HEADER DNA BINDING PROTEIN 23-MAR-10 3MAJ TITLE CRYSTAL STRUCTURE OF PUTATIVE DNA PROCESSING PROTEIN DPRA FROM TITLE 2 RHODOPSEUDOMONAS PALUSTRIS CGA009 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA PROCESSING CHAIN A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS; SOURCE 3 ORGANISM_TAXID: 1076; SOURCE 4 GENE: DPRA, RPA3120; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)GOLD; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET DERIVATIVE KEYWDS MCSG, PSI-2, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS, DNA PROCESSING PROTEIN DPRA, KEYWDS 3 DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,X.XU,H.CUI,S.CHIN,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 08-NOV-17 3MAJ 1 REMARK REVDAT 2 13-JUL-11 3MAJ 1 VERSN REVDAT 1 12-MAY-10 3MAJ 0 JRNL AUTH C.CHANG,X.XU,H.CUI,S.CHIN,A.SAVCHENKO,A.EDWARDS, JRNL AUTH 2 A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE DNA PROCESSING PROTEIN DPRA JRNL TITL 2 FROM RHODOPSEUDOMONAS PALUSTRIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 22903 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1183 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.11 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1543 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2569 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 143 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 35.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.43000 REMARK 3 B22 (A**2) : 0.20000 REMARK 3 B33 (A**2) : 0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.197 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.174 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.247 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2656 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3608 ; 1.301 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 359 ; 5.023 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;28.572 ;21.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 425 ;15.305 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;17.261 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 421 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2019 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1766 ; 0.667 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2805 ; 1.250 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 890 ; 2.327 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 803 ; 3.952 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): 88.8027 1.9460 14.6710 REMARK 3 T TENSOR REMARK 3 T11: 0.0952 T22: 0.3436 REMARK 3 T33: 0.0504 T12: 0.0680 REMARK 3 T13: 0.0356 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 2.9090 L22: 1.9514 REMARK 3 L33: 3.5611 L12: 0.5779 REMARK 3 L13: -0.2362 L23: -1.5112 REMARK 3 S TENSOR REMARK 3 S11: 0.0297 S12: 0.7201 S13: -0.0330 REMARK 3 S21: -0.0758 S22: -0.1937 S23: -0.2616 REMARK 3 S31: 0.0914 S32: 0.5263 S33: 0.1640 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 118 A 303 REMARK 3 ORIGIN FOR THE GROUP (A): 68.7535 9.3016 29.7541 REMARK 3 T TENSOR REMARK 3 T11: 0.1010 T22: 0.0365 REMARK 3 T33: 0.0945 T12: -0.0119 REMARK 3 T13: 0.0004 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 2.5769 L22: 1.4978 REMARK 3 L33: 0.9809 L12: -1.1313 REMARK 3 L13: 0.4005 L23: 0.1897 REMARK 3 S TENSOR REMARK 3 S11: 0.0486 S12: 0.0999 S13: 0.1511 REMARK 3 S21: 0.0556 S22: -0.0588 S23: -0.0329 REMARK 3 S31: 0.0476 S32: 0.0372 S33: 0.0102 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 320 A 379 