 LEU n 1 3 ASP n 1 4 THR n 1 5 GLU n 1 6 LYS n 1 7 ASP n 1 8 CYS n 1 9 ILE n 1 10 LYS n 1 11 ALA n 1 12 VAL n 1 13 ALA n 1 14 ALA n 1 15 LYS n 1 16 ASP n 1 17 GLY n 1 18 ILE n 1 19 THR n 1 20 VAL n 1 21 ILE n 1 22 LYS n 1 23 VAL n 1 24 LYS n 1 25 SER n 1 26 SER n 1 27 ASN n 1 28 LYS n 1 29 LEU n 1 30 LEU n 1 31 SER n 1 32 TRP n 1 33 HIS n 1 34 PHE n 1 35 MSE n 1 36 ARG n 1 37 LYS n 1 38 LEU n 1 39 PHE n 1 40 GLU n 1 41 ILE n 1 42 PHE n 1 43 GLU n 1 44 PHE n 1 45 TYR n 1 46 GLN n 1 47 GLU n 1 48 PRO n 1 49 VAL n 1 50 ASP n 1 51 MSE n 1 52 VAL n 1 53 ALA n 1 54 THR n 1 55 SER n 1 56 GLU n 1 57 VAL n 1 58 GLY n 1 59 VAL n 1 60 SER n 1 61 LEU n 1 62 THR n 1 63 ILE n 1 64 ASP n 1 65 ASN n 1 66 ASP n 1 67 LYS n 1 68 ASN n 1 69 LEU n 1 70 PRO n 1 71 ASP n 1 72 ILE n 1 73 VAL n 1 74 ARG n 1 75 ALA n 1 76 LEU n 1 77 SER n 1 78 ASP n 1 79 ILE n 1 80 GLY n 1 81 ASP n 1 82 VAL n 1 83 THR n 1 84 VAL n 1 85 ASP n 1 86 LYS n 1 87 ASP n 1 88 MSE n 1 89 VAL n 1 90 ILE n 1 91 ILE n 1 92 CYS n 1 93 ILE n 1 94 VAL n 1 95 GLY n 1 96 ASP n 1 97 MSE n 1 98 GLU n 1 99 TRP n 1 100 ASP n 1 101 ASN n 1 102 VAL n 1 103 GLY n 1 104 PHE n 1 105 GLU n 1 106 ALA n 1 107 ARG n 1 108 ILE n 1 109 ILE n 1 110 ASN n 1 111 ALA n 1 112 LEU n 1 113 LYS n 1 114 GLY n 1 115 VAL n 1 116 PRO n 1 117 VAL n 1 118 ARG n 1 119 MSE n 1 120 ILE n 1 121 SER n 1 122 TYR n 1 123 GLY n 1 124 GLY n 1 125 SER n 1 126 ASN n 1 127 TYR n 1 128 ASN n 1 129 VAL n 1 130 SER n 1 131 VAL n 1 132 LEU n 1 133 VAL n 1 134 LYS n 1 135 ALA n 1 136 GLU n 1 137 ASP n 1 138 LYS n 1 139 LYS n 1 140 LYS n 1 141 ALA n 1 142 LEU n 1 143 ILE n 1 144 ALA n 1 145 LEU n 1 146 SER n 1 147 ASN n 1 148 LYS n 1 149 LEU n 1 150 PHE n 1 151 ASN n 1 152 SER n 1 153 ARG n 1 154 ALA n 1 155 THR n 1 156 LYS n 1 157 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Bacteroides gingivalis' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'lysC, PG2189, PG_2189' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain W83 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Porphyromonas gingivalis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 242619 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21magic _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q7MT13_PORGI _struct_ref.pdbx_db_accession Q7MT13 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SLDTEKDCIKAVAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVATSEVGVSLTIDNDKNLPDIVRALSDIG DVTVDKDMVIICIVGDMEWDNVGFEARIINALKGVPVRMISYGGSNYNVSVLVKAEDKKKALIALSNKLFNSRATKA ; _struct_ref.pdbx_align_begin 290 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3MAH _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 157 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q7MT13 _struct_ref_seq.db_align_beg 290 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 446 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 290 _struct_ref_seq.pdbx_auth_seq_align_end 446 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3MAH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.98 _exptl_crystal.density_percent_sol 37.84 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details '0.1 M Tris, 1.6 M Ammonium Sulfate, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 294K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2010-03-04 _diffrn_detector.details MIRROR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator DIAMOND _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97872 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-F' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-F _diffrn_source.pdbx_wavelength 0.97872 _diffrn_source.pdbx_wavelength_list 0.97872 # _reflns.entry_id 3MAH _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.420 _reflns.d_resolution_high 2.300 _reflns.number_obs 6972 _reflns.number_all 6972 _reflns.percent_possible_obs 98.7 _reflns.pdbx_Rmerge_I_obs 0.08400 _reflns.pdbx_Rsym_value 0.08400 _reflns.pdbx_netI_over_sigmaI 63.1410 _reflns.B_iso_Wilson_estimate 52.8 _reflns.pdbx_redundancy 15.200 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.34 _reflns_shell.percent_possible_all 98.4 _reflns_shell.Rmerge_I_obs 0.19400 _reflns_shell.pdbx_Rsym_value 0.19400 _reflns_shell.meanI_over_sigI_obs 18.400 _reflns_shell.pdbx_redundancy 16.20 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3MAH _refine.ls_number_reflns_obs 6863 _refine.ls_number_reflns_all 7187 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.42 _refine.ls_d_res_high 2.31 _refine.ls_percent_reflns_obs 98.240 _refine.ls_R_factor_obs 0.213 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.211 _refine.ls_R_factor_R_free 0.240 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.700 _refine.ls_number_reflns_R_free 324 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.944 _refine.correlation_coeff_Fo_to_Fc_free 0.934 _refine.B_iso_mean 35.48 _refine.aniso_B[1][1] 2.10000 _refine.aniso_B[2][2] 2.10000 _refine.aniso_B[3][3] -3.15000 _refine.aniso_B[1][2] 1.05000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.375 _refine.pdbx_overall_ESU_R_Free 0.236 _refine.overall_SU_ML 0.167 _refine.overall_SU_B 15.643 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3MAH _refine_analyze.Luzzati_coordinate_error_obs 0.3 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1072 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 42 _refine_hist.number_atoms_total 1119 _refine_hist.d_res_high 2.31 _refine_hist.d_res_low 40.42 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.018 0.022 ? 