data_3MBJ # _entry.id 3MBJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3MBJ pdb_00003mbj 10.2210/pdb3mbj/pdb RCSB RCSB058346 ? ? WWPDB D_1000058346 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type TargetDB 375199 . unspecified PDB 3MBH ;putative phosphomethylpyrimidine kinase (BT_4458) from Bacteroides thetaiotaomicron VPI-5482 at 2.0 A resolution (orthorhombic form with pyridoxal) ; unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3MBJ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-03-25 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of a putative phosphomethylpyrimidine kinase (BT_4458) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.10 A resolution (rhombohedral form) ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3MBJ _cell.length_a 161.627 _cell.length_b 161.627 _cell.length_c 76.138 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3MBJ _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative phosphomethylpyrimidine kinase' 33432.562 1 ? ? ? ? 2 non-polymer syn 'ZINC ION' 65.409 3 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 5 non-polymer syn IMIDAZOLE 69.085 1 ? ? ? ? 6 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 2 ? ? ? ? 7 non-polymer syn '(4R)-2-METHYLPENTANE-2,4-DIOL' 118.174 2 ? ? ? ? 8 water nat water 18.015 124 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Pyridoxine kinase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)YANKVKKIAAVHDLSG(MSE)GRVSLTVVIPILSS(MSE)GFQVCPLPTAVLSNHTQYPGFSFLDLTDE(MSE) PKIIAEWKKLEVQFDAIYTGYLGSPRQIQIVSDFIKDFRQPDSLIVADPVLGDNGRLYTNFD(MSE)E(MSE)VKE (MSE)RHLITKADVITPNLTELFYLLDEPYKADSTDEELKEYLRLLSDKGPQVVIITSVPVHDEPHKTSVYAYNRQGNRY WKVTCPYLPAHYPGTGDTFTSVITGSL(MSE)QGDSLP(MSE)ALDRATQFILQGIRATFGYEYDNREGILLEKVLHNLD (MSE)PIQ(MSE)ASYELI ; _entity_poly.pdbx_seq_one_letter_code_can ;GMYANKVKKIAAVHDLSGMGRVSLTVVIPILSSMGFQVCPLPTAVLSNHTQYPGFSFLDLTDEMPKIIAEWKKLEVQFDA IYTGYLGSPRQIQIVSDFIKDFRQPDSLIVADPVLGDNGRLYTNFDMEMVKEMRHLITKADVITPNLTELFYLLDEPYKA DSTDEELKEYLRLLSDKGPQVVIITSVPVHDEPHKTSVYAYNRQGNRYWKVTCPYLPAHYPGTGDTFTSVITGSLMQGDS LPMALDRATQFILQGIRATFGYEYDNREGILLEKVLHNLDMPIQMASYELI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 375199 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 TYR n 1 4 ALA n 1 5 ASN n 1 6 LYS n 1 7 VAL n 1 8 LYS n 1 9 LYS n 1 10 ILE n 1 11 ALA n 1 12 ALA n 1 13 VAL n 1 14 HIS n 1 15 ASP n 1 16 LEU n 1 17 SER n 1 18 GLY n 1 19 MSE n 1 20 GLY n 1 21 ARG n 1 22 VAL n 1 23 SER n 1 24 LEU n 1 25 THR n 1 26 VAL n 1 27 VAL n 1 28 ILE n 1 29 PRO n 1 30 ILE n 1 31 LEU n 1 32 SER n 1 33 SER n 1 34 MSE n 1 35 GLY n 1 36 PHE n 1 37 GLN n 1 38 VAL n 1 39 CYS n 1 40 PRO n 1 41 LEU n 1 42 PRO n 1 43 THR n 1 44 ALA n 1 45 VAL n 1 46 LEU n 1 47 SER n 1 48 ASN n 1 49 HIS n 1 50 THR n 1 51 GLN n 1 52 TYR n 1 53 PRO n 1 54 GLY n 1 55 PHE n 1 56 SER n 1 57 PHE n 1 58 LEU n 1 59 ASP n 1 60 LEU n 1 61 THR n 1 62 ASP n 1 63 GLU n 1 64 MSE n 1 65 PRO n 1 66 LYS n 1 67 ILE n 1 68 ILE n 1 69 ALA n 1 70 GLU n 1 71 TRP n 1 72 LYS n 1 73 LYS n 1 74 