REMARK 3 ORIGIN FOR THE GROUP (A): 71.8660 -1.3736 -0.5715 REMARK 3 T TENSOR REMARK 3 T11: 0.1624 T22: 0.4370 REMARK 3 T33: 0.0084 T12: 0.1782 REMARK 3 T13: 0.0008 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 6.8921 L22: 6.6911 REMARK 3 L33: 8.5166 L12: -0.1790 REMARK 3 L13: -0.8054 L23: 5.3842 REMARK 3 S TENSOR REMARK 3 S11: 0.2849 S12: 0.8621 S13: 0.0684 REMARK 3 S21: -0.1754 S22: -0.3044 S23: 0.0372 REMARK 3 S31: -0.4675 S32: -0.5802 S33: 0.0194 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MAJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000058313. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97937 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23262 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 42.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.69100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, MLPHARE, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-CL, 1.5 M AMMONIUM SULFATE, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 53.60750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.16500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.60750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 22.16500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 107.21500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 44.33000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 ASP A 2 REMARK 465 VAL A 3 REMARK 465 GLY A 4 REMARK 465 GLU A 5 REMARK 465 ARG A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 ASP A 9 REMARK 465 GLN A 10 REMARK 465 GLU A 304 REMARK 465 ARG A 305 REMARK 465 PRO A 306 REMARK 465 ILE A 307 REMARK 465 GLU A 308 REMARK 465 LEU A 309 REMARK 465 PRO A 310 REMARK 465 GLY A 311 REMARK 465 ARG A 312 REMARK 465 GLU A 313 REMARK 465 PRO A 314 REMARK 465 GLU A 315 REMARK 465 HIS A 316 REMARK 465 ALA A 317 REMARK 465 PRO A 318 REMARK 465 PRO A 319 REMARK 465 SER A 380 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 17 CG CD OE1 OE2 REMARK 470 ARG A 65 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 303 CG CD1 CD2 REMARK 470 GLU A 320 CG CD OE1 OE2 REMARK 470 PRO A 337 CG CD REMARK 470 SER A 338 OG REMARK 470 SER A 375 OG REMARK 470 LEU A 379 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 201 O HOH A 519 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 162 19.92 59.43 REMARK 500 ALA A 243 116.17 -171.47 REMARK 500 SER A 301 -54.02 -26.28 REMARK 500 ILE A 302 -75.67 -107.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC65212 RELATED DB: TARGETDB DBREF 3MAJ A 1 380 UNP Q6N563 Q6N563_RHOPA 1 380 SEQADV 3MAJ GLY A -1 UNP Q6N563 EXPRESSION TAG SEQADV 3MAJ HIS A 0 UNP Q6N563 EXPRESSION TAG SEQRES 1 A 382 GLY HIS MSE ASP VAL GLY GLU ARG SER SER ASP GLN GLY SEQRES 2 A 382 THR THR VAL LEU THR GLU ALA GLN ARG ILE ASP TRP MSE SEQRES 3 A 382 ARG LEU ILE ARG ALA GLU ASN VAL GLY PRO ARG THR PHE SEQRES 4 A 382 ARG SER LEU ILE ASN HIS PHE GLY SER ALA ARG ALA ALA SEQRES 5 A 382 LEU GLU ARG LEU PRO GLU LEU ALA ARG ARG GLY GLY ALA SEQRES 6 A 382 ALA ARG ALA GLY ARG ILE PRO SER GLU ASP GLU ALA ARG SEQRES 7 A 382 ARG GLU ILE GLU ALA GLY ARG ARG ILE GLY VAL GLU LEU SEQRES 8 A 382 VAL ALA PRO GLY GLU THR GLY TYR PRO THR ARG LEU ALA SEQRES 9 A 382 THR ILE ASP ASP ALA PRO PRO LEU LEU GLY VAL HIS ALA SEQRES 10 A 382 LEU PRO GLU ALA LEU ALA VAL MSE ALA ARG PRO MSE ILE SEQRES 11 A 382 ALA ILE VAL GLY SER ARG ASN ALA SER GLY ALA GLY LEU SEQRES 12 A 382 LYS PHE ALA GLY GLN LEU ALA ALA ASP LEU GLY ALA ALA SEQRES 13 A 382 GLY PHE VAL VAL ILE SER GLY LEU