data_3MB3 # _entry.id 3MB3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3MB3 pdb_00003mb3 10.2210/pdb3mb3/pdb RCSB RCSB058331 ? ? WWPDB D_1000058331 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3MB4 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3MB3 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-03-25 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Filippakopoulos, P.' 1 'Picaud, S.' 2 'Keates, T.' 3 'Ugochukwu, E.' 4 'von Delft, F.' 5 'Arrowsmith, C.H.' 6 'Edwards, A.M.' 7 'Weigelt, J.' 8 'Bountra, C.' 9 'Knapp, S.' 10 'Structural Genomics Consortium (SGC)' 11 # _citation.id primary _citation.title 'Histone recognition and large-scale structural analysis of the human bromodomain family.' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 149 _citation.page_first 214 _citation.page_last 231 _citation.year 2012 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22464331 _citation.pdbx_database_id_DOI 10.1016/j.cell.2012.02.013 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Filippakopoulos, P.' 1 ? primary 'Picaud, S.' 2 ? primary 'Mangos, M.' 3 ? primary 'Keates, T.' 4 ? primary 'Lambert, J.P.' 5 ? primary 'Barsyte-Lovejoy, D.' 6 ? primary 'Felletar, I.' 7 ? primary 'Volkmer, R.' 8 ? primary 'Muller, S.' 9 ? primary 'Pawson, T.' 10 ? primary 'Gingras, A.C.' 11 ? primary 'Arrowsmith, C.H.' 12 ? primary 'Knapp, S.' 13 ? # _cell.length_a 92.090 _cell.length_b 92.090 _cell.length_c 76.120 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3MB3 _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.entry_id 3MB3 _symmetry.Int_Tables_number 152 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PH-interacting protein' 16131.264 1 ? ? 'UNP residues 1302-1434' ? 2 non-polymer syn 1-methylpyrrolidin-2-one 99.131 1 ? ? ? ? 3 water nat water 18.015 85 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PHIP, IRS-1 PH domain-binding protein, WD repeat-containing protein 11' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMDHQPRRRLRNRAQSYDIQAWKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPM ELCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVLSDYKSALRFHKR ; _entity_poly.pdbx_seq_one_letter_code_can ;SMDHQPRRRLRNRAQSYDIQAWKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPM ELCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVLSDYKSALRFHKR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 ASP n 1 4 HIS n 1 5 GLN n 1 6 PRO n 1 7 ARG n 1 8 ARG n 1 9 ARG n 1 10 LEU n 1 11 ARG n 1 12 ASN n 1 13 ARG n 1 14 ALA n 1 15 GLN n 1 16 SER n 1 17 TYR n 1 18 ASP n 1 19 ILE n 1 20 GLN n 1 21 ALA n 1 22 TRP n 1 23 LYS n 1 24 LYS n 1 25 GLN n 1 26 CYS n 1 27 GLU n 1 28 GLU n 1 29 LEU n 1 30 LEU n 1 31 ASN n 1 32 LEU n 1 33 ILE n 1 34 PHE n 1 35 GLN n 1 36 CYS n 1 37 GLU n 1 38 ASP n 1 39 SER n 1 40 GLU n 1 41 PRO n 1 42 PHE n 1 43 ARG n 1 44 GLN n 1 45 PRO n 1 46 VAL n 1 47 ASP n 1 48 LEU n 1 49 LEU n 1 50 GLU n 1 51 TYR n 1 52 PRO n 1 53 ASP n 1 54 TYR n 1 55 ARG n 1 56 ASP n 1 57 ILE n 1 58 ILE n 1 59 ASP n 1 60 THR n 1 61 PRO n 1 62 MET n 1 63 ASP n 1 64 PHE n 1 65 ALA n 1 66 THR n 1 67 VAL n 1 68 ARG n 1 69 GLU n 1 70 THR n 1 71 LEU n 1 72 GLU n 1 73 ALA n 1 74 GLY n 1 75 ASN n 1 76 TYR n 1 77 GLU n 1 78 SER n 1 79 PRO n 1 80 MET n 1 81 GLU n 1 82 LEU n 1 83 CYS n 1 84 LYS n 1 85 ASP n 1 86 VAL n 1 87 ARG n 1 88 LEU n 1 89 ILE n 1 90 PHE n 1 91 SER n 1 92 ASN n 1 93 SER n 1 94 LYS n 1 95 ALA n 1 96 TYR n 1 97 THR n 1 98 PRO n 1 99 SER n 1 100 LYS n 1 101 ARG n 1 102 SER n 1 103 ARG n 1 104 ILE n 1 105 TYR n 1 106 SER n 1 107 MET n 1 108 SER n 1 109 LEU n 1 110 ARG n 1 111 LEU n 1 112 SER n 1 113 ALA n 1 114 PHE n 1 115 PHE n 1 116 GLU n 1 117 GLU n 1 118 HIS n 1 119 ILE n 1 120 SER n 1 121 SER n 1 122 VAL n 1 123 LEU n 1 124 SER n 1 125 ASP n 1 126 TYR n 1 127 LYS n 1 128 SER n 1 129 ALA n 1 130 LEU n 1 131 ARG n 1 132 PHE n 1 133 HIS n 1 134 