1105 'X-RAY DIFFRACTION' ? r_bond_other_d 0.003 0.020 ? 739 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.721 1.975 ? 1493 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.954 3.000 ? 1827 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.142 5.000 ? 141 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.599 25.476 ? 42 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.031 15.000 ? 210 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.945 15.000 ? 4 'X-RAY DIFFRACTION' ? r_chiral_restr 0.108 0.200 ? 180 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1200 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 203 'X-RAY DIFFRACTION' ? r_mcbond_it 0.837 1.500 ? 700 'X-RAY DIFFRACTION' ? r_mcbond_other 0.208 1.500 ? 286 'X-RAY DIFFRACTION' ? r_mcangle_it 1.581 2.000 ? 1139 'X-RAY DIFFRACTION' ? r_scbond_it 2.811 3.000 ? 405 'X-RAY DIFFRACTION' ? r_scangle_it 4.065 4.500 ? 354 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.31 _refine_ls_shell.d_res_low 2.37 _refine_ls_shell.number_reflns_R_work 452 _refine_ls_shell.R_factor_R_work 0.2400 _refine_ls_shell.percent_reflns_obs 98.37 _refine_ls_shell.R_factor_R_free 0.3530 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 30 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3MAH _struct.title 'A putative c-terminal regulatory domain of aspartate kinase from porphyromonas gingivalis w83.' _struct.pdbx_descriptor 'Aspartokinase (E.C.2.7.2.4)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3MAH _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;ASPARTATE KINASE, STRUCTURAL GENOMICS, MCSG, TRANSFERASE, PORPHYROMONAS GINGIVALIS, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 30 ? TYR A 45 ? LEU A 319 TYR A 334 1 ? 16 HELX_P HELX_P2 2 ASN A 68 ? SER A 77 ? ASN A 357 SER A 366 1 ? 10 HELX_P HELX_P3 3 GLY A 103 ? ALA A 111 ? GLY A 392 ALA A 400 1 ? 9 HELX_P HELX_P4 4 ASP A 137 ? ASN A 151 ? ASP A 426 ASN A 440 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A PHE 34 C ? ? ? 1_555 A MSE 35 N ? ? A PHE 323 A MSE 324 1_555 ? ? ? ? ? ? ? 1.326 ? covale2 covale ? ? A MSE 35 C ? ? ? 1_555 A ARG 36 N ? ? A MSE 324 A ARG 325 1_555 ? ? ? ? ? ? ? 1.327 ? covale3 covale ? ? A ASP 50 C ? ? ? 1_555 A MSE 51 N ? ? A ASP 339 A MSE 340 1_555 ? ? ? ? ? ? ? 1.325 ? covale4 covale ? ? A MSE 51 C ? ? ? 1_555 A VAL 52 N ? ? A MSE 340 A VAL 341 1_555 ? ? ? ? ? ? ? 1.338 ? covale5 covale ? ? A ASP 87 C ? ? ? 1_555 A MSE 88 N ? ? A ASP 376 A MSE 377 1_555 ? ? ? ? ? ? ? 1.329 ? covale6 covale ? ? A MSE 88 C ? ? ? 1_555 A VAL 89 N ? ? A MSE 377 A VAL 378 1_555 ? ? ? ? ? ? ? 