HEADER TRANSCRIPTION 25-MAR-10 3MB4 TITLE CRYSTAL STRUCTURE OF THE FIFTH BROMODOMAIN OF HUMAN POLY-BROMODOMAIN TITLE 2 CONTAINING PROTEIN 1 (PB1) WITH NMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN POLYBROMO-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 645-766; COMPND 5 SYNONYM: HPB1, POLYBROMO-1D, BRG1-ASSOCIATED FACTOR 180, BAF180; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BAF180, PB1, PBRM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS PB1, POLYBROMO 1 ISOFORM 1, BAF180, POLYBROMO-1D, PBRM1, BRG1- KEYWDS 2 ASSOCIATED FACTOR 180, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 3 BROMODOMAIN, CHROMATIN REGULATOR, DNA-BINDING, NUCLEUS, KEYWDS 4 PHOSPHOPROTEIN, TRANSCRIPTION, TRANSCRIPTION REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR P.FILIPPAKOPOULOS,S.PICAUD,T.KEATES,E.UGOCHUKWU,F.VON DELFT, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,J.WEIGELT,C.BOUNTRA,S.KNAPP,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 4 06-SEP-23 3MB4 1 REMARK SEQADV REVDAT 3 08-NOV-17 3MB4 1 REMARK REVDAT 2 11-APR-12 3MB4 1 JRNL VERSN REVDAT 1 14-APR-10 3MB4 0 JRNL AUTH P.FILIPPAKOPOULOS,S.PICAUD,M.MANGOS,T.KEATES,J.P.LAMBERT, JRNL AUTH 2 D.BARSYTE-LOVEJOY,I.FELLETAR,R.VOLKMER,S.MULLER,T.PAWSON, JRNL AUTH 3 A.C.GINGRAS,C.H.ARROWSMITH,S.KNAPP JRNL TITL HISTONE RECOGNITION AND LARGE-SCALE STRUCTURAL ANALYSIS OF JRNL TITL 2 THE HUMAN BROMODOMAIN FAMILY. JRNL REF CELL(CAMBRIDGE,MASS.) V. 149 214 2012 JRNL REFN ISSN 0092-8674 JRNL PMID 22464331 JRNL DOI 10.1016/J.CELL.2012.02.013 REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 35898 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1795 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.66 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.70 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2455 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.4570 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.4390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1896 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.75000 REMARK 3 B22 (A**2) : -0.68000 REMARK 3 B33 (A**2) : -1.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.097 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.137 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1991 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1424 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2668 ; 1.473 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3457 ; 0.934 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 231 ; 4.991 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;33.209 ;24.211 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 394 ;13.335 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;16.528 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 289 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2126 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 380 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1170 ; 2.600 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 455 ; 0.886 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1905 ; 3.655 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 821 ; 6.561 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 762 ; 7.757 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 620 A 648 REMARK 3 ORIGIN FOR THE GROUP (A): 40.8027 46.3513 12.5815 REMARK 3 T TENSOR REMARK 3 T11: 0.0817 T22: 0.1040 REMARK 3 T33: 0.0399 T12: 0.0472 REMARK 3 T13: -0.0093 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 