HEADER PLANT PROTEIN 24-MAR-10 3MAL TITLE CRYSTAL STRUCTURE OF THE SDF2-LIKE PROTEIN FROM ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SDF2-LIKE PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS, THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT2G25110, F13D4.70, U14608; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PGEX-6P-1; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PLASMID KEYWDS TREFOIL FOLD, MIR MOTIFS, UNFOLDED PROTEIN RESPONSE, PUTATIVE SUGAR KEYWDS 2 BINDING PROTEIN, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.RAVAUD,J.RADZIMANOWSKI,I.SINNING REVDAT 4 06-SEP-23 3MAL 1 REMARK SEQADV REVDAT 3 16-JUN-10 3MAL 1 JRNL REVDAT 2 28-APR-10 3MAL 1 JRNL REVDAT 1 07-APR-10 3MAL 0 JRNL AUTH A.SCHOTT,S.RAVAUD,S.KELLER,J.RADZIMANOWSKI,C.VIOTTI, JRNL AUTH 2 S.HILLMER,I.SINNING,S.STRAHL JRNL TITL ARABIDOPSIS STROMAL-DERIVED FACTOR2 (SDF2) IS A CRUCIAL JRNL TITL 2 TARGET OF THE UNFOLDED PROTEIN RESPONSE IN THE ENDOPLASMIC JRNL TITL 3 RETICULUM. JRNL REF J.BIOL.CHEM. V. 285 18113 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20378538 JRNL DOI 10.1074/JBC.M110.117176 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0077 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1344 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1887 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.2300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2846 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.165 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.221 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2976 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4030 ; 1.506 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 374 ; 7.663 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;39.290 ;24.222 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 517 ;15.453 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;15.529 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 426 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2248 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1805 ; 0.794 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2913 ; 1.449 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1171 ; 2.245 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1110 ; 3.640 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MAL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000058315. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26693 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 53.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : 0.11600 REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : 0.38000 REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1T9F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 0.2 M AMMONIUM SULPHATE, REMARK 280 22.5% (W/V) PEG 3350, PH 7.7, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.11433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.22867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.67150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.78583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 11.55717 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 20 REMARK 465 PRO A 21 REMARK 465 LEU A 22 REMARK 465 GLY A 23 REMARK 465 SER A 24 REMARK 465 ALA A 25 REMARK 465 SER A 26 REMARK 465 ALA A 27 REMARK 465 ALA A 28 REMARK 465 