LEU n 1 75 GLU n 1 76 VAL n 1 77 GLN n 1 78 PHE n 1 79 ASP n 1 80 ALA n 1 81 ILE n 1 82 TYR n 1 83 THR n 1 84 GLY n 1 85 TYR n 1 86 LEU n 1 87 GLY n 1 88 SER n 1 89 PRO n 1 90 ARG n 1 91 GLN n 1 92 ILE n 1 93 GLN n 1 94 ILE n 1 95 VAL n 1 96 SER n 1 97 ASP n 1 98 PHE n 1 99 ILE n 1 100 LYS n 1 101 ASP n 1 102 PHE n 1 103 ARG n 1 104 GLN n 1 105 PRO n 1 106 ASP n 1 107 SER n 1 108 LEU n 1 109 ILE n 1 110 VAL n 1 111 ALA n 1 112 ASP n 1 113 PRO n 1 114 VAL n 1 115 LEU n 1 116 GLY n 1 117 ASP n 1 118 ASN n 1 119 GLY n 1 120 ARG n 1 121 LEU n 1 122 TYR n 1 123 THR n 1 124 ASN n 1 125 PHE n 1 126 ASP n 1 127 MSE n 1 128 GLU n 1 129 MSE n 1 130 VAL n 1 131 LYS n 1 132 GLU n 1 133 MSE n 1 134 ARG n 1 135 HIS n 1 136 LEU n 1 137 ILE n 1 138 THR n 1 139 LYS n 1 140 ALA n 1 141 ASP n 1 142 VAL n 1 143 ILE n 1 144 THR n 1 145 PRO n 1 146 ASN n 1 147 LEU n 1 148 THR n 1 149 GLU n 1 150 LEU n 1 151 PHE n 1 152 TYR n 1 153 LEU n 1 154 LEU n 1 155 ASP n 1 156 GLU n 1 157 PRO n 1 158 TYR n 1 159 LYS n 1 160 ALA n 1 161 ASP n 1 162 SER n 1 163 THR n 1 164 ASP n 1 165 GLU n 1 166 GLU n 1 167 LEU n 1 168 LYS n 1 169 GLU n 1 170 TYR n 1 171 LEU n 1 172 ARG n 1 173 LEU n 1 174 LEU n 1 175 SER n 1 176 ASP n 1 177 LYS n 1 178 GLY n 1 179 PRO n 1 180 GLN n 1 181 VAL n 1 182 VAL n 1 183 ILE n 1 184 ILE n 1 185 THR n 1 186 SER n 1 187 VAL n 1 188 PRO n 1 189 VAL n 1 190 HIS n 1 191 ASP n 1 192 GLU n 1 193 PRO n 1 194 HIS n 1 195 LYS n 1 196 THR n 1 197 SER n 1 198 VAL n 1 199 TYR n 1 200 ALA n 1 201 TYR n 1 202 ASN n 1 203 ARG n 1 204 GLN n 1 205 GLY n 1 206 ASN n 1 207 ARG n 1 208 TYR n 1 209 TRP n 1 210 LYS n 1 211 VAL n 1 212 THR n 1 213 CYS n 1 214 PRO n 1 215 TYR n 1 216 LEU n 1 217 PRO n 1 218 ALA n 1 219 HIS n 1 220 TYR n 1 221 PRO n 1 222 GLY n 1 223 THR n 1 224 GLY n 1 225 ASP n 1 226 THR n 1 227 PHE n 1 228 THR n 1 229 SER n 1 230 VAL n 1 231 ILE n 1 232 THR n 1 233 GLY n 1 234 SER n 1 235 LEU n 1 236 MSE n 1 237 GLN n 1 238 GLY n 1 239 ASP n 1 240 SER n 1 241 LEU n 1 242 PRO n 1 243 MSE n 1 244 ALA n 1 245 LEU n 1 246 ASP n 1 247 ARG n 1 248 ALA n 1 249 THR n 1 250 GLN n 1 251 PHE n 1 252 ILE n 1 253 LEU n 1 254 GLN n 1 255 GLY n 1 256 ILE n 1 257 ARG n 1 258 ALA n 1 259 THR n 1 260 PHE n 1 261 GLY n 1 262 TYR n 1 263 GLU n 1 264 TYR n 1 265 ASP n 1 266 ASN n 1 267 ARG n 1 268 GLU n 1 269 GLY n 1 270 ILE n 1 271 LEU n 1 272 LEU n 1 273 GLU n 1 274 LYS n 1 275 VAL n 1 276 LEU n 1 277 HIS n 1 278 ASN n 1 279 LEU n 1 280 ASP n 1 281 MSE n 1 282 PRO n 1 283 ILE n 1 284 GLN n 1 285 MSE n 1 286 ALA n 1 287 SER n 1 288 TYR n 1 289 GLU n 1 290 LEU n 1 291 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BT_4458 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain VPI-5482 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides thetaiotaomicron' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 226186 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q89ZB9_BACTN _struct_ref.pdbx_db_accession