1.2160 L22: 17.3075 REMARK 3 L33: 4.3882 L12: -0.2821 REMARK 3 L13: -0.1004 L23: -7.1975 REMARK 3 S TENSOR REMARK 3 S11: 0.2427 S12: 0.2891 S13: -0.1237 REMARK 3 S21: -0.7270 S22: -0.2061 S23: -0.2517 REMARK 3 S31: 0.1980 S32: 0.0992 S33: -0.0365 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 649 A 674 REMARK 3 ORIGIN FOR THE GROUP (A): 26.5086 45.1933 28.8582 REMARK 3 T TENSOR REMARK 3 T11: 0.2181 T22: 0.0886 REMARK 3 T33: 0.0886 T12: -0.0058 REMARK 3 T13: 0.1377 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 5.4574 L22: 5.2902 REMARK 3 L33: 9.2464 L12: -1.7434 REMARK 3 L13: -3.7180 L23: -0.8579 REMARK 3 S TENSOR REMARK 3 S11: 0.0681 S12: -0.1525 S13: -0.0251 REMARK 3 S21: 0.9820 S22: 0.1183 S23: 0.6512 REMARK 3 S31: -0.3287 S32: -0.6204 S33: -0.1864 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 675 A 682 REMARK 3 ORIGIN FOR THE GROUP (A): 30.3912 53.2283 16.7917 REMARK 3 T TENSOR REMARK 3 T11: 0.0220 T22: 0.3415 REMARK 3 T33: 0.0506 T12: 0.0388 REMARK 3 T13: -0.0076 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.3334 L22: 34.2938 REMARK 3 L33: 21.6707 L12: 0.1744 REMARK 3 L13: 1.4199 L23: -21.7103 REMARK 3 S TENSOR REMARK 3 S11: 0.0417 S12: -0.0914 S13: -0.0607 REMARK 3 S21: 0.0325 S22: 0.7321 S23: 0.8853 REMARK 3 S31: 0.0842 S32: -1.4140 S33: -0.7739 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 683 A 707 REMARK 3 ORIGIN FOR THE GROUP (A): 36.5027 52.5404 25.0042 REMARK 3 T TENSOR REMARK 3 T11: 0.2298 T22: 0.0131 REMARK 3 T33: 0.0278 T12: -0.0324 REMARK 3 T13: -0.0139 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 2.3881 L22: 4.9753 REMARK 3 L33: 5.6310 L12: -1.0227 REMARK 3 L13: 0.6580 L23: -4.1773 REMARK 3 S TENSOR REMARK 3 S11: 0.0454 S12: -0.1200 S13: 0.2295 REMARK 3 S21: 0.8775 S22: -0.0388 S23: -0.1129 REMARK 3 S31: -0.6130 S32: 0.0658 S33: -0.0066 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 708 A 734 REMARK 3 ORIGIN FOR THE GROUP (A): 44.2242 43.7328 25.3955 REMARK 3 T TENSOR REMARK 3 T11: 0.1451 T22: 0.0638 REMARK 3 T33: 0.0959 T12: -0.0174 REMARK 3 T13: -0.1164 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 6.7165 L22: 16.4234 REMARK 3 L33: 14.0686 L12: 4.9618 REMARK 3 L13: -4.7436 L23: -10.5463 REMARK 3 S TENSOR REMARK 3 S11: -0.0458 S12: -0.0447 S13: -0.0038 REMARK 3 S21: 0.9542 S22: -0.3084 S23: -0.7367 REMARK 3 S31: -0.3324 S32: 0.7969 S33: 0.3543 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 619 B 641 REMARK 3 ORIGIN FOR THE GROUP (A): 23.7386 24.0137 6.2037 REMARK 3 T TENSOR REMARK 3 T11: 0.1377 T22: 0.1582 REMARK 3 T33: 0.1486 T12: -0.0049 REMARK 3 T13: -0.0597 T23: 0.1288 REMARK 3 L TENSOR REMARK 3 L11: 0.1605 L22: 8.8305 REMARK 3 L33: 18.2690 L12: 1.0304 REMARK 3 L13: 1.6816 L23: 11.1421 REMARK 3 S TENSOR REMARK 3 S11: -0.0070 S12: 0.0292 S13: 0.0131 REMARK 3 S21: -0.7142 S22: 0.1124 S23: 0.1664 REMARK 3 S31: -0.3581 S32: -0.0008 S33: -0.1053 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 642 B 651 REMARK 3 ORIGIN FOR THE GROUP (A): 23.4243 37.7581 20.5457 REMARK 3 T TENSOR REMARK 3 T11: 0.0976 T22: 0.0366 REMARK 3 T33: 0.1254 T12: 0.0266 REMARK 3 T13: 0.0371 T23: 0.0385 REMARK 3 L TENSOR REMARK 3 L11: 19.6491 L22: 17.4733 REMARK 3 L33: 6.1419 L12: -12.3725 REMARK 3 L13: 4.2492 L23: -2.3135 REMARK 3 S TENSOR REMARK 3 S11: 0.1399 S12: 0.0030 S13: 0.2730 REMARK 3 S21: 0.1294 S22: 0.0887 S23: 0.6283 REMARK 3 S31: -0.5512 S32: -0.3559 S33: -0.2286 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 652 B 671 REMARK 3 ORIGIN FOR THE GROUP (A): 