ALA A 29 REMARK 465 SER A 30 REMARK 465 GLY A 31 REMARK 465 LYS A 32 REMARK 465 GLU A 33 REMARK 465 GLY A 34 REMARK 465 SER A 216 REMARK 465 SER A 217 REMARK 465 LYS A 218 REMARK 465 GLY B 20 REMARK 465 PRO B 21 REMARK 465 LEU B 22 REMARK 465 GLY B 23 REMARK 465 SER B 24 REMARK 465 ALA B 25 REMARK 465 SER B 26 REMARK 465 ALA B 27 REMARK 465 ALA B 28 REMARK 465 ALA B 29 REMARK 465 SER B 30 REMARK 465 GLY B 31 REMARK 465 LYS B 32 REMARK 465 GLU B 33 REMARK 465 GLY B 34 REMARK 465 SER B 216 REMARK 465 SER B 217 REMARK 465 LYS B 218 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE A 84 CA CB CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP B 160 CB ASP B 160 CG -0.129 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 63 -146.60 -123.54 REMARK 500 SER A 63 -147.83 -122.30 REMARK 500 ASP A 78 102.08 -168.52 REMARK 500 HIS A 119 177.33 172.21 REMARK 500 LEU A 120 59.22 -90.70 REMARK 500 ASP A 136 -162.53 -172.97 REMARK 500 GLN A 182 -54.04 -120.36 REMARK 500 HIS B 57 167.64 175.80 REMARK 500 ASP B 78 100.85 -171.12 REMARK 500 HIS B 119 -179.05 177.36 REMARK 500 ASP B 136 -148.74 -159.60 REMARK 500 ASN B 139 100.61 -161.49 REMARK 500 ARG B 183 -93.30 -109.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 90 THR A 91 -144.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 3 DBREF 3MAL A 24 218 UNP Q93ZE8 SDF2_ARATH 24 218 DBREF 3MAL B 24 218 UNP Q93ZE8 SDF2_ARATH 24 218 SEQADV 3MAL GLY A 20 UNP Q93ZE8 EXPRESSION TAG SEQADV 3MAL PRO A 21 UNP Q93ZE8 EXPRESSION TAG SEQADV 3MAL LEU A 22 UNP Q93ZE8 EXPRESSION TAG SEQADV 3MAL GLY A 23 UNP Q93ZE8 EXPRESSION TAG SEQADV 3MAL GLY B 20 UNP Q93ZE8 EXPRESSION TAG SEQADV 3MAL PRO B 21 UNP Q93ZE8 EXPRESSION TAG SEQADV 3MAL LEU B 22 UNP Q93ZE8 EXPRESSION TAG SEQADV 3MAL GLY B 23 UNP Q93ZE8 EXPRESSION TAG SEQRES 1 A 199 GLY PRO LEU GLY SER ALA SER ALA ALA ALA SER GLY LYS SEQRES 2 A 199 GLU GLY VAL GLU ILE THR TYR GLY SER ALA ILE LYS LEU SEQRES 3 A 199 MET HIS GLU LYS THR LYS PHE ARG LEU HIS SER HIS ASP SEQRES 4 A 199 VAL PRO TYR GLY SER GLY SER GLY GLN GLN SER VAL THR SEQRES 5 A 199 GLY PHE PRO GLY VAL VAL ASP SER ASN SER TYR TRP ILE SEQRES 6 A 199 VAL LYS PRO VAL PRO GLY THR THR GLU LYS GLN GLY ASP SEQRES 7 A 199 ALA VAL LYS SER GLY ALA THR ILE ARG LEU GLN HIS MET SEQRES 8 A 199 LYS THR ARG LYS TRP LEU HIS SER HIS LEU HIS ALA SER SEQRES 9 A 199 PRO ILE SER GLY ASN LEU GLU VAL SER CYS PHE GLY ASP SEQRES 10 A 199 ASP THR ASN SER ASP THR GLY ASP HIS TRP LYS LEU ILE SEQRES 11 A 199 ILE GLU GLY SER GLY LYS THR TRP LYS GLN ASP GLN ARG SEQRES 12 A 199 VAL ARG LEU GLN HIS ILE ASP THR SER GLY TYR LEU HIS SEQRES 13 A 199 SER HIS ASP LYS LYS TYR GLN ARG ILE ALA GLY GLY GLN SEQRES 14 A 199 GLN GLU VAL CYS GLY ILE ARG GLU LYS LYS ALA ASP ASN SEQRES 15 A 199 ILE TRP LEU ALA ALA GLU GLY VAL TYR LEU PRO LEU ASN SEQRES 16 A 199 GLU SER SER LYS SEQRES 1 B 199 GLY PRO LEU GLY SER ALA SER ALA ALA ALA SER GLY LYS SEQRES 2 B 199 GLU GLY VAL GLU ILE THR TYR GLY SER ALA ILE LYS LEU SEQRES 3 B 199 MET HIS GLU LYS THR LYS PHE ARG LEU HIS SER HIS ASP SEQRES 4 B 199 VAL PRO TYR GLY SER GLY SER GLY GLN GLN SER VAL THR SEQRES 5 B 199 GLY PHE PRO GLY VAL VAL ASP SER ASN SER TYR TRP ILE SEQRES 6 B 199 VAL LYS PRO VAL PRO GLY THR THR GLU LYS GLN GLY ASP SEQRES 7 B 199 ALA VAL LYS SER GLY ALA THR ILE ARG LEU GLN HIS MET SEQRES 8 B 199 LYS THR ARG LYS TRP LEU HIS SER HIS LEU HIS ALA SER SEQRES 