Q89ZB9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MYANKVKKIAAVHDLSGMGRVSLTVVIPILSSMGFQVCPLPTAVLSNHTQYPGFSFLDLTDEMPKIIAEWKKLEVQFDAI YTGYLGSPRQIQIVSDFIKDFRQPDSLIVADPVLGDNGRLYTNFDMEMVKEMRHLITKADVITPNLTELFYLLDEPYKAD STDEELKEYLRLLSDKGPQVVIITSVPVHDEPHKTSVYAYNRQGNRYWKVTCPYLPAHYPGTGDTFTSVITGSLMQGDSL PMALDRATQFILQGIRATFGYEYDNREGILLEKVLHNLDMPIQMASYELI ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3MBJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 291 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q89ZB9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 290 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 290 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3MBJ _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q89ZB9 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IMD non-polymer . IMIDAZOLE ? 'C3 H5 N2 1' 69.085 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 MRD non-polymer . '(4R)-2-METHYLPENTANE-2,4-DIOL' ? 'C6 H14 O2' 118.174 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3MBJ # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.86 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 57.03 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;35.00% 2-methyl-2,4-pentanediol, 0.20M lithium sulfate, 0.1M MES pH 6.0, Additive: 0.001M zinc chloride, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2009-07-09 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97916 1.0 3 0.97871 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.91837,0.97916,0.97871 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3MBJ _reflns.d_resolution_high 2.10 _reflns.d_resolution_low 29.591 _reflns.number_obs 22278 _reflns.pdbx_Rmerge_I_obs 0.137 _reflns.pdbx_netI_over_sigmaI 10.700 _reflns.pdbx_Rsym_value 0.137 _reflns.pdbx_redundancy 5.700 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate 28.253 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.10 2.15 ? 9346 ? 0.838 0.9 0.838 ? 5.70 ? 1645 100.00 1 1 2.15 2.21 ? 8993 ? 0.703 1.1 0.703 ? 5.70 ? 1582 100.00 2 1 2.21 2.28 ? 8763 ? 0.566 1.2 0.566 ? 5.70 ? 1537 100.00 3 1 2.28 2.35 ? 8541 ? 0.514 1.5 0.514 ? 5.70 ? 1504 100.00 4 1 2.35 2.42 ? 8407 ? 0.432 1.8 0.432 ? 5.70 ? 1478 100.00 5 1 2.42 2.51 ? 8099 ? 0.385 2.0 0.385 ? 5.70 ? 1415 100.00 6 1 2.51 2.60 ? 7698 ? 0.324 2.3 0.324 ? 5.70 ? 1351 100.00 7 1 2.60 2.71 ? 7538 ? 0.268 2.8 0.268 ? 5.70 ? 1321 100.00 8 1 2.71 2.83 ? 7214 ? 0.231 3.3 0.231 ? 5.70 ? 1265 100.00 9 1 2.83 2.97 ? 6893 ? 0.178 4.2 0.178 ? 5.70 ? 1209 100.00 10 1 2.97 3.13 ? 6616 ? 0.144 5.1 0.144 ? 5.70 ? 1160 100.00 11 1 3.13 3.32 ? 6197 ? 0.115 6.2 0.115 ? 5.70 ? 1090 100.00 12 1 3.32 3.55 ? 5788 ? 0.097 7.0 0.097 ? 5.70 ? 1015 100.00 13 1 3.55 3.83 ? 5454 ? 0.088 7.3 0.088 ? 5.70 ? 965 100.00 14 1 3.83 4.20 ? 4965 ? 0.079 7.8 0.079 ? 5.60 ? 884 100.00 15 1 4.20 4.70 ? 4445 ? 0.069 8.7 0.069 ? 5.60 ? 796 100.00 16 1 4.70 5.42 ? 3986 ? 0.072 8.5 0.072 ? 5.60 ? 716 100.00 17 1 5.42 6.64 ? 3351 ? 0.079 8.2 0.079 ? 5.50 ? 605 100.00 18 1 6.64 9.39 ? 2565 ? 0.062 9.3 0.062 ? 5.40 ? 474 100.00 19 1 9.39 29.59 ? 1355 ? 0.063 8.7 0.063 ? 5.10 ? 266 96.70 20 1 # _refine.entry_id 3MBJ _refine.ls_d_res_high 2.100 _refine.ls_d_res_low 29.591 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.950 _refine.ls_number_reflns_obs 22278 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. SULFATE IONS (SO4) AND 2-METHYL-2,4-PENTANEDIOL (MPD & MRD) MOLECULES FROM CRYSTALLIZATION ARE MODELED IN THE STRUCTURE. 5. AN IMIDAZOLE MOLECULE (IMD) FROM THE PROTEIN BUFFER IS MODELED IN THIS STRUCTURE. 6. ZINC IONS (ZN) AND A CHLORIDE ANION (CL) FROM THE CRYSTALLIZATION DROP ADDITIVE ARE MODELED IN THE STRUCTURE. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.173 _refine.ls_R_factor_R_work 0.171 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.210 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1137 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 23.496 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -1.790 _refine.aniso_B[2][2] -1.790 _refine.aniso_B[3][3] 2.680 _refine.aniso_B[1][2] -0.890 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.962 _refine.correlation_coeff_Fo_to_Fc_free 0.943 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.172 _refine.pdbx_overall_ESU_R_Free 0.154 _refine.overall_SU_ML 0.116 _refine.overall_SU_B 9.557 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 80.30 _refine.B_iso_min 3.05 _refine.occupancy_max 1.00 _refine.occupancy_min 0.37 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2257 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 51 _refine_hist.number_atoms_solvent 124 _refine_hist.number_atoms_total 2432 _refine_hist.d_res_high 2.100 _refine_hist.d_res_low 29.591 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 2410 0.017 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 1591 0.001 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 3290 1.615 2.000 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 3907 0.941 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 300 6.686 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 97 35.374 24.433 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 403 14.497 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 10 20.543 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 374 0.096 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 2644 0.007 0.021 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 466 0.001 0.020 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 1480 0.759 1.500 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 590 0.194 1.500 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 2414 1.396 2.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 930 2.488 3.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 876 3.698 4.500 ? ? # _refine_ls_shell.d_res_high 2.100 _refine_ls_shell.d_res_low 2.154 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 1545 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.249 _refine_ls_shell.R_factor_R_free 0.295 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 91 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1636 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3MBJ _struct.title ;Crystal structure of a putative phosphomethylpyrimidine kinase (BT_4458) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.10 A resolution (rhombohedral form) ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Putative phosphomethylpyrimidine kinase, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, Kinase, TRANSFERASE ; _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.entry_id 3MBJ # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 5 ? I N N 6 ? J N N 7 ? K N N 6 ? L N N 7 ? M N N 8 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 23 ? MSE A 34 ? SER A 22 MSE A 33 1 ? 12 HELX_P HELX_P2 2 GLU A 63 ? GLU A 75 ? GLU A 62 GLU A 74 1 ? 13 HELX_P HELX_P3 3 SER A 88 ? ARG A 103 ? SER A 87 ARG A 102 1 ? 16 HELX_P HELX_P4 4 ASP A 126 ? THR A 138 ? ASP A 125 THR A 137 1 ? 13 HELX_P HELX_P5 5 ASN A 146 ? ASP A 155 ? ASN A 145 ASP A 154 1 ? 10 HELX_P HELX_P6 6 THR A 163 ? ASP A 176 ? THR A 162 ASP A 175 1 ? 14 HELX_P HELX_P7 7 GLY A 222 ? GLN A 237 ? GLY A 221 GLN A 236 1 ? 16 HELX_P HELX_P8 8 SER A 240 ? GLY A 261 ? SER A 239 GLY A 260 1 ? 22 HELX_P HELX_P9 9 ASP A 265 ? GLY A 269 ? ASP A 264 GLY A 268 5 ? 5 HELX_P HELX_P10 10 LEU A 271 ? LEU A 276 ? LEU A 270 LEU A 275 1 ? 6 HELX_P HELX_P11 11 HIS A 277 ? MSE A 281 ? HIS A 276 MSE A 280 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 1 C ? ? ? 1_555 A MSE 2 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale2 covale both ? A MSE 2 C ? ? ? 1_555 A TYR 3 N ? ? A MSE 1 A TYR 2 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale3 covale both ? A GLY 18 C ? ? ? 1_555 A MSE 19 N ? ? A GLY 17 A MSE 18 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale4 covale both ? A MSE 19 C ? ? ? 1_555 A GLY 20 N ? ? A MSE 18 A GLY 19 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale5 covale both ? A SER 33 C ? ? ? 1_555 A MSE 34 N ? ? A SER 32 A MSE 33 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale6 covale both ? A MSE 34 C ? ? ? 1_555 A GLY 35 N ? ? A MSE 33 A GLY 34 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale7 covale both ? A GLU 63 C ? ? ? 1_555 A MSE 64 N ? ? A GLU 62 A MSE 63 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale8 covale both ? A MSE 64 C ? ? ? 1_555 A PRO 65 N ? ? A MSE 63 A PRO 64 1_555 ? ? ? ? ? ? ? 1.355 ? ? covale9 covale both ? A ASP 126 C ? ? ? 1_555 A MSE 127 N ? ? A ASP 125 A MSE 126 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale10 covale both ? A MSE 127 C ? ? ? 1_555 A GLU 128 N ? ? A MSE 126 A GLU 127 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale11 covale both ? A GLU 128 C ? ? ? 1_555 A MSE 129 N ? ? A GLU 127 A MSE 128 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale12 covale both ? A MSE 129 C ? ? ? 1_555 A VAL 130 N ? ? A MSE 128 A VAL 129 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale13 covale both ? A GLU 132 C ? ? ? 1_555 A MSE 133 N ? ? A GLU 131 A MSE 132 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale14 covale both ? A MSE 133 C ? ? ? 1_555 A ARG 134 N ? ? A MSE 132 A ARG 133 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale15 covale both ? A LEU 235 C ? ? ? 1_555 A MSE 236 N A ? A LEU 234 A MSE 235 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale16 covale both ? A LEU 235 C ? ? ? 1_555 A MSE 236 N B ? A LEU 234 A MSE 235 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale17 covale both ? A MSE 236 C A ? ? 1_555 A GLN 237 N ? ? A MSE 235 A GLN 236 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale18 covale both ? A MSE 236 C B ? ? 1_555 A GLN 237 N ? ? A MSE 235 A GLN 236 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale19 covale both ? A PRO 242 C ? ? ? 1_555 A MSE 243 N A ? A PRO 241 A MSE 242 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale20 covale both ? A PRO 242 C ? ? ? 1_555 A MSE 243 N B ? A PRO 241 A MSE 242 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale21 covale both ? A MSE 243 C A ? ? 1_555 A ALA 244 N ? ? A MSE 242 A ALA 243 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale22 covale both ? A MSE 243 C B ? ? 1_555 A ALA 244 N ? ? A MSE 242 A ALA 243 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale23 covale both ? A ASP 280 C ? ? ? 1_555 A MSE 281 N A ? A ASP 279 A MSE 280 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale24 covale both ? A ASP 280 C ? ? ? 1_555 A MSE 281 N B ? A ASP 279 A MSE 280 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale25 covale both ? A MSE 281 C A ? ? 1_555 A PRO 282 N ? ? A MSE 280 A PRO 281 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale26 covale both ? A MSE 281 C B ? ? 1_555 A PRO 282 N ? ? A MSE 280 A PRO 281 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale27 covale both ? A GLN 284 C ? ? ? 1_555 A MSE 285 N ? ? A GLN 283 A MSE 284 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale28 covale both ? A MSE 285 C ? ? ? 1_555 A ALA 286 N ? ? A MSE 284 A ALA 285 1_555 ? ? ? ? ? ? ? 1.325 ? ? metalc1 metalc ? ? A ASP 97 OD2 ? ? ? 1_555 C ZN . ZN ? ? A ASP 96 A ZN 292 1_555 ? ? ? ? ? ? ? 2.203 ? ? metalc2 metalc ? ? A HIS 277 ND1 ? ? ? 1_555 B ZN . ZN ? ? A HIS 276 A ZN 291 1_555 ? ? ? ? ? ? ? 2.072 ? ? metalc3 metalc ? ? A ASP 280 OD2 ? ? ? 1_555 B ZN . ZN ? ? A ASP 279 A ZN 291 1_555 ? ? ? ? ? ? ? 2.049 ? ? metalc4 metalc ? ? D ZN . ZN ? ? ? 1_555 M HOH . O ? ? A ZN 293 A HOH 317 1_555 ? ? ? ? ? ? ? 2.285 ? ? metalc5 metalc ? ? D ZN . ZN ? ? ? 1_555 M HOH . O ? ? A ZN 293 A HOH 332 1_555 ? ? ? ? ? ? ? 2.366 ? ? metalc6 metalc ? ? D ZN . ZN ? ? ? 1_555 M HOH . O ? ? A ZN 293 A HOH 337 1_555 ? ? ? ? ? ? ? 2.423 ? ? metalc7 metalc ? ? D ZN . ZN ? ? ? 1_555 M HOH . O ? ? A ZN 293 A HOH 354 1_555 ? ? ? ? ? ? ? 2.086 ? ? metalc8 metalc ? ? D ZN . ZN ? ? ? 1_555 M HOH . O ? ? A ZN 293 A HOH 398 1_555 ? ? ? ? ? ? ? 2.045 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 9 ? B ? 3 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 37 ? PRO A 40 ? GLN A 36 PRO A 39 A 2 LYS A 9 ? VAL A 13 ? LYS A 8 VAL A 12 A 3 ALA A 80 ? THR A 83 ? ALA A 79 THR A 82 A 4 LEU A 108 ? ALA A 111 ? LEU A 107 ALA A 110 A 5 VAL A 142 ? ILE A 143 ? VAL A 141 ILE A 142 A 6 VAL A 181 ? PRO A 188 ? VAL A 180 PRO A 187 A 7 LYS A 195 ? ASN A 202 ? LYS A 194 ASN A 201 A 8 ARG A 207 ? PRO A 214 ? ARG A 206 PRO A 213 A 9 GLU A 289 ? ILE A 291 ? GLU A 288 ILE A 290 B 1 LEU A 16 ? MSE A 19 ? LEU A 15 MSE A 18 B 2 ALA A 44 ? ASN A 48 ? ALA A 43 ASN A 47 B 3 PHE A 57 ? ASP A 59 ? PHE A 56 ASP A 58 C 1 GLY A 116 ? ASP A 117 ? GLY A 115 ASP A 116 C 2 ARG A 120 ? LEU A 121 ? ARG A 119 LEU A 120 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLN A 37 ? O GLN A 36 N ILE A 10 ? N ILE A 9 A 2 3 N ALA A 11 ? N ALA A 10 O TYR A 82 ? O TYR A 81 A 3 4 N ILE A 81 ? N ILE A 80 O VAL A 110 ? O VAL A 109 A 4 5 N ALA A 111 ? N ALA A 110 O VAL A 142 ? O VAL A 141 A 5 6 N ILE A 143 ? N ILE A 142 O ILE A 183 ? O ILE A 182 A 6 7 N VAL A 187 ? N VAL A 186 O SER A 197 ? O SER A 196 A 7 8 N THR A 196 ? N THR A 195 O CYS A 213 ? O CYS A 212 A 8 9 N TYR A 208 ? N TYR A 207 O ILE A 291 ? O ILE A 290 B 1 2 N LEU A 16 ? N LEU A 15 O LEU A 46 ? O LEU A 45 B 2 3 N VAL A 45 ? N VAL A 44 O LEU A 58 ? O LEU A 57 C 1 2 N ASP A 117 ? N ASP A 116 O ARG A 120 ? O ARG A 119 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 291 ? 4 'BINDING SITE FOR RESIDUE ZN A 291' AC2 Software A ZN 292 ? 4 'BINDING SITE FOR RESIDUE ZN A 292' AC3 Software A ZN 293 ? 5 'BINDING SITE FOR RESIDUE ZN A 293' AC4 Software A CL 294 ? 1 'BINDING SITE FOR RESIDUE CL A 294' AC5 Software A SO4 295 ? 10 'BINDING SITE FOR RESIDUE SO4 A 295' AC6 Software A SO4 296 ? 4 'BINDING SITE FOR RESIDUE SO4 A 296' AC7 Software A IMD 297 ? 6 'BINDING SITE FOR RESIDUE IMD A 297' AC8 Software A MPD 298 ? 4 'BINDING SITE FOR RESIDUE MPD A 298' AC9 Software A MRD 299 ? 2 'BINDING SITE FOR RESIDUE MRD A 299' BC1 Software A MPD 300 ? 5 'BINDING SITE FOR RESIDUE MPD A 300' BC2 Software A MRD 301 ? 5 'BINDING SITE FOR RESIDUE MRD A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HIS A 277 ? HIS A 276 . ? 1_555 ? 2 AC1 4 HIS A 277 ? HIS A 276 . ? 6_555 ? 3 AC1 4 ASP A 280 ? ASP A 279 . ? 1_555 ? 4 AC1 4 ASP A 280 ? ASP A 279 . ? 6_555 ? 5 AC2 4 ASP A 97 ? ASP A 96 . ? 1_555 ? 6 AC2 4 GLU A 132 ? GLU A 131 . ? 17_554 ? 7 AC2 4 HIS A 135 ? HIS A 134 . ? 17_554 ? 8 AC2 4 IMD H . ? IMD A 297 . ? 17_554 ? 9 AC3 5 HOH M . ? HOH A 317 . ? 1_555 ? 10 AC3 5 HOH M . ? HOH A 332 . ? 1_555 ? 11 AC3 5 HOH M . ? HOH A 337 . ? 1_555 ? 12 AC3 5 HOH M . ? HOH A 354 . ? 1_555 ? 13 AC3 5 HOH M . ? HOH A 398 . ? 1_555 ? 14 AC4 1 ALA A 4 ? ALA A 3 . ? 1_555 ? 15 AC5 10 HIS A 219 ? HIS A 218 . ? 1_555 ? 16 AC5 10 TYR A 220 ? TYR A 219 . ? 1_555 ? 17 AC5 10 PRO A 221 ? PRO A 220 . ? 1_555 ? 18 AC5 10 GLY A 222 ? GLY A 221 . ? 1_555 ? 19 AC5 10 THR A 223 ? THR A 222 . ? 1_555 ? 20 AC5 10 GLY A 224 ? GLY A 223 . ? 1_555 ? 21 AC5 10 HOH M . ? HOH A 328 . ? 1_555 ? 22 AC5 10 HOH M . ? HOH A 396 . ? 