LYS n 1 135 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PHIP, WDR11' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-R3' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pNIC28-Bsa4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PHIP_HUMAN _struct_ref.pdbx_db_accession Q8WWQ0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DHQPRRRLRNRAQSYDIQAWKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMEL CKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVLSDYKSALRFHKR ; _struct_ref.pdbx_align_begin 1302 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3MB3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 135 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8WWQ0 _struct_ref_seq.db_align_beg 1302 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1434 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1302 _struct_ref_seq.pdbx_auth_seq_align_end 1434 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3MB3 SER A 1 ? UNP Q8WWQ0 ? ? 'expression tag' 1300 1 1 3MB3 MET A 2 ? UNP Q8WWQ0 ? ? 'expression tag' 1301 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MB3 non-polymer . 1-methylpyrrolidin-2-one ? 'C5 H9 N O' 99.131 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3MB3 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews ? _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '11% PEG3350 4% glycerol,0.1M acetate pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2010-03-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9762 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9762 _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04 # _reflns.entry_id 3MB3 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.25 _reflns.d_resolution_low 39.88 _reflns.number_all 18066 _reflns.number_obs 18012 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.081 _reflns.pdbx_Rsym_value 0.081 _reflns.pdbx_netI_over_sigmaI 9.2 _reflns.B_iso_Wilson_estimate 41.1 _reflns.pdbx_redundancy 3.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.25 _reflns_shell.d_res_low 2.37 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.453 _reflns_shell.meanI_over_sigI_obs 2.0 _reflns_shell.pdbx_Rsym_value 0.530 _reflns_shell.pdbx_redundancy 3.7 _reflns_shell.number_unique_all 2602 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3MB3 _refine.ls_d_res_high 2.250 _refine.ls_d_res_low 39.880 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.570 _refine.ls_number_reflns_obs 17988 _refine.ls_number_reflns_all 18065 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: WITH TLS ADDED' _refine.ls_R_factor_all 0.208 _refine.ls_R_factor_obs 0.208 _refine.ls_R_factor_R_work 0.206 _refine.ls_wR_factor_R_work 0.209 _refine.ls_R_factor_R_free 0.257 _refine.ls_wR_factor_R_free 0.255 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 914 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 55.905 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 3.370 _refine.aniso_B[2][2] 3.370 _refine.aniso_B[3][3] -5.060 _refine.aniso_B[1][2] 1.690 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.951 _refine.correlation_coeff_Fo_to_Fc_free 0.930 _refine.overall_SU_R_Cruickshank_DPI 0.134 _refine.overall_SU_R_free 0.145 _refine.pdbx_overall_ESU_R 0.134 _refine.pdbx_overall_ESU_R_Free 0.145 _refine.overall_SU_ML 0.127 _refine.overall_SU_B 12.537 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'Ensemble of 3HMH, 2NXB, 2OO1, 2OSS, 2OUO, 2RFJ, 3DAI, 3D7C, 3DWY' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.803 _refine.B_iso_max 144.07 _refine.B_iso_min 25.23 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 941 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 85 _refine_hist.number_atoms_total 1033 _refine_hist.d_res_high 2.250 _refine_hist.d_res_low 39.880 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 971 0.016 