HEADER TRANSFERASE/DNA 24-MAR-10 3MAQ TITLE CRYSTAL STRUCTURE OF E.COLI POL II-NORMAL DNA-DGTP TERNARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE II; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POL II; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'- COMPND 10 D(*TP*AP*CP*GP*TP*AP*CP*GP*CP*TP*AP*GP*GP*CP*AP*CP*A)-3'); COMPND 11 CHAIN: T; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*GP*TP*GP*CP*CP*TP*AP*GP*CP*GP*TP*AP*(DOC))-3'); COMPND 15 CHAIN: P; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: B0060, DINA, JW0059, POLB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET28 WITH PRESCISSION PROTEASE SOURCE 11 CLEAVAGE SITE; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 OTHER_DETAILS: CHEMICAL SYNTHESIS; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 OTHER_DETAILS: CHEMICAL SYNTHESIS KEYWDS PROTEIN-DNA COMPLEX, DNA DAMAGE, DNA REPAIR, DNA-BINDING, DNA- KEYWDS 2 DIRECTED DNA POLYMERASE, NUCLEOTIDYLTRANSFERASE, SOS RESPONSE, KEYWDS 3 TRANSFERASE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.YANG,F.WANG REVDAT 4 06-SEP-23 3MAQ 1 REMARK REVDAT 3 06-OCT-21 3MAQ 1 REMARK SEQADV LINK REVDAT 2 13-JUL-11 3MAQ 1 VERSN REVDAT 1 07-APR-10 3MAQ 0 SPRSDE 07-APR-10 3MAQ 3K5A JRNL AUTH F.WANG,W.YANG JRNL TITL STRUCTURAL INSIGHT INTO TRANSLESION SYNTHESIS BY DNA POL II JRNL REF CELL(CAMBRIDGE,MASS.) V. 139 1279 2009 JRNL REFN ISSN 0092-8674 JRNL PMID 20064374 JRNL DOI 10.1016/J.CELL.2009.11.043 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 37503 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THOUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 932 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.49 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 88 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6306 REMARK 3 NUCLEIC ACID ATOMS : 607 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 391 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.30 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.020 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.05 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.976 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3MAQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000058319. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 95.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40765 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.16100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.69200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 3K57 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, 20% PEGMME5000, 0.2 M REMARK 280 AMMONIUM SULFATE , PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.46550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.11150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.36350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.11150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.46550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.36350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TRIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 LYS A 305 REMARK 465 SER A 306 REMARK 465 ILE A 307 REMARK 465 ASP A 308 REMARK 465 ASN A 309 REMARK 465 PRO A 310 REMARK 465 TRP A 311 REMARK 465 GLY A 781 REMARK 465 LEU A 782 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT T 802 C1' - O4' - C4' ANGL. DEV. = -6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 121 -82.74 -116.20 REMARK 500 PHE A 228 -73.03 -107.02 REMARK 500 LYS A 261 44.24 -108.46 REMARK 500 ASN A 262 139.79 -19.74 REMARK 500 SER A 414 89.06 40.80 REMARK 500 THR A 546 -68.53 63.52 REMARK 500 ARG A 725 178.65 74.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 419 OD2 REMARK 620 2 TYR A 420 O 81.8 REMARK 620 3 ASP A 547 OD1 90.7 98.7 REMARK 620 4 DGT A 914 O1G 85.5 101.8 158.4 REMARK 620 5 DGT A 914 O2B 179.0 99.2 89.1 94.2 REMARK 620 6 DGT A 914 O2A 98.4 164.3 65.6 93.8 80.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 419 OD1 REMARK 620 2 ASP A 547 OD2 96.7 REMARK 620 3 DGT A 914 O2A 102.3 80.5 REMARK 620 4 HOH A1003 O 95.9 166.8 93.2 REMARK 620 5 HOH A1139 O 97.0 91.9 159.9 90.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT A 914 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3K57 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E.COLI POL II-NORMAL DNA-DATP TERNARY COMPLEX REMARK 900 RELATED ID: 3K58 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E.COLI POL II-NORMAL DNA-DTTP TERNARY COMPLEX REMARK 900 RELATED ID: 3K59 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E.COLI POL II-NORMAL DNA-DCTP TERNARY COMPLEX REMARK 900 RELATED ID: 3K5L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E.COLI POL II-ABASIC DNA-DATP LT(0, 3) TERNARY REMARK 900 COMPLEX REMARK 900 RELATED ID: 3K5M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E.COLI POL II-ABASIC DNA-DDGTP LT(-2, 2) REMARK 900 TERNARY COMPLEX REMARK 900 RELATED ID: 3K5N RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E.COLI POL II-ABASIC DNA BINARY COMPLEX REMARK 900 RELATED ID: 3K5O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E.COLI POL II DBREF 3MAQ A 1 783 UNP P21189 DPO2_ECOLI 1 783 DBREF 3MAQ T 802 818 PDB 3MAQ 3MAQ 802 818 DBREF 3MAQ P 901 913 PDB 3MAQ 3MAQ 901 913 SEQADV 3MAQ GLY A -2 UNP P21189 EXPRESSION TAG SEQADV 3MAQ PRO A -1 UNP P21189 EXPRESSION TAG SEQADV 3MAQ HIS A 0 UNP P21189 EXPRESSION TAG SEQADV 3MAQ ASN A 335 UNP P21189 ASP 335 ENGINEERED MUTATION SEQRES 1 A 786 GLY PRO HIS