1.329 ? covale7 covale ? ? A ARG 118 C ? ? ? 1_555 A MSE 119 N ? ? A ARG 407 A MSE 408 1_555 ? ? ? ? ? ? ? 1.331 ? covale8 covale ? ? A MSE 119 C ? ? ? 1_555 A ILE 120 N ? ? A MSE 408 A ILE 409 1_555 ? ? ? ? ? ? ? 1.328 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 52 ? ALA A 53 ? VAL A 341 ALA A 342 A 2 GLY A 58 ? ILE A 63 ? GLY A 347 ILE A 352 A 3 ALA A 11 ? SER A 25 ? ALA A 300 SER A 314 A 4 GLY A 80 ? VAL A 94 ? GLY A 369 VAL A 383 A 5 VAL A 129 ? LYS A 134 ? VAL A 418 LYS A 423 A 6 MSE A 119 ? TYR A 122 ? MSE A 408 TYR A 411 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 53 ? N ALA A 342 O SER A 60 ? O SER A 349 A 2 3 O LEU A 61 ? O LEU A 350 N ILE A 21 ? N ILE A 310 A 3 4 N VAL A 20 ? N VAL A 309 O ASP A 85 ? O ASP A 374 A 4 5 N ILE A 91 ? N ILE A 380 O VAL A 131 ? O VAL A 420 A 5 6 O SER A 130 ? O SER A 419 N SER A 121 ? N SER A 410 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ARG A 36 ? ARG A 325 . ? 8_455 ? 2 AC1 5 LYS A 37 ? LYS A 326 . ? 8_455 ? 3 AC1 5 ARG A 107 ? ARG A 396 . ? 1_555 ? 4 AC1 5 LYS A 113 ? LYS A 402 . ? 8_555 ? 5 AC1 5 LYS A 148 ? LYS A 437 . ? 1_555 ? # _database_PDB_matrix.entry_id 3MAH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3MAH _atom_sites.fract_transf_matrix[1][1] 0.021430 _atom_sites.fract_transf_matrix[1][2] 0.012370 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024740 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004510 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 290 ? ? ? A . n A 1 2 LEU 2 291 ? ? ? A . n A 1 3 ASP 3 292 ? ? ? A . n A 1 4 THR 4 293 ? ? ? A . n A 1 5 GLU 5 294 ? ? ? A . n A 1 6 LYS 6 295 ? ? ? A . n A 1 7 ASP 7 296 296 ASP ASP A . n A 1 8 CYS 8 297 297 CYS CYS A . n A 1 9 ILE 9 298 298 ILE ILE A . n A 1 10 LYS 10 299 299 LYS LYS A . n A 1 11 ALA 11 300 300 ALA ALA A . n A 1 12 VAL 12 301 301 VAL VAL A . n A 1 13 ALA 13 302 302 ALA ALA A . n A 1 14 ALA 14 303 303 ALA ALA A . n A 1 15 LYS 15 304 304 LYS LYS A . n A 1 16 ASP 16 305 305 ASP ASP A . n A 1 17 GLY 17 306 306 GLY GLY A . n A 1 18 ILE 18 307 307 ILE ILE A . n A 1 19 THR 19 308 308 THR THR A . n A 1 20 VAL 20 309 309 VAL VAL A . n A 1 21 ILE 21 310 310 ILE ILE A . n A 1 22 LYS 22 311 311 LYS LYS A . n A 1 23 VAL 23 312 312 VAL VAL A . n A 1 24 LYS 24 313 313 LYS LYS A . n A 1 25 SER 25 314 314 SER SER A . n A 1 26 SER 26 315 315 SER SER A . n A 1 27 ASN 27 316 316 ASN ASN A . n A 1 28 LYS 28 317 317 LYS LYS A . n A 1 29 LEU 29 318 318 LEU LEU A . n A 1 30 LEU 30 319 319 LEU LEU A . n A 1 31 SER 31 320 320 SER SER A . n A 1 32 TRP 32 321 321 TRP TRP A . n A 1 33 HIS 33 322 322 HIS HIS A . n A 1 34 PHE 34 323 323 PHE PHE A . n A 1 35 MSE 35 324 324 MSE MSE A . n A 1 36 ARG 36 325 