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 672 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1312 1.573 1.985 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 1629 1.946 3.001 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 115 5.861 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 48 29.072 24.167 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 173 15.678 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 7 13.709 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 142 0.078 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1066 0.008 0.021 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 198 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 584 4.490 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 226 1.306 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 948 6.428 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 387 11.001 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 364 14.065 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.250 _refine_ls_shell.d_res_low 2.308 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.390 _refine_ls_shell.number_reflns_R_work 1231 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.356 _refine_ls_shell.R_factor_R_free 0.375 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 80 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1311 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3MB3 _struct.title 'Crystal Structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3MB3 _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text ;PHIP, Pleckstrin homology domain interacting protein, DCAF14, ndrp, DDB1 and CUL4 associated factor 14, SGC, Structural Genomics Consortium, Bromodomain, Phosphoprotein, WD repeat, SIGNALING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 21 ? CYS A 36 ? ALA A 1320 CYS A 1335 1 ? 16 HELX_P HELX_P2 2 GLU A 37 ? ARG A 43 ? GLU A 1336 ARG A 1342 5 ? 7 HELX_P HELX_P3 3 ASP A 53 ? ILE A 58 ? ASP A 1352 ILE A 1357 1 ? 6 HELX_P HELX_P4 4 ASP A 63 ? ALA A 73 ? ASP A 1362 ALA A 1372 1 ? 11 HELX_P HELX_P5 5 SER A 78 ? THR A 97 ? SER A 1377 THR A 1396 1 ? 20 HELX_P HELX_P6 6 SER A 102 ? LEU A 130 ? SER A 1401 LEU A 1429 1 ? 29 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MB3 _struct_site.pdbx_auth_seq_id 1 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE MB3 A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 HOH C . ? HOH A 41 . ? 1_555 ? 2 AC1 7 HOH C . ? HOH A 90 . ? 1_555 ? 3 AC1 7 HOH C . ? HOH A 151 . ? 1_555 ? 4 AC1 7 HOH C . ? HOH A 152 . ? 1_555 ? 5 AC1 7 PRO A 41 ? PRO A 1340 . ? 1_555 ? 6 AC1 7 VAL A 46 ? VAL A 1345 . ? 1_555 ? 7 AC1 7 TYR A 51 ? TYR A 1350 . ? 1_555 ? # _atom_sites.entry_id 3MB3 _atom_sites.fract_transf_matrix[1][1] 0.010859 _atom_sites.fract_transf_matrix[1][2] 0.006269 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012539 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013137 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1300 ? ? ? A . n A 1 2 MET 2 1301 ? ? ? A . n A 1 3 ASP 3 1302 ? ? ? A . n A 1 4 HIS 4 1303 ? ? ? A . n A 1 5 GLN 5 1304 ? ? ? A . n A 1 6 PRO 6 1305 ? ? ? A . n A 1 7 ARG 7 1306 ? ? ? A . n A 1 8 ARG 8 1307 ? ? ? A . n A 1 9 ARG 9 1308 ? ? ? A . n A 1 10 LEU 10 1309 ? ? ? A . n A 1 11 ARG 11 1310 ? ? ? A . n A 1 12 ASN 12 1311 ? ? ? A . n A 1 13 ARG 13 1312 ? ? ? A . n A 1 14 ALA 14 1313 ? ? ? A . n A 1 15 GLN 15 1314 ? ? ? A . n A 1 16 SER 16 1315 ? ? ? A . n A 1 17 TYR 17 1316 1316 TYR TYR A . n A 1 18 ASP 18 1317 1317 ASP ASP A . n A 1 19 ILE 19 1318 1318 ILE ILE A . n A 1 20 GLN 20 1319 1319 GLN GLN A . n A 1 21 ALA 21 1320 1320 ALA ALA A . n A 1 22 TRP 22 1321 1321 TRP TRP A . n A 1 23 LYS 23 1322 1322 LYS LYS A . n A 1 24 LYS 24 1323 1323 LYS LYS A . n A 1 25 GLN 25 1324 1324 GLN GLN A . n A 1 26 CYS 26 1325 1325 CYS CYS A . n A 1 27 GLU 27 1326 1326 GLU GLU A . n A 1 28 GLU 28 