9 B 199 PRO ILE SER GLY ASN LEU GLU VAL SER CYS PHE GLY ASP SEQRES 10 B 199 ASP THR ASN SER ASP THR GLY ASP HIS TRP LYS LEU ILE SEQRES 11 B 199 ILE GLU GLY SER GLY LYS THR TRP LYS GLN ASP GLN ARG SEQRES 12 B 199 VAL ARG LEU GLN HIS ILE ASP THR SER GLY TYR LEU HIS SEQRES 13 B 199 SER HIS ASP LYS LYS TYR GLN ARG ILE ALA GLY GLY GLN SEQRES 14 B 199 GLN GLU VAL CYS GLY ILE ARG GLU LYS LYS ALA ASP ASN SEQRES 15 B 199 ILE TRP LEU ALA ALA GLU GLY VAL TYR LEU PRO LEU ASN SEQRES 16 B 199 GLU SER SER LYS HET SO4 A 1 5 HET SO4 A 2 5 HET SO4 A 3 5 HET EDO A 219 4 HET EDO B 2 4 HET EDO B 3 4 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 EDO 3(C2 H6 O2) FORMUL 9 HOH *260(H2 O) HELIX 1 1 ASP A 78 SER A 81 5 4 HELIX 2 2 ASP A 141 ASP A 144 5 4 HELIX 3 3 LYS A 198 ASN A 201 5 4 HELIX 4 4 ASP B 78 SER B 81 5 4 HELIX 5 5 ASP B 141 ASP B 144 5 4 HELIX 6 6 LYS B 198 ASN B 201 5 4 SHEET 1 A 7 ALA A 42 HIS A 47 0 SHEET 2 A 7 TRP A 83 LYS A 86 -1 O TRP A 83 N ILE A 43 SHEET 3 A 7 THR A 104 HIS A 109 -1 O GLN A 108 N ILE A 84 SHEET 4 A 7 TRP A 146 ILE A 150 -1 O TRP A 146 N ILE A 105 SHEET 5 A 7 ARG A 162 HIS A 167 -1 O GLN A 166 N LYS A 147 SHEET 6 A 7 TRP A 203 VAL A 209 -1 O TRP A 203 N VAL A 163 SHEET 7 A 7 ALA A 42 HIS A 47 -1 N MET A 46 O LEU A 204 SHEET 1 B 5 ARG A 53 PRO A 60 0 SHEET 2 B 5 GLN A 68 PHE A 73 -1 O PHE A 73 N ARG A 53 SHEET 3 B 5 LEU A 129 PHE A 134 -1 O CYS A 133 N GLN A 68 SHEET 4 B 5 GLN A 189 ILE A 194 -1 O GLY A 193 N LEU A 129 SHEET 5 B 5 TYR A 173 LYS A 180 -1 N TYR A 173 O ILE A 194 SHEET 1 C 5 TRP A 115 ALA A 122 0 SHEET 2 C 5 LEU A 129 PHE A 134 -1 O GLU A 130 N HIS A 121 SHEET 3 C 5 GLN A 68 PHE A 73 -1 N GLN A 68 O CYS A 133 SHEET 4 C 5 GLN A 189 ILE A 194 -1 O GLN A 189 N GLY A 72 SHEET 5 C 5 TYR A 173 LYS A 180 -1 N TYR A 173 O ILE A 194 SHEET 1 D 7 ALA B 42 HIS B 47 0 SHEET 2 D 7 TRP B 83 LYS B 86 -1 O TRP B 83 N ILE B 43 SHEET 3 D 7 THR B 104 HIS B 109 -1 O ARG B 106 N LYS B 86 SHEET 4 D 7 TRP B 146 ILE B 150 -1 O TRP B 146 N ILE B 105 SHEET 5 D 7 VAL B 163 HIS B 167 -1 O GLN B 166 N LYS B 147 SHEET 6 D 7 TRP B 203 VAL B 209 -1 O TRP B 203 N VAL B 163 SHEET 7 D 7 ALA B 42 HIS B 47 -1 N MET B 46 O LEU B 204 SHEET 1 E 5 ARG B 53 PRO B 60 0 SHEET 2 E 5 GLN B 68 PHE B 73 -1 O PHE B 73 N ARG B 53 SHEET 3 E 5 LEU B 129 PHE B 134 -1 O CYS B 133 N GLN B 68 SHEET 4 E 5 GLN B 189 ILE B 194 -1 O GLY B 193 N LEU B 129 SHEET 5 E 5 TYR B 173 LYS B 180 -1 N LYS B 179 O GLU B 190 SHEET 1 F 5 TRP B 115 ALA B 122 0 SHEET 2 F 5 LEU B 129 PHE B 134 -1 O GLU B 130 N HIS B 121 SHEET 3 F 5 GLN B 68 PHE B 73 -1 N GLN B 68 O CYS B 133 SHEET 4 F 5 GLN B 189 ILE B 194 -1 O GLN B 189 N GLY B 72 SHEET 5 F 5 TYR B 173 LYS B 180 -1 N LYS B 179 O GLU B 190 SITE 1 AC1 8 GLY A 154 LYS A 158 GLN A 161 HOH A 227 SITE 2 AC1 8 HOH A 270 HOH A 318 LYS B 198 ALA B 199 SITE 1 AC2 3 ARG A 183 HIS B 121 ARG B 183 SITE 1 AC3 7 GLY A 154 LYS A 155 THR A 156 LYS A 158 SITE 2 AC3 7 HOH A 258 HOH A 340 LYS B 49 SITE 1 AC4 5 GLN A 182 ARG A 183 GLN B 182 ARG B 183 SITE 2 AC4 5 HOH B 303 SITE 1 AC5 8 TYR B 39 PRO B 87 VAL B 88 THR B 91 SITE 2 AC5 8 GLU B 93 ALA B 103 THR B 104 HOH B 320 SITE 1 AC6 3 LYS B 155 THR B 156 LYS B 158 CRYST1 96.130 96.130 69.343 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010403 0.006006 0.000000 0.00000 SCALE2 0.000000 0.012012 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014421 0.00000