325 ARG ARG A . n A 1 37 LYS 37 326 326 LYS LYS A . n A 1 38 LEU 38 327 327 LEU LEU A . n A 1 39 PHE 39 328 328 PHE PHE A . n A 1 40 GLU 40 329 329 GLU GLU A . n A 1 41 ILE 41 330 330 ILE ILE A . n A 1 42 PHE 42 331 331 PHE PHE A . n A 1 43 GLU 43 332 332 GLU GLU A . n A 1 44 PHE 44 333 333 PHE PHE A . n A 1 45 TYR 45 334 334 TYR TYR A . n A 1 46 GLN 46 335 335 GLN GLN A . n A 1 47 GLU 47 336 336 GLU GLU A . n A 1 48 PRO 48 337 337 PRO PRO A . n A 1 49 VAL 49 338 338 VAL VAL A . n A 1 50 ASP 50 339 339 ASP ASP A . n A 1 51 MSE 51 340 340 MSE MSE A . n A 1 52 VAL 52 341 341 VAL VAL A . n A 1 53 ALA 53 342 342 ALA ALA A . n A 1 54 THR 54 343 343 THR THR A . n A 1 55 SER 55 344 344 SER SER A . n A 1 56 GLU 56 345 345 GLU GLU A . n A 1 57 VAL 57 346 346 VAL VAL A . n A 1 58 GLY 58 347 347 GLY GLY A . n A 1 59 VAL 59 348 348 VAL VAL A . n A 1 60 SER 60 349 349 SER SER A . n A 1 61 LEU 61 350 350 LEU LEU A . n A 1 62 THR 62 351 351 THR THR A . n A 1 63 ILE 63 352 352 ILE ILE A . n A 1 64 ASP 64 353 353 ASP ASP A . n A 1 65 ASN 65 354 354 ASN ASN A . n A 1 66 ASP 66 355 355 ASP ASP A . n A 1 67 LYS 67 356 356 LYS LYS A . n A 1 68 ASN 68 357 357 ASN ASN A . n A 1 69 LEU 69 358 358 LEU LEU A . n A 1 70 PRO 70 359 359 PRO PRO A . n A 1 71 ASP 71 360 360 ASP ASP A . n A 1 72 ILE 72 361 361 ILE ILE A . n A 1 73 VAL 73 362 362 VAL VAL A . n A 1 74 ARG 74 363 363 ARG ARG A . n A 1 75 ALA 75 364 364 ALA ALA A . n A 1 76 LEU 76 365 365 LEU LEU A . n A 1 77 SER 77 366 366 SER SER A . n A 1 78 ASP 78 367 367 ASP ASP A . n A 1 79 ILE 79 368 368 ILE ILE A . n A 1 80 GLY 80 369 369 GLY GLY A . n A 1 81 ASP 81 370 370 ASP ASP A . n A 1 82 VAL 82 371 371 VAL VAL A . n A 1 83 THR 83 372 372 THR THR A . n A 1 84 VAL 84 373 373 VAL VAL A . n A 1 85 ASP 85 374 374 ASP ASP A . n A 1 86 LYS 86 375 375 LYS LYS A . n A 1 87 ASP 87 376 376 ASP ASP A . n A 1 88 MSE 88 377 377 MSE MSE A . n A 1 89 VAL 89 378 378 VAL VAL A . n A 1 90 ILE 90 379 379 ILE ILE A . n A 1 91 ILE 91 380 380 ILE ILE A . n A 1 92 CYS 92 381 381 CYS CYS A . n A 1 93 ILE 93 382 382 ILE ILE A . n A 1 94 VAL 94 383 383 VAL VAL A . n A 1 95 GLY 95 384 384 GLY GLY A . n A 1 96 ASP 96 385 ? ? ? A . n A 1 97 MSE 97 386 ? ? ? A . n A 1 98 GLU 98 387 ? ? ? A . n A 1 99 TRP 99 388 ? ? ? A . n A 1 100 ASP 100 389 ? ? ? A . n A 1 101 ASN 101 390 ? ? ? A . n A 1 102 VAL 102 391 391 VAL VAL A . n A 1 103 GLY 103 392 392 GLY GLY A . n A 1 104 PHE 104 393 393 PHE PHE A . n A 1 105 GLU 105 394 394 GLU GLU A . n A 1 106 ALA 106 395 395 ALA ALA A . n A 1 107 ARG 107 396 396 ARG ARG A . n A 1 108 ILE 108 397 397 ILE ILE A . n A 1 109 ILE 109 398 398 ILE ILE A . n A 1 110 ASN 110 399 399 ASN ASN A . n A 1 111 ALA 111 400 400 ALA