38.0691 24.1373 28.0594 REMARK 3 T TENSOR REMARK 3 T11: 0.2201 T22: 0.0257 REMARK 3 T33: 0.0861 T12: 0.0524 REMARK 3 T13: -0.1180 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 7.1631 L22: 4.7554 REMARK 3 L33: 6.8915 L12: -1.8776 REMARK 3 L13: 4.7256 L23: -2.8848 REMARK 3 S TENSOR REMARK 3 S11: -0.2407 S12: -0.1523 S13: 0.2251 REMARK 3 S21: 0.6326 S22: 0.0685 S23: -0.5974 REMARK 3 S31: 0.2594 S32: 0.1273 S33: 0.1722 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 672 B 707 REMARK 3 ORIGIN FOR THE GROUP (A): 28.5939 19.2707 18.0548 REMARK 3 T TENSOR REMARK 3 T11: 0.0257 T22: 0.0229 REMARK 3 T33: 0.0272 T12: -0.0079 REMARK 3 T13: -0.0060 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 2.4899 L22: 5.8456 REMARK 3 L33: 8.7388 L12: -1.0480 REMARK 3 L13: -0.5415 L23: 2.9566 REMARK 3 S TENSOR REMARK 3 S11: -0.0389 S12: 0.0623 S13: -0.0760 REMARK 3 S21: 0.2456 S22: 0.0619 S23: 0.0659 REMARK 3 S31: 0.4086 S32: -0.1100 S33: -0.0230 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 708 B 734 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6860 26.2462 22.9174 REMARK 3 T TENSOR REMARK 3 T11: 0.1066 T22: 0.1020 REMARK 3 T33: 0.1303 T12: -0.0398 REMARK 3 T13: 0.0983 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 7.7093 L22: 8.3062 REMARK 3 L33: 24.4290 L12: 5.0875 REMARK 3 L13: 6.2348 L23: 7.9917 REMARK 3 S TENSOR REMARK 3 S11: 0.0389 S12: 0.0052 S13: 0.1676 REMARK 3 S21: 0.5507 S22: -0.2936 S23: 0.6235 REMARK 3 S31: 0.9032 S32: -1.3091 S33: 0.2546 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3MB4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000058332. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36037 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.06400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.95500 REMARK 200 R SYM FOR SHELL (I) : 0.81700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.970 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 3G0J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15M NANO3 25% PEG 3350 10% ETHYLENE REMARK 280 GLYCOL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.97850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.48200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.11050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.48200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.97850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.11050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 611 REMARK 465 MET A 612 REMARK 465 SER A 613 REMARK 465 GLY A 614 REMARK 465 ILE A 615 REMARK 465 SER A 616 REMARK 465 PRO A 617 REMARK 465 LYS A 618 REMARK 465 LYS A 619 REMARK 465 SER B 611 REMARK 465 MET B 612 REMARK 465 SER B 613 REMARK 465 GLY B 614 REMARK 465 ILE B 615 REMARK 465 SER B 616 REMARK 465 PRO B 617 REMARK 465 LYS B 618 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 620 OG REMARK 470 ARG A 654 CZ NH1 NH2 REMARK 470 ARG A 729 CD NE CZ NH1 NH2 REMARK 470 GLU A 732 CG CD OE1 OE2 REMARK 470 LYS B 619 CG CD CE NZ REMARK 470 LYS B 722 CD CE NZ REMARK 470 LEU B 731 CG CD1 CD2 REMARK 470 GLU B 732 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 99 O HOH B 259 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 644 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 644 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 CYS B 704 CA - CB - SG ANGL. DEV. = 8.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 642 -178.28 -64.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MB3 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 735 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MB3 B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 735 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 736 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MB3 RELATED DB: PDB DBREF 3MB4 A 613 734 UNP Q86U86 PB1_HUMAN 645 766 DBREF 3MB4 B 613 734 UNP Q86U86 PB1_HUMAN 645 766 SEQADV 3MB4 SER A 611 UNP Q86U86 EXPRESSION TAG SEQADV 3MB4 MET A 612 UNP Q86U86 EXPRESSION TAG SEQADV 3MB4 SER B 611 UNP Q86U86 EXPRESSION TAG SEQADV 3MB4 MET B 612 UNP Q86U86 EXPRESSION TAG SEQRES 1 A 124 SER MET SER GLY ILE SER PRO LYS LYS SER LYS TYR MET SEQRES 2 A 124 THR PRO MET GLN GLN LYS LEU ASN GLU VAL TYR GLU ALA SEQRES 3 A 124 VAL LYS ASN TYR THR ASP LYS ARG GLY ARG ARG LEU SER SEQRES 4 A 124 ALA ILE PHE LEU ARG LEU PRO SER ARG SER GLU LEU PRO SEQRES 5 A 124 ASP TYR TYR LEU THR ILE LYS LYS PRO MET ASP MET GLU SEQRES 6 A 124 LYS ILE ARG SER HIS MET MET ALA ASN LYS TYR GLN ASP SEQRES 7 A 124 ILE ASP SER MET VAL GLU ASP PHE VAL MET MET PHE ASN SEQRES 8 A 124 ASN ALA CYS THR TYR ASN GLU PRO GLU SER LEU ILE TYR SEQRES 9 A 124 LYS ASP ALA LEU VAL LEU HIS LYS VAL LEU LEU GLU THR SEQRES 10 A 124 ARG ARG ASP LEU GLU GLY ASP SEQRES 1 B 124 SER MET SER GLY ILE SER PRO LYS LYS SER LYS TYR MET SEQRES 2 B 124 THR PRO MET GLN GLN LYS LEU ASN GLU VAL TYR GLU ALA SEQRES 3 B 124 VAL LYS ASN TYR THR ASP LYS ARG GLY ARG ARG LEU SER SEQRES 4 B 124 ALA ILE PHE LEU ARG LEU PRO SER ARG SER GLU LEU PRO SEQRES 5 B 124 ASP TYR TYR LEU THR ILE LYS LYS PRO MET ASP MET GLU SEQRES 6 B 124 LYS ILE ARG SER HIS MET MET ALA ASN LYS TYR GLN ASP SEQRES 7 B 124 ILE ASP SER MET VAL GLU ASP PHE VAL MET MET PHE ASN SEQRES 8 B 124 ASN ALA CYS THR TYR ASN GLU PRO GLU SER LEU ILE TYR SEQRES 9 B 124 LYS ASP ALA LEU VAL LEU HIS LYS VAL LEU LEU GLU THR SEQRES 10 B 124 ARG ARG ASP LEU GLU GLY ASP HET EDO A 1 4 HET EDO A 3 4 HET MB3 A 2 7 HET CL A 735 1 HET EDO B 2 4 HET EDO B 4 4 HET EDO B 5 4 HET MB3 B 1 7 HET CL B 735 1 HET CL B 3 1 HET CL B 736 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM MB3 1-METHYLPYRROLIDIN-2-ONE HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 5(C2 H6 O2) FORMUL 5 MB3 2(C5 H9 N O) FORMUL 6 CL 4(CL 1-) FORMUL 14 HOH *208(H2 O) HELIX 1 1 THR A 624 TYR A 640 1 17 HELIX 2 2 ARG A 647 LEU A 653 5 7 HELIX 3 3 LEU A 661 ILE A 668 1 8 HELIX 4 4 ASP A 673 ALA A 683 1 11 HELIX 5 5 ASP A 688 ASN A 707 1 20 HELIX 6 6 SER A 711 LEU A 731 1 21 HELIX 7 7 THR B 624 TYR B 640 1 17 HELIX 8 8 ARG B 647 LEU B 653 5 7 HELIX 9 9 LEU B 661 ILE B 668 1 8 HELIX 10 10 ASP B 673 ALA B 683 1 11 HELIX 11 11 ASP B 688 ASN B 707 1 20 HELIX 12 12 SER B 711 LEU B 731 1 21 SITE 1 AC1 4 HOH A 95 MET B 672 HIS B 680 ASP B 695 SITE 1 AC2 6 HOH A 137 GLU A 710 SER A 711 LEU A 712 SITE 2 AC2 6 ILE A 713 ILE B 713 SITE 1 AC3 6 HOH A 15 HOH A 88 LEU A 655 TYR A 706 SITE 2 AC3 6 ASN A 707 LEU B 712 SITE 1 AC4 2 GLU A 726 LYS B 643 SITE 1 AC5 7 ILE A 713 HOH B 259 ILE B 651 LEU B 712 SITE 2 AC5 7 ILE B 713 ASP B 716 HOH B 737 SITE 1 AC6 5 ARG A 646 ARG A 647 HOH B 100 ARG B 654 SITE 2 AC6 5 CL B 736 SITE 1 AC7 6 MET A 626 ASN A 684 TYR A 686 GLN A 687 SITE 2 AC7 6 HIS B 680 LYS B 685 SITE 1 AC8 3 HOH B 37 TYR B 664 ASN B 707 SITE 1 AC9 2 SER A 657 LYS B 643 SITE 1 BC1 1 GLU B 726 SITE 1 BC2 3 EDO B 4 TYR B 634 GLU B 675 CRYST1 41.957 52.221 134.964 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023834 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019149 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007409 0.00000