MET ALA GLN ALA GLY PHE ILE LEU THR ARG SEQRES 2 A 786 HIS TRP ARG ASP THR PRO GLN GLY THR GLU VAL SER PHE SEQRES 3 A 786 TRP LEU ALA THR ASP ASN GLY PRO LEU GLN VAL THR LEU SEQRES 4 A 786 ALA PRO GLN GLU SER VAL ALA PHE ILE PRO ALA ASP GLN SEQRES 5 A 786 VAL PRO ARG ALA GLN HIS ILE LEU GLN GLY GLU GLN GLY SEQRES 6 A 786 PHE ARG LEU THR PRO LEU ALA LEU LYS ASP PHE HIS ARG SEQRES 7 A 786 GLN PRO VAL TYR GLY LEU TYR CYS ARG ALA HIS ARG GLN SEQRES 8 A 786 LEU MET ASN TYR GLU LYS ARG LEU ARG GLU GLY GLY VAL SEQRES 9 A 786 THR VAL TYR GLU ALA ASP VAL ARG PRO PRO GLU ARG TYR SEQRES 10 A 786 LEU MET GLU ARG PHE ILE THR SER PRO VAL TRP VAL GLU SEQRES 11 A 786 GLY ASP MET HIS ASN GLY THR ILE VAL ASN ALA ARG LEU SEQRES 12 A 786 LYS PRO HIS PRO ASP TYR ARG PRO PRO LEU LYS TRP VAL SEQRES 13 A 786 SER ILE ASP ILE GLU THR THR ARG HIS GLY GLU LEU TYR SEQRES 14 A 786 CYS ILE GLY LEU GLU GLY CYS GLY GLN ARG ILE VAL TYR SEQRES 15 A 786 MET LEU GLY PRO GLU ASN GLY ASP ALA SER SER LEU ASP SEQRES 16 A 786 PHE GLU LEU GLU TYR VAL ALA SER ARG PRO GLN LEU LEU SEQRES 17 A 786 GLU LYS LEU ASN ALA TRP PHE ALA ASN TYR ASP PRO ASP SEQRES 18 A 786 VAL ILE ILE GLY TRP ASN VAL VAL GLN PHE ASP LEU ARG SEQRES 19 A 786 MET LEU GLN LYS HIS ALA GLU ARG TYR ARG LEU PRO LEU SEQRES 20 A 786 ARG LEU GLY ARG ASP ASN SER GLU LEU GLU TRP ARG GLU SEQRES 21 A 786 HIS GLY PHE LYS ASN GLY VAL PHE PHE ALA GLN ALA LYS SEQRES 22 A 786 GLY ARG LEU ILE ILE ASP GLY ILE GLU ALA LEU LYS SER SEQRES 23 A 786 ALA PHE TRP ASN PHE SER SER PHE SER LEU GLU THR VAL SEQRES 24 A 786 ALA GLN GLU LEU LEU GLY GLU GLY LYS SER ILE ASP ASN SEQRES 25 A 786 PRO TRP ASP ARG MET ASP GLU ILE ASP ARG ARG PHE ALA SEQRES 26 A 786 GLU ASP LYS PRO ALA LEU ALA THR TYR ASN LEU LYS ASN SEQRES 27 A 786 CYS GLU LEU VAL THR GLN ILE PHE HIS LYS THR GLU ILE SEQRES 28 A 786 MET PRO PHE LEU LEU GLU ARG ALA THR VAL ASN GLY LEU SEQRES 29 A 786 PRO VAL ASP ARG HIS GLY GLY SER VAL ALA ALA PHE GLY SEQRES 30 A 786 HIS LEU TYR PHE PRO ARG MET HIS ARG ALA GLY TYR VAL SEQRES 31 A 786 ALA PRO ASN LEU GLY GLU VAL PRO PRO HIS ALA SER PRO SEQRES 32 A 786 GLY GLY TYR VAL MET ASP SER ARG PRO GLY LEU TYR ASP SEQRES 33 A 786 SER VAL LEU VAL LEU ASP TYR LYS SER LEU TYR PRO SER SEQRES 34 A 786 ILE ILE ARG THR PHE LEU ILE ASP PRO VAL GLY LEU VAL SEQRES 35 A 786 GLU GLY MET ALA GLN PRO ASP PRO GLU HIS SER THR GLU SEQRES 36 A 786 GLY PHE LEU ASP ALA TRP PHE SER ARG GLU LYS HIS CYS SEQRES 37 A 786 LEU PRO GLU ILE VAL THR ASN ILE TRP HIS GLY ARG ASP SEQRES 38 A 786 GLU ALA LYS ARG GLN GLY ASN LYS PRO LEU SER GLN ALA SEQRES 39 A 786 LEU LYS ILE ILE MET ASN ALA PHE TYR GLY VAL LEU GLY SEQRES 40 A 786 THR THR ALA CYS ARG PHE PHE ASP PRO ARG LEU ALA SER SEQRES 41 A 786 SER ILE THR MET ARG GLY HIS GLN ILE MET ARG GLN THR SEQRES 42 A 786 LYS ALA LEU ILE GLU ALA GLN GLY TYR ASP VAL ILE TYR SEQRES 43 A 786 GLY ASP THR ASP SER THR PHE VAL TRP LEU LYS GLY ALA SEQRES 44 A 786 HIS SER GLU GLU GLU ALA ALA LYS ILE GLY ARG ALA LEU SEQRES 45 A 786 VAL GLN HIS VAL ASN ALA TRP TRP ALA GLU THR LEU GLN SEQRES 46 A 786 LYS GLN ARG LEU THR SER ALA LEU GLU LEU GLU TYR GLU SEQRES 47 A 786 THR HIS PHE CYS ARG PHE LEU MET PRO THR ILE ARG GLY SEQRES 48 A 786 ALA ASP THR GLY SER LYS LYS ARG TYR ALA GLY LEU ILE SEQRES 49 A 786 GLN GLU GLY ASP LYS GLN ARG MET VAL PHE LYS GLY LEU SEQRES 50 A 786 GLU THR VAL ARG THR ASP TRP THR PRO LEU ALA GLN GLN SEQRES 51 A 786 PHE GLN GLN GLU LEU TYR LEU ARG ILE PHE ARG ASN GLU SEQRES 52 A 786 PRO TYR GLN GLU TYR VAL ARG GLU THR ILE ASP LYS LEU SEQRES 53 A 786 MET ALA GLY GLU LEU ASP ALA ARG LEU VAL TYR ARG LYS SEQRES 54 A 786 ARG LEU ARG ARG PRO LEU SER GLU TYR GLN ARG ASN VAL SEQRES 55 A 786 PRO PRO HIS VAL ARG ALA ALA ARG LEU ALA ASP GLU GLU SEQRES 56 A 786 ASN GLN LYS ARG GLY ARG PRO LEU GLN TYR GLN ASN ARG SEQRES 57 A 786 GLY THR ILE LYS TYR VAL TRP THR THR ASN GLY PRO GLU SEQRES 58 A 786 PRO LEU ASP TYR GLN ARG SER PRO LEU ASP TYR GLU HIS SEQRES 59 A 786 TYR LEU THR ARG GLN LEU GLN PRO VAL ALA GLU GLY ILE SEQRES 60 A 786 LEU PRO PHE ILE GLU ASP ASN PHE ALA THR LEU MET THR SEQRES 61 A 786 GLY GLN LEU GLY LEU PHE SEQRES 1 T 17 DT DA DC DG DT DA DC DG DC DT DA DG DG SEQRES 2 T 17 DC DA DC DA SEQRES 1 P 13 DG DT DG DC DC DT DA DG DC DG DT DA DOC MODRES 3MAQ DOC P 913 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HET DOC P 913 18 HET DGT A 914 31 HET MG A1001 1 HET MG A1002 1 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM DGT 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 DOC C9 H14 N3 O6 P FORMUL 4 DGT C10 H16 N5 O13 P3 FORMUL 5 MG 2(MG 2+) FORMUL 7 HOH *391(H2 O) HELIX 1 1 GLN A 49 LEU A 57 1 9 HELIX 2 2 ALA A 85 GLY A 99 1 15 HELIX 3 3 ARG A 109 ARG A 118 1 10 HELIX 4 4 SER A 200 ASP A 216 1 17 HELIX 5 5 PHE A 228 ARG A 241 1 14 HELIX 6 6 GLY A 277 ALA A 284 1 8 HELIX 7 7 SER A 292 GLY A 302 1 11 HELIX 8 8 ASP A 312 ASP A 324 1 13 HELIX 9 9 ASP A 324 THR A 346 1 23 HELIX 10 10 GLU A 347 GLY A 360 1 14 HELIX 11 11 GLY A 368 ALA A 384 1 17 HELIX 12 12 SER A 422 LEU A 432 1 11 HELIX 13 13 ASP A 434 GLN A 444 1 11 HELIX 14 14 CYS A 465 GLY A 484 1 20 HELIX 15 15 ASN A 485 GLY A 504 1 20 HELIX 16 16 ASP A 512 GLN A 537 1 26 HELIX 17 17 SER A 558 LYS A 583 1 26 HELIX 18 18 LEU A 634 ARG A 638 5 5 HELIX 19 19 THR A 642 ARG A 658 1 17 HELIX 20 20 TYR A 662 ALA A 675 1 14 HELIX 21 21 LEU A 678 LEU A 682 5 5 HELIX 22 22 SER A 693 TYR A 695 5 3 HELIX 23 23 PRO A 700 ARG A 716 1 17 HELIX 24 24 ASP A 748 GLN A 756 1 9 HELIX 25 25 GLN A 756 LEU A 765 1 10 HELIX 26 26 PRO A 766 GLU A 769 5 4 HELIX 27 27 ASN A 771 LEU A 780 1 10 SHEET 1 A 6 MET A 1 ARG A 13 0 SHEET 2 A 6 GLU A 20 THR A 27 -1 O GLU A 20 N ARG A 13 SHEET 3 A 6 GLY A 30 THR A 35 -1 O LEU A 32 N LEU A 25 SHEET 4 A 6 THR A 134 PRO A 142 1 O ILE A 135 N THR A 35 SHEET 5 A 6 PRO A 123 HIS A 131 -1 N HIS A 131 O THR A 134 SHEET 6 A 6 MET A 1 ARG A 13 -1 N GLY A 5 O VAL A 124 SHEET 1 B 3 SER A 41 PRO A 46 0 SHEET 2 B 3 PRO A 77 CYS A 83 -1 O TYR A 79 N ILE A 45 SHEET 3 B 3 PHE A 63 LYS A 71 -1 N THR A 66 O GLY A 80 SHEET 1 C 6 GLU A 194 VAL A 198 0 SHEET 2 C 6 GLN A 175 LEU A 181 1 N MET A 180 O GLU A 196 SHEET 3 C 6 LEU A 165 GLY A 172 -1 N ILE A 168 O TYR A 179 SHEET 4 C 6 TRP A 152 THR A 159 -1 N ASP A 156 O GLY A 169 SHEET 5 C 6 VAL A 219 GLY A 222 1 O ILE A 221 N VAL A 153 SHEET 6 C 6 LEU A 273 ASP A 276 1 O LEU A 273 N ILE A 220 SHEET 1 D 2 GLU A 254 GLU A 257 0 SHEET 2 D 2 PHE A 265 GLN A 268 -1 O GLN A 268 N GLU A 254 SHEET 1 E 6 ASP A 540 TYR A 543 0 SHEET 2 E 6 SER A 548 TRP A 552 -1 O PHE A 550 N TYR A 543 SHEET 3 E 6 GLY A 410 TYR A 420 -1 N LEU A 416 O VAL A 551 SHEET 4 E 6 LEU A 592 MET A 603 -1 O PHE A 601 N TYR A 412 SHEET 5 E 6 TYR A 617 GLU A 623 -1 O LEU A 620 N ARG A 600 SHEET 6 E 6 LYS A 626 LYS A 632 -1 O LYS A 626 N GLU A 623 SHEET 1 F 2 SER A 450 GLU A 452 0 SHEET 2 F 2 TRP A 458 SER A 460 -1 O PHE A 459 N THR A 451 SHEET 1 G 3 TYR A 684 PRO A 691 0 SHEET 2 G 3 ASN A 724 THR A 733 -1 O TYR A 730 N TYR A 684 SHEET 3 G 3 GLY A 736 PRO A 739 -1 O GLU A 738 N VAL A 731 LINK O3' DA P 912 P DOC P 913 1555 1555 1.60 LINK OD2 ASP A 419 MG MG A1001 1555 1555 2.28 LINK OD1 ASP A 419 MG MG A1002 1555 1555 2.44 LINK O TYR A 420 MG MG A1001 1555 1555 2.10 LINK OD1 ASP A 547 MG MG A1001 1555 1555 1.93 LINK OD2 ASP A 547 MG MG A1002 1555 1555 2.19 LINK O1G DGT A 914 MG MG A1001 1555 1555 2.24 LINK O2B DGT A 914 MG MG A1001 1555 1555 2.34 LINK O2A DGT A 914 MG MG A1001 1555 1555 2.34 LINK O2A DGT A 914 MG MG A1002 1555 1555 2.35 LINK MG MG A1002 O HOH A1003 1555 1555 2.43 LINK MG MG A1002 O HOH A1139 1555 1555 2.55 CISPEP 1 GLY A 182 PRO A 183 0 0.28 SITE 1 AC1 24 ASP A 419 TYR A 420 LYS A 421 SER A 422 SITE 2 AC1 24 LEU A 423 TYR A 424 ARG A 477 LYS A 493 SITE 3 AC1 24 ASN A 497 TYR A 500 THR A 546 ASP A 547 SITE 4 AC1 24 HOH A 786 HOH A 791 HOH A 826 HOH A 838 SITE 5 AC1 24 MG A1001 MG A1002 HOH A1003 HOH A1043 SITE 6 AC1 24 HOH A1066 DOC P 913 DC T 804 DG T 805 SITE 1 AC2 4 ASP A 419 TYR A 420 ASP A 547 DGT A 914 SITE 1 AC3 6 ASP A 419 ASP A 547 DGT A 914 HOH A1003 SITE 2 AC3 6 HOH A1139 DOC P 913 CRYST1 80.931 100.727 126.223 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012356 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009928 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007922 0.00000