ALA A . n A 1 112 LEU 112 401 401 LEU LEU A . n A 1 113 LYS 113 402 402 LYS LYS A . n A 1 114 GLY 114 403 403 GLY GLY A . n A 1 115 VAL 115 404 404 VAL VAL A . n A 1 116 PRO 116 405 405 PRO PRO A . n A 1 117 VAL 117 406 406 VAL VAL A . n A 1 118 ARG 118 407 407 ARG ARG A . n A 1 119 MSE 119 408 408 MSE MSE A . n A 1 120 ILE 120 409 409 ILE ILE A . n A 1 121 SER 121 410 410 SER SER A . n A 1 122 TYR 122 411 411 TYR TYR A . n A 1 123 GLY 123 412 412 GLY GLY A . n A 1 124 GLY 124 413 413 GLY GLY A . n A 1 125 SER 125 414 414 SER SER A . n A 1 126 ASN 126 415 415 ASN ASN A . n A 1 127 TYR 127 416 416 TYR TYR A . n A 1 128 ASN 128 417 417 ASN ASN A . n A 1 129 VAL 129 418 418 VAL VAL A . n A 1 130 SER 130 419 419 SER SER A . n A 1 131 VAL 131 420 420 VAL VAL A . n A 1 132 LEU 132 421 421 LEU LEU A . n A 1 133 VAL 133 422 422 VAL VAL A . n A 1 134 LYS 134 423 423 LYS LYS A . n A 1 135 ALA 135 424 424 ALA ALA A . n A 1 136 GLU 136 425 425 GLU GLU A . n A 1 137 ASP 137 426 426 ASP ASP A . n A 1 138 LYS 138 427 427 LYS LYS A . n A 1 139 LYS 139 428 428 LYS LYS A . n A 1 140 LYS 140 429 429 LYS LYS A . n A 1 141 ALA 141 430 430 ALA ALA A . n A 1 142 LEU 142 431 431 LEU LEU A . n A 1 143 ILE 143 432 432 ILE ILE A . n A 1 144 ALA 144 433 433 ALA ALA A . n A 1 145 LEU 145 434 434 LEU LEU A . n A 1 146 SER 146 435 435 SER SER A . n A 1 147 ASN 147 436 436 ASN ASN A . n A 1 148 LYS 148 437 437 LYS LYS A . n A 1 149 LEU 149 438 438 LEU LEU A . n A 1 150 PHE 150 439 439 PHE PHE A . n A 1 151 ASN 151 440 440 ASN ASN A . n A 1 152 SER 152 441 ? ? ? A . n A 1 153 ARG 153 442 ? ? ? A . n A 1 154 ALA 154 443 ? ? ? A . n A 1 155 THR 155 444 ? ? ? A . n A 1 156 LYS 156 445 ? ? ? A . n A 1 157 ALA 157 446 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 1 1 SO4 SO4 A . C 3 HOH 1 2 2 HOH HOH A . C 3 HOH 2 3 3 HOH HOH A . C 3 HOH 3 4 4 HOH HOH A . C 3 HOH 4 5 5 HOH HOH A . C 3 HOH 5 6 6 HOH HOH A . C 3 HOH 6 7 7 HOH HOH A . C 3 HOH 7 8 8 HOH HOH A . C 3 HOH 8 9 9 HOH HOH A . C 3 HOH 9 10 10 HOH HOH A . C 3 HOH 10 11 11 HOH HOH A . C 3 HOH 11 12 12 HOH HOH A . C 3 HOH 12 13 13 HOH HOH A . C 3 HOH 13 14 14 HOH HOH A . C 3 HOH 14 15 15 HOH HOH A . C 3 HOH 15 16 16 HOH HOH A . C 3 HOH 16 17 17 HOH HOH A . C 3 HOH 17 18 18 HOH HOH A . C 3 HOH 18 19 19 HOH HOH A . C 3 HOH 19 20 20 HOH HOH A . C 3 HOH 20 21 21 HOH HOH A . C 3 HOH 21 22 22 HOH HOH A . C 3 HOH 22 23 23 HOH HOH A . C 3 HOH 23 24 24 HOH HOH A . C 3 HOH 24 25 25 HOH HOH A . C 3 HOH 25 26 26 HOH HOH A . C 3 HOH 26 27 27 HOH HOH A . C 3 HOH 27 28 28 HOH HOH A . C 3 HOH 28 29 29 HOH HOH A . C 3 HOH 29 30 30 HOH HOH A . C 3 HOH 30 31 31 HOH HOH A . C 3 HOH 31 32 32 HOH HOH A . C 3 HOH 32 33 33 HOH HOH A . C 3 HOH 33 