ALA ARG GLY ILE ASP SEQRES 14 A 382 GLN ALA ALA HIS ARG ALA SER LEU SER SER GLY THR VAL SEQRES 15 A 382 ALA VAL LEU ALA GLY GLY HIS ASP LYS ILE TYR PRO ALA SEQRES 16 A 382 GLU HIS GLU ASP LEU LEU LEU ASP ILE ILE GLN THR ARG SEQRES 17 A 382 GLY ALA ALA ILE SER GLU MSE PRO LEU GLY HIS VAL PRO SEQRES 18 A 382 ARG GLY LYS ASP PHE PRO ARG ARG ASN ARG LEU ILE SER SEQRES 19 A 382 GLY ALA SER VAL GLY VAL ALA VAL ILE GLU ALA ALA TYR SEQRES 20 A 382 ARG SER GLY SER LEU ILE THR ALA ARG ARG ALA ALA ASP SEQRES 21 A 382 GLN GLY ARG GLU VAL PHE ALA VAL PRO GLY SER PRO LEU SEQRES 22 A 382 ASP PRO ARG ALA ALA GLY THR ASN ASP LEU ILE LYS GLN SEQRES 23 A 382 GLY ALA THR LEU ILE THR SER ALA SER ASP ILE VAL GLU SEQRES 24 A 382 ALA VAL ALA SER ILE LEU GLU ARG PRO ILE GLU LEU PRO SEQRES 25 A 382 GLY ARG GLU PRO GLU HIS ALA PRO PRO GLU GLY GLU PRO SEQRES 26 A 382 ASP THR GLY ASP ARG THR ARG ILE LEU ALA LEU LEU GLY SEQRES 27 A 382 PRO SER PRO VAL GLY ILE ASP ASP LEU ILE ARG LEU SER SEQRES 28 A 382 GLY ILE SER PRO ALA VAL VAL ARG THR ILE LEU LEU GLU SEQRES 29 A 382 LEU GLU LEU ALA GLY ARG LEU GLU ARG HIS GLY GLY SER SEQRES 30 A 382 LEU VAL SER LEU SER MODRES 3MAJ MSE A 24 MET SELENOMETHIONINE MODRES 3MAJ MSE A 123 MET SELENOMETHIONINE MODRES 3MAJ MSE A 127 MET SELENOMETHIONINE MODRES 3MAJ MSE A 213 MET SELENOMETHIONINE HET MSE A 24 8 HET MSE A 123 8 HET MSE A 127 8 HET MSE A 213 8 HET SO4 A 401 5 HET SO4 A 402 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 HOH *143(H2 O) HELIX 1 1 THR A 16 ARG A 28 1 13 HELIX 2 2 GLY A 33 GLY A 45 1 13 HELIX 3 3 SER A 46 GLY A 62 1 17 HELIX 4 4 SER A 71 ARG A 84 1 14 HELIX 5 5 PRO A 98 THR A 103 1 6 HELIX 6 6 ALA A 119 ARG A 125 5 7 HELIX 7 7 SER A 137 GLY A 155 1 19 HELIX 8 8 GLY A 165 LEU A 175 1 11 HELIX 9 9 PRO A 192 GLU A 194 5 3 HELIX 10 10 HIS A 195 THR A 205 1 11 HELIX 11 11 LYS A 222 SER A 235 1 14 HELIX 12 12 GLY A 248 GLY A 260 1 13 HELIX 13 13 ASP A 272 ARG A 274 5 3 HELIX 14 14 ALA A 275 GLN A 284 1 10 HELIX 15 15 SER A 291 ALA A 300 1 10 HELIX 16 16 GLY A 326 LEU A 335 1 10 HELIX 17 17 ILE A 342 GLY A 350 1 9 HELIX 18 18 SER A 352 ALA A 366 1 15 SHEET 1 A 9 VAL A 87 VAL A 90 0 SHEET 2 A 9 LEU A 111 HIS A 114 -1 O VAL A 113 N GLU A 88 SHEET 3 A 9 ALA A 208 SER A 211 -1 O ALA A 209 N HIS A 114 SHEET 4 A 9 THR A 179 VAL A 182 1 N ALA A 181 O ILE A 210 SHEET 5 A 9 VAL A 157 SER A 160 1 N VAL A 158 O VAL A 180 SHEET 6 A 9 MSE A 127 VAL A 131 1 N ILE A 128 O VAL A 157 SHEET 7 A 9 VAL A 238 VAL A 240 1 O ALA A 239 N ALA A 129 SHEET 8 A 9 VAL A 263 ALA A 265 1 O PHE A 264 N VAL A 240 SHEET 9 A 9 THR A 287 LEU A 288 1 O THR A 287 N VAL A 263 SHEET 1 B 3 VAL A 340 GLY A 341 0 SHEET 2 B 3 LEU A 376 SER A 378 -1 O VAL A 377 N VAL A 340 SHEET 3 B 3 GLU A 370 ARG A 371 -1 N GLU A 370 O SER A 378 LINK C TRP A 23 N MSE A 24 1555 1555 1.33 LINK C MSE A 24 N ARG A 25 1555 1555 1.34 LINK C VAL A 122 N MSE A 123 1555 1555 1.34 LINK C MSE A 123 N ALA A 124 1555 1555 1.33 LINK C PRO A 126 N MSE A 127 1555 1555 1.33 LINK C MSE A 127 N ILE A 128 1555 1555 1.33 LINK C GLU A 212 N MSE A 213 1555 1555 1.33 LINK C MSE A 213 N PRO A 214 1555 1555 1.36 CISPEP 1 TYR A 191 PRO A 192 0 -1.83 SITE 1 AC1 8 SER A 133 ARG A 134 ASN A 135 SER A 247 SITE 2 AC1 8 HOH A 384 HOH A 433 HOH A 435 HOH A 525 SITE 1 AC2 3 ILE A 251 ARG A 254 ARG A 255 CRYST1 107.215 44.330 75.810 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009327 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022558 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013191 0.00000