1327 1327 GLU GLU A . n A 1 29 LEU 29 1328 1328 LEU LEU A . n A 1 30 LEU 30 1329 1329 LEU LEU A . n A 1 31 ASN 31 1330 1330 ASN ASN A . n A 1 32 LEU 32 1331 1331 LEU LEU A . n A 1 33 ILE 33 1332 1332 ILE ILE A . n A 1 34 PHE 34 1333 1333 PHE PHE A . n A 1 35 GLN 35 1334 1334 GLN GLN A . n A 1 36 CYS 36 1335 1335 CYS CYS A . n A 1 37 GLU 37 1336 1336 GLU GLU A . n A 1 38 ASP 38 1337 1337 ASP ASP A . n A 1 39 SER 39 1338 1338 SER SER A . n A 1 40 GLU 40 1339 1339 GLU GLU A . n A 1 41 PRO 41 1340 1340 PRO PRO A . n A 1 42 PHE 42 1341 1341 PHE PHE A . n A 1 43 ARG 43 1342 1342 ARG ARG A . n A 1 44 GLN 44 1343 1343 GLN GLN A . n A 1 45 PRO 45 1344 1344 PRO PRO A . n A 1 46 VAL 46 1345 1345 VAL VAL A . n A 1 47 ASP 47 1346 1346 ASP ASP A . n A 1 48 LEU 48 1347 1347 LEU LEU A . n A 1 49 LEU 49 1348 1348 LEU LEU A . n A 1 50 GLU 50 1349 1349 GLU GLU A . n A 1 51 TYR 51 1350 1350 TYR TYR A . n A 1 52 PRO 52 1351 1351 PRO PRO A . n A 1 53 ASP 53 1352 1352 ASP ASP A . n A 1 54 TYR 54 1353 1353 TYR TYR A . n A 1 55 ARG 55 1354 1354 ARG ARG A . n A 1 56 ASP 56 1355 1355 ASP ASP A . n A 1 57 ILE 57 1356 1356 ILE ILE A . n A 1 58 ILE 58 1357 1357 ILE ILE A . n A 1 59 ASP 59 1358 1358 ASP ASP A . n A 1 60 THR 60 1359 1359 THR THR A . n A 1 61 PRO 61 1360 1360 PRO PRO A . n A 1 62 MET 62 1361 1361 MET MET A . n A 1 63 ASP 63 1362 1362 ASP ASP A . n A 1 64 PHE 64 1363 1363 PHE PHE A . n A 1 65 ALA 65 1364 1364 ALA ALA A . n A 1 66 THR 66 1365 1365 THR THR A . n A 1 67 VAL 67 1366 1366 VAL VAL A . n A 1 68 ARG 68 1367 1367 ARG ARG A . n A 1 69 GLU 69 1368 1368 GLU GLU A . n A 1 70 THR 70 1369 1369 THR THR A . n A 1 71 LEU 71 1370 1370 LEU LEU A . n A 1 72 GLU 72 1371 1371 GLU GLU A . n A 1 73 ALA 73 1372 1372 ALA ALA A . n A 1 74 GLY 74 1373 1373 GLY GLY A . n A 1 75 ASN 75 1374 1374 ASN ASN A . n A 1 76 TYR 76 1375 1375 TYR TYR A . n A 1 77 GLU 77 1376 1376 GLU GLU A . n A 1 78 SER 78 1377 1377 SER SER A . n A 1 79 PRO 79 1378 1378 PRO PRO A . n A 1 80 MET 80 1379 1379 MET MET A . n A 1 81 GLU 81 1380 1380 GLU GLU A . n A 1 82 LEU 82 1381 1381 LEU LEU A . n A 1 83 CYS 83 1382 1382 CYS CYS A . n A 1 84 LYS 84 1383 1383 LYS LYS A . n A 1 85 ASP 85 1384 1384 ASP ASP A . n A 1 86 VAL 86 1385 1385 VAL VAL A . n A 1 87 ARG 87 1386 1386 ARG ARG A . n A 1 88 LEU 88 1387 1387 LEU LEU A . n A 1 89 ILE 89 1388 1388 ILE ILE A . n A 1 90 PHE 90 1389 1389 PHE PHE A . n A 1 91 SER 91 1390 1390 SER SER A . n A 1 92 ASN 92 1391 1391 ASN ASN A . n A 1 93 SER 93 1392 1392 SER SER A . n A 1 94 LYS 94 1393 1393 LYS LYS A . n A 1 95 ALA 95 1394 1394 ALA ALA A . n A 1 96 TYR 96 1395 1395 TYR TYR A . n A 1 97 THR 97 1396 1396 THR THR A . n A 1 98 PRO 98 1397 1397 PRO PRO A . n A 1 99 SER 99 1398 1398 SER SER A . n A 1 100 LYS 100 1399 1399 LYS LYS A . n A 1 101 ARG 101 1400 1400 ARG ARG A . n A 1 102 SER 102 1401 1401 SER SER A . n A 1 103 ARG 103 1402 1402 ARG ARG A . n A 1 104 ILE 104 1403 1403 ILE ILE A . n A 1 105 TYR 105 1404 1404 TYR TYR A . n A 1 106 SER 106 1405 1405 SER SER A . n A 1 107 MET 107 1406 1406 MET MET A . n A 1 108 SER 108 1407 1407 SER SER A . n A 1 109 LEU 109 1408 1408 LEU LEU A . n A 1 110 ARG 110 1409 1409 ARG ARG A . n A 1 111 LEU 111 1410 1410 LEU LEU A . n A 1 112 SER 112 1411 1411 SER SER A . n A 1 113 ALA 113 1412 1412 ALA ALA A . n A 1 114 PHE 114 1413 1413 PHE PHE A . n A 1 115 PHE 115 1414 1414 PHE PHE A . n A 1 116 GLU 116 1415 1415 GLU GLU A . n A 1 117 GLU 117 1416 1416 GLU GLU A . n A 1 118 HIS 118 1417 1417 HIS HIS A . n A 1 119 ILE 119 1418 1418 ILE ILE A . n A 1 120 SER 120 1419 1419 SER SER A . n A 1 121 SER 121 1420 1420 SER SER A . n A 1 122 VAL 122 1421 1421 VAL VAL A . n A 1 123 LEU 123 1422 1422 LEU LEU A . n A 1 124 SER 124 1423 1423 SER SER A . n A 1 125 ASP 125 1424 1424 ASP ASP A . n A 1 126 TYR 126 1425 1425 TYR TYR A . n A 1 127 LYS 127 1426 1426 LYS LYS A . n A 1 128 SER 128 1427 1427 SER SER A . n A 1 129 ALA 129 1428 1428 ALA ALA A . n A 1 130 LEU 130 1429 1429 LEU LEU A . n A 1 131 ARG 131 1430 1430 ARG ARG A . n A 1 132 PHE 132 1431 1431 PHE PHE A . n A 1 133 HIS 133 1432 ? ? ? A . n A 1 134 LYS 134 1433 ? ? ? A . n A 1 135 ARG 135 1434 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MB3 1 1 1 MB3 MB3 A . C 3 HOH 1 2 2 HOH HOH A . C 3 HOH 2 3 3 HOH HOH A . C 3 HOH 3 4 4 HOH HOH A . C 3 HOH 4 5 5 HOH HOH A . C 3 HOH 5 6 6 HOH HOH A . C 3 HOH 6 8 8 HOH HOH A . C 3 HOH 7 9 9 HOH HOH A . C 3 HOH 8 10 10 HOH HOH A . C 3 HOH 9 11 11 HOH HOH A . C 3 HOH 10 12 12 HOH HOH A . C 3 HOH 11 14 14 HOH HOH A . C 3 HOH 12 15 15 HOH HOH A . C 3 HOH 13 16 16 HOH HOH A . C 3 HOH 14 17 17 HOH HOH A . C 3 HOH 15 18 18 HOH HOH A . C 3 HOH 16 21 21 HOH HOH A . C 3 HOH 17 22 22 HOH HOH A . C 3 HOH 18 23 23 HOH HOH A . C 3 HOH 19 24 24 HOH HOH A . C 3 HOH 20 25 25 HOH HOH A . C 3 HOH 21 27 27 HOH HOH A . C 3 HOH 22 28 28 HOH HOH A . C 3 HOH 23 29 29 HOH HOH A . C 3 HOH 24 30 30 HOH HOH A . C 3 HOH 25 31 31 HOH HOH A . C 3 HOH 26 32 32 HOH HOH A . C 3 HOH 27 33 33 HOH HOH A . C 3 HOH 28 34 34 HOH HOH A . C 3 HOH 29 35 35 HOH HOH A . C 3 HOH 30 36 36 HOH HOH A . C 3 HOH 31 37 37 HOH HOH A . C 3 HOH 32 38 38 HOH HOH A . C 3 HOH 33 39 39 HOH HOH A . C 3 HOH 34 40 40 HOH HOH A . C 3 HOH 35 41 41 HOH HOH A . C 3 HOH 36 42 42 HOH HOH A . C 3 HOH 37 43 43 HOH HOH A . C 3 HOH 38 44 44 HOH HOH A . C 3 HOH 39 45 45 HOH HOH A . C 3 HOH 40 46 46 HOH HOH A . C 3 HOH 41 47 47 HOH HOH A . C 3 HOH 42 48 48 HOH HOH A . C 3 HOH 43 49 49 HOH HOH A . C 3 HOH 44 50 50 HOH HOH A . C 3 HOH 45 52 52 HOH HOH A . C 3 HOH 46 53 53 HOH HOH A . C 3 HOH 47 54 54 HOH HOH A . C 3 HOH 48 55 55 HOH HOH A . C 3 HOH 49 58 58 HOH HOH A . C 3 HOH 50 59 59 HOH HOH A . C 3 HOH 51 60 60 HOH HOH A . C 3 HOH 52 62 62 HOH HOH A . C 3 HOH 53 64 64 HOH HOH A . C 3 HOH 54 65 65 HOH HOH A . C 3 HOH 55 66 66 HOH HOH A . C 3 HOH 56 67 67 HOH HOH A . C 3 HOH 57 70 70 HOH HOH A . C 3 HOH 58 73 73 HOH HOH A . C 3 HOH 59 74 74 HOH HOH A . C 3 HOH 60 75 75 HOH HOH A . C 3 HOH 61 76 76 HOH HOH A . C 3 HOH 62 77 77 HOH HOH A . C 3 HOH 63 80 80 HOH HOH A . C 3 HOH 64 90 90 HOH HOH A . C 3 HOH 65 99 99 HOH HOH A . C 3 HOH 66 101 101 HOH HOH A . C 3 HOH 67 102 102 HOH HOH A . C 3 HOH 68 104 104 HOH HOH A . C 3 HOH 69 105 105 HOH HOH A . C 3 HOH 70 106 106 HOH HOH A . C 3 HOH 71 110 110 HOH HOH A . C 3 HOH 72 111 111 HOH HOH A . C 3 HOH 73 123 123 HOH HOH A . C 3 HOH 74 124 124 HOH HOH A . C 3 HOH 75 150 150 HOH HOH A . C 3 HOH 76 151 151 HOH HOH A . C 3 HOH 77 152 152 HOH HOH A . C 3 HOH 78 153 153 HOH HOH A . C 3 HOH 79 155 155 HOH HOH A . C 3 HOH 80 156 156 HOH HOH A . C 3 HOH 81 157 157 HOH HOH A . C 3 HOH 82 159 159 HOH HOH A . C 3 HOH 83 160 160 HOH HOH A . C 3 HOH 84 161 161 HOH HOH A . C 3 HOH 85 1435 1 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-04-14 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-04-11 4 'Structure model' 1 3 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 4.0280 48.6087 -0.5033 0.1679 0.1067 0.2025 -0.0591 0.0009 0.0254 5.3359 3.0736 7.5811 0.6182 1.1776 0.0520 0.1154 0.0624 -0.1778 0.1014 -0.8573 0.4697 0.0077 0.5043 -0.4725 'X-RAY DIFFRACTION' 2 ? refined 12.5930 52.1035 2.0354 0.2054 0.0368 0.0459 -0.0158 -0.0119 -0.0102 5.7598 1.7049 3.3627 -2.6526 -1.1736 0.5896 0.0317 -0.0249 -0.0068 -0.0133 0.1551 -0.1317 0.0602 0.0087 0.2690 'X-RAY DIFFRACTION' 3 ? refined -2.3376 65.6881 0.5259 0.3777 0.4957 0.2407 0.1243 0.0401 0.2510 12.6561 27.2923 20.1553 -14.1840 -8.5820 12.1527 -0.3808 0.5669 -0.1860 1.4046 0.8955 0.6056 0.4266 -1.2340 -1.3823 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1316 A 1350 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 1351 A 1415 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 1416 A 1431 ? . . . . ? # _pdbx_phasing_MR.entry_id 3MB3 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 51.420 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 39.880 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 39.880 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method mr # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALA . ? other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 PHASER 2.1.4 'Wed Jun 24 14:00:05 2009' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.100 'Jan. 22, 2010' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 CrystalClear . ? ? ? ? 'data collection' ? ? ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 CYS _pdbx_validate_rmsd_bond.auth_seq_id_1 1382 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 SG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 CYS _pdbx_validate_rmsd_bond.auth_seq_id_2 1382 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 A _pdbx_validate_rmsd_bond.bond_value 1.704 _pdbx_validate_rmsd_bond.bond_target_value 1.812 _pdbx_validate_rmsd_bond.bond_deviation -0.108 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.016 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 CYS _pdbx_validate_rmsd_angle.auth_seq_id_1 1335 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 CYS _pdbx_validate_rmsd_angle.auth_seq_id_2 1335 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 SG _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 CYS _pdbx_validate_rmsd_angle.auth_seq_id_3 1335 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 121.15 _pdbx_validate_rmsd_angle.angle_target_value 114.20 _pdbx_validate_rmsd_angle.angle_deviation 6.95 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A TYR 1316 ? CG ? A TYR 17 CG 2 1 Y 1 A TYR 1316 ? CD1 ? A TYR 17 CD1 3 1 Y 1 A TYR 1316 ? CD2 ? A TYR 17 CD2 4 1 Y 1 A TYR 1316 ? CE1 ? A TYR 17 CE1 5 1 Y 1 A TYR 1316 ? CE2 ? A TYR 17 CE2 6 1 Y 1 A TYR 1316 ? CZ ? A TYR 17 CZ 7 1 Y 1 A TYR 1316 ? OH ? A TYR 17 OH 8 1 Y 1 A LYS 1323 ? CE ? A LYS 24 CE 9 1 Y 1 A LYS 1323 ? NZ ? A LYS 24 NZ 10 1 Y 1 A ARG 1430 ? CG ? A ARG 131 CG 11 1 Y 1 A ARG 1430 ? CD ? A ARG 131 CD 12 1 Y 1 A ARG 1430 ? NE ? A ARG 131 NE 13 1 Y 1 A ARG 1430 ? CZ ? A ARG 131 CZ 14 1 Y 1 A ARG 1430 ? NH1 ? A ARG 131 NH1 15 1 Y 1 A ARG 1430 ? NH2 ? A ARG 131 NH2 16 1 Y 1 A PHE 1431 ? CG ? A PHE 132 CG 17 1 Y 1 A PHE 1431 ? CD1 ? A PHE 132 CD1 18 1 Y 1 A PHE 1431 ? CD2 ? A PHE 132 CD2 19 1 Y 1 A PHE 1431 ? CE1 ? A PHE 132 CE1 20 1 Y 1 A PHE 1431 ? CE2 ? A PHE 132 CE2 21 1 Y 1 A PHE 1431 ? CZ ? A PHE 132 CZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 1300 ? A SER 1 2 1 Y 1 A MET 1301 ? A MET 2 3 1 Y 1 A ASP 1302 ? A ASP 3 4 1 Y 1 A HIS 1303 ? A HIS 4 5 1 Y 1 A GLN 1304 ? A GLN 5 6 1 Y 1 A PRO 1305 ? A PRO 6 7 1 Y 1 A ARG 1306 ? A ARG 7 8 1 Y 1 A ARG 1307 ? A ARG 8 9 1 Y 1 A ARG 1308 ? A ARG 9 10 1 Y 1 A LEU 1309 ? A LEU 10 11 1 Y 1 A ARG 1310 ? A ARG 11 12 1 Y 1 A ASN 1311 ? A ASN 12 13 1 Y 1 A ARG 1312 ? A ARG 13 14 1 Y 1 A ALA 1313 ? A ALA 14 15 1 Y 1 A GLN 1314 ? A GLN 15 16 1 Y 1 A SER 1315 ? A SER 16 17 1 Y 1 A HIS 1432 ? A HIS 133 18 1 Y 1 A LYS 1433 ? A LYS 134 19 1 Y 1 A ARG 1434 ? A ARG 135 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MB3 CAA C N N 230 MB3 OAB O N N 231 MB3 CAC C N N 232 MB3 CAD C N N 233 MB3 CAE C N N 234 MB3 CAF C N N 235 MB3 NAG N N N 236 MB3 HAA H N N 237 MB3 HAAA H N N 238 MB3 HAAB H N N 239 MB3 HAC H N N 240 MB3 HACA H N N 241 MB3 HAD H N N 242 MB3 HADA H N N 243 MB3 HAE H N N 244 MB3 HAEA H N N 245 MET N N N N 246 MET CA C N S 247 MET C C N N 248 MET O O N N 249 MET CB C N N 250 MET CG C N N 251 MET SD S N N 252 MET CE C N N 253 MET OXT O N N 254 MET H H N N 255 MET H2 H N N 256 MET HA H N N 257 MET HB2 H N N 258 MET HB3 H N N 259 MET HG2 H N N 260 MET HG3 H N N 261 MET HE1 H N N 262 MET HE2 H N N 263 MET HE3 H N N 264 MET HXT H N N 265 PHE N N N N 266 PHE CA C N S 267 PHE C C N N 268 PHE O O N N 269 PHE CB C N N 270 PHE CG C Y N 271 PHE CD1 C Y N 272 PHE CD2 C Y N 273 PHE CE1 C Y N 274 PHE CE2 C Y N 275 PHE CZ C Y N 276 PHE OXT O N N 277 PHE H H N N 278 PHE H2 H N N 279 PHE HA H N N 280 PHE HB2 H N N 281 PHE HB3 H N N 282 PHE HD1 H N N 283 PHE HD2 H N N 284 PHE HE1 H N N 285 PHE HE2 H N N 286 PHE HZ H N N 287 PHE HXT H N N 288 PRO N N N N 289 PRO CA C N S 290 PRO C C N N 291 PRO O O N N 292 PRO CB C N N 293 PRO CG C N N 294 PRO CD C N N 295 PRO OXT O N N 296 PRO H H N N 297 PRO HA H N N 298 PRO HB2 H N N 299 PRO HB3 H N N 300 PRO HG2 H N N 301 PRO HG3 H N N 302 PRO HD2 H N N 303 PRO HD3 H N N 304 PRO HXT H N N 305 SER N N N N 306 SER CA C N S 307 SER C C N N 308 SER O O N N 309 SER CB C N N 310 SER OG O N N 311 SER OXT O N N 312 SER H H N N 313 SER H2 H N N 314 SER HA H N N 315 SER HB2 H N N 316 SER HB3 H N N 317 SER HG H N N 318 SER HXT H N N 319 THR N N N N 320 THR CA C N S 321 THR C C N N 322 THR O O N N 323 THR CB C N R 324 THR OG1 O N N 325 THR CG2 C N N 326 THR OXT O N N 327 THR H H N N 328 THR H2 H N N 329 THR HA H N N 330 THR HB H N N 331 THR HG1 H N N 332 THR HG21 H N N 333 THR HG22 H N N 334 THR HG23 H N N 335 THR HXT H N N 336 TRP N N N N 337 TRP CA C N S 338 TRP C C N N 339 TRP O O N N 340 TRP CB C N N 341 TRP CG C Y N 342 TRP CD1 C Y N 343 TRP CD2 C Y N 344 TRP NE1 N Y N 345 TRP CE2 C Y N 346 TRP CE3 C Y N 347 TRP CZ2 C Y N 348 TRP CZ3 C Y N 349 TRP CH2 C Y N 350 TRP OXT O N N 351 TRP H H N N 352 TRP H2 H N N 353 TRP HA H N N 354 TRP HB2 H N N 355 TRP HB3 H N N 356 TRP HD1 H N N 357 TRP HE1 H N N 358 TRP HE3 H N N 359 TRP HZ2 H N N 360 TRP HZ3 H N N 361 TRP HH2 H N N 362 TRP HXT H N N 363 TYR N N N N 364 TYR CA C N S 365 TYR C C N N 366 TYR O O N N 367 TYR CB C N N 368 TYR CG C Y N 369 TYR CD1 C Y N 370 TYR CD2 C Y N 371 TYR CE1 C Y N 372 TYR CE2 C Y N 373 TYR CZ C Y N 374 TYR OH O N N 375 TYR OXT O N N 376 TYR H H N N 377 TYR H2 H N N 378 TYR HA H N N 379 TYR HB2 H N N 380 TYR HB3 H N N 381 TYR HD1 H N N 382 TYR HD2 H N N 383 TYR HE1 H N N 384 TYR HE2 H N N 385 TYR HH H N N 386 TYR HXT H N N 387 VAL N N N N 388 VAL CA C N S 389 VAL C C N N 390 VAL O O N N 391 VAL CB C N N 392 VAL CG1 C N N 393 VAL CG2 C N N 394 VAL OXT O N N 395 VAL H H N N 396 VAL H2 H N N 397 VAL HA H N N 398 VAL HB H N N 399 VAL HG11 H N N 400 VAL HG12 H N N 401 VAL HG13 H N N 402 VAL HG21 H N N 403 VAL HG22 H N N 404 VAL HG23 H N N 405 VAL HXT H N N 406 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MB3 CAA NAG sing N N 218 MB3 CAA HAA sing N N 219 MB3 CAA HAAA sing N N 220 MB3 CAA HAAB sing N N 221 MB3 CAF OAB doub N N 222 MB3 CAE CAC sing N N 223 MB3 CAC CAD sing N N 224 MB3 CAC HAC sing N N 225 MB3 CAC HACA sing N N 226 MB3 CAF CAD sing N N 227 MB3 CAD HAD sing N N 228 MB3 CAD HADA sing N N 229 MB3 NAG CAE sing N N 230 MB3 CAE HAE sing N N 231 MB3 CAE HAEA sing N N 232 MB3 NAG CAF sing N N 233 MET N CA sing N N 234 MET N H sing N N 235 MET N H2 sing N N 236 MET CA C sing N N 237 MET CA CB sing N N 238 MET CA HA sing N N 239 MET C O doub N N 240 MET C OXT sing N N 241 MET CB CG sing N N 242 MET CB HB2 sing N N 243 MET CB HB3 sing N N 244 MET CG SD sing N N 245 MET CG HG2 sing N N 246 MET CG HG3 sing N N 247 MET SD CE sing N N 248 MET CE HE1 sing N N 249 MET CE HE2 sing N N 250 MET CE HE3 sing N N 251 MET OXT HXT sing N N 252 PHE N CA sing N N 253 PHE N H sing N N 254 PHE N H2 sing N N 255 PHE CA C sing N N 256 PHE CA CB sing N N 257 PHE CA HA sing N N 258 PHE C O doub N N 259 PHE C OXT sing N N 260 PHE CB CG sing N N 261 PHE CB HB2 sing N N 262 PHE CB HB3 sing N N 263 PHE CG CD1 doub Y N 264 PHE CG CD2 sing Y N 265 PHE CD1 CE1 sing Y N 266 PHE CD1 HD1 sing N N 267 PHE CD2 CE2 doub Y N 268 PHE CD2 HD2 sing N N 269 PHE CE1 CZ doub Y N 270 PHE CE1 HE1 sing N N 271 PHE CE2 CZ sing Y N 272 PHE CE2 HE2 sing N N 273 PHE CZ HZ sing N N 274 PHE OXT HXT sing N N 275 PRO N CA sing N N 276 PRO N CD sing N N 277 PRO N H sing N N 278 PRO CA C sing N N 279 PRO CA CB sing N N 280 PRO CA HA sing N N 281 PRO C O doub N N 282 PRO C OXT sing N N 283 PRO CB CG sing N N 284 PRO CB HB2 sing N N 285 PRO CB HB3 sing N N 286 PRO CG CD sing N N 287 PRO CG HG2 sing N N 288 PRO CG HG3 sing N N 289 PRO CD HD2 sing N N 290 PRO CD HD3 sing N N 291 PRO OXT HXT sing N N 292 SER N CA sing N N 293 SER N H sing N N 294 SER N H2 sing N N 295 SER CA C sing N N 296 SER CA CB sing N N 297 SER CA HA sing N N 298 SER C O doub N N 299 SER C OXT sing N N 300 SER CB OG sing N N 301 SER CB HB2 sing N N 302 SER CB HB3 sing N N 303 SER OG HG sing N N 304 SER OXT HXT sing N N 305 THR N CA sing N N 306 THR N H sing N N 307 THR N H2 sing N N 308 THR CA C sing N N 309 THR CA CB sing N N 310 THR CA HA sing N N 311 THR C O doub N N 312 THR C OXT sing N N 313 THR CB OG1 sing N N 314 THR CB CG2 sing N N 315 THR CB HB sing N N 316 THR OG1 HG1 sing N N 317 THR CG2 HG21 sing N N 318 THR CG2 HG22 sing N N 319 THR CG2 HG23 sing N N 320 THR OXT HXT sing N N 321 TRP N CA sing N N 322 TRP N H sing N N 323 TRP N H2 sing N N 324 TRP CA C sing N N 325 TRP CA CB sing N N 326 TRP CA HA sing N N 327 TRP C O doub N N 328 TRP C OXT sing N N 329 TRP CB CG sing N N 330 TRP CB HB2 sing N N 331 TRP CB HB3 sing N N 332 TRP CG CD1 doub Y N 333 TRP CG CD2 sing Y N 334 TRP CD1 NE1 sing Y N 335 TRP CD1 HD1 sing N N 336 TRP CD2 CE2 doub Y N 337 TRP CD2 CE3 sing Y N 338 TRP NE1 CE2 sing Y N 339 TRP NE1 HE1 sing N N 340 TRP CE2 CZ2 sing Y N 341 TRP CE3 CZ3 doub Y N 342 TRP CE3 HE3 sing N N 343 TRP CZ2 CH2 doub Y N 344 TRP CZ2 HZ2 sing N N 345 TRP CZ3 CH2 sing Y N 346 TRP CZ3 HZ3 sing N N 347 TRP CH2 HH2 sing N N 348 TRP OXT HXT sing N N 349 TYR N CA sing N N 350 TYR N H sing N N 351 TYR N H2 sing N N 352 TYR CA C sing N N 353 TYR CA CB sing N N 354 TYR CA HA sing N N 355 TYR C O doub N N 356 TYR C OXT sing N N 357 TYR CB CG sing N N 358 TYR CB HB2 sing N N 359 TYR CB HB3 sing N N 360 TYR CG CD1 doub Y N 361 TYR CG CD2 sing Y N 362 TYR CD1 CE1 sing Y N 363 TYR CD1 HD1 sing N N 364 TYR CD2 CE2 doub Y N 365 TYR CD2 HD2 sing N N 366 TYR CE1 CZ doub Y N 367 TYR CE1 HE1 sing N N 368 TYR CE2 CZ sing Y N 369 TYR CE2 HE2 sing N N 370 TYR CZ OH sing N N 371 TYR OH HH sing N N 372 TYR OXT HXT sing N N 373 VAL N CA sing N N 374 VAL N H sing N N 375 VAL N H2 sing N N 376 VAL CA C sing N N 377 VAL CA CB sing N N 378 VAL CA HA sing N N 379 VAL C O doub N N 380 VAL C OXT sing N N 381 VAL CB CG1 sing N N 382 VAL CB CG2 sing N N 383 VAL CB HB sing N N 384 VAL CG1 HG11 sing N N 385 VAL CG1 HG12 sing N N 386 VAL CG1 HG13 sing N N 387 VAL CG2 HG21 sing N N 388 VAL CG2 HG22 sing N N 389 VAL CG2 HG23 sing N N 390 VAL OXT HXT sing N N 391 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1-methylpyrrolidin-2-one MB3 3 water HOH # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.entity_id_list _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code _pdbx_initial_refinement_model.details 1 ? 'experimental model' PDB 3HMH 'Ensemble of 3HMH, 2NXB, 2OO1, 2OSS, 2OUO, 2RFJ, 3DAI, 3D7C, 3DWY' 2 ? 'experimental model' PDB 2NXB 'Ensemble of 3HMH, 2NXB, 2OO1, 2OSS, 2OUO, 2RFJ, 3DAI, 3D7C, 3DWY' 3 ? 'experimental model' PDB 2OO1 'Ensemble of 3HMH, 2NXB, 2OO1, 2OSS, 2OUO, 2RFJ, 3DAI, 3D7C, 3DWY' 4 ? 'experimental model' PDB 2OSS 'Ensemble of 3HMH, 2NXB, 2OO1, 2OSS, 2OUO, 2RFJ, 3DAI, 3D7C, 3DWY' 5 ? 'experimental model' PDB 2OUO 'Ensemble of 3HMH, 2NXB, 2OO1, 2OSS, 2OUO, 2RFJ, 3DAI, 3D7C, 3DWY' 6 ? 'experimental model' PDB 2RFJ 'Ensemble of 3HMH, 2NXB, 2OO1, 2OSS, 2OUO, 2RFJ, 3DAI, 3D7C, 3DWY' 7 ? 'experimental model' PDB 3DAI 'Ensemble of 3HMH, 2NXB, 2OO1, 2OSS, 2OUO, 2RFJ, 3DAI, 3D7C, 3DWY' 8 ? 'experimental model' PDB 3D7C 'Ensemble of 3HMH, 2NXB, 2OO1, 2OSS, 2OUO, 2RFJ, 3DAI, 3D7C, 3DWY' 9 ? 'experimental model' PDB 3DWY 'Ensemble of 3HMH, 2NXB, 2OO1, 2OSS, 2OUO, 2RFJ, 3DAI, 3D7C, 3DWY' #