34 34 HOH HOH A . C 3 HOH 34 35 35 HOH HOH A . C 3 HOH 35 36 36 HOH HOH A . C 3 HOH 36 37 37 HOH HOH A . C 3 HOH 37 38 38 HOH HOH A . C 3 HOH 38 39 39 HOH HOH A . C 3 HOH 39 40 40 HOH HOH A . C 3 HOH 40 41 41 HOH HOH A . C 3 HOH 41 42 42 HOH HOH A . C 3 HOH 42 447 1 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 35 A MSE 324 ? MET SELENOMETHIONINE 2 A MSE 51 A MSE 340 ? MET SELENOMETHIONINE 3 A MSE 88 A MSE 377 ? MET SELENOMETHIONINE 4 A MSE 119 A MSE 408 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3880 ? 1 MORE -32 ? 1 'SSA (A^2)' 13700 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-04-14 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_software.name' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 8.4145 -3.6434 16.0643 0.2220 0.1706 0.0551 -0.0011 0.0108 -0.0080 14.5959 31.0782 6.1601 18.9126 -0.9675 -0.6599 0.0175 0.0935 -0.1110 -0.3132 -0.5396 -0.3750 0.4844 0.5225 0.2421 'X-RAY DIFFRACTION' 2 ? refined 26.4720 8.9609 1.8970 0.1920 0.1550 0.1009 -0.0909 0.0583 0.0101 3.5407 3.2223 4.5558 -0.0471 -0.9578 1.3250 0.3204 -0.0869 -0.2335 0.1379 0.3314 -0.2886 -0.1924 -0.7324 0.5581 'X-RAY DIFFRACTION' 3 ? refined 4.5977 1.8627 8.3374 0.1200 0.0436 0.0794 0.0073 -0.0218 0.0105 4.5028 2.4741 6.1767 1.2023 -0.6859 -0.6042 0.1079 0.0109 -0.1188 -0.0585 0.0082 0.3408 -0.0873 0.0816 -0.3325 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 296 A 306 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 307 A 375 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 376 A 440 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' Max ? 1 HKL-3000 phasing . ? 2 MLPHARE phasing . ? 3 DM 'model building' . ? 4 SHELXD phasing . ? 5 RESOLVE 'model building' . ? 6 ARP 'model building' WARP ? 7 Coot 'model building' . ? 8 CCP4 'model building' . ? 9 REFMAC refinement 5.5.0109 ? 10 HKL-2000 'data reduction' . ? 11 HKL-2000 'data scaling' . ? 12 DM phasing . ? 13 RESOLVE phasing . ? 14 CCP4 phasing . ? 15 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 297 ? ? -101.15 60.44 2 1 SER A 414 ? ? -153.46 -12.17 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 290 ? A SER 1 2 1 Y 1 A LEU 291 ? A LEU 2 3 1 Y 1 A ASP 292 ? A ASP 3 4 1 Y 1 A THR 293 ? A THR 4 5 1 Y 1 A GLU 294 ? A GLU 5 6 1 Y 1 A LYS 295 ? A LYS 6 7 1 Y 1 A ASP 385 ? A ASP 96 8 1 Y 1 A MSE 386 ? A MSE 97 9 1 Y 1 A GLU 387 ? A GLU 98 10 1 Y 1 A TRP 388 ? A TRP 99 11 1 Y 1 A ASP 389 ? A ASP 100 12 1 Y 1 A ASN 390 ? A ASN 101 13 1 Y 1 A SER 441 ? A SER 152 14 1 Y 1 A ARG 442 ? A ARG 153 15 1 Y 1 A ALA 443 ? A ALA 154 16 1 Y 1 A THR 444 ? A THR 155 17 1 Y 1 A LYS 445 ? A LYS 156 18 1 Y 1 A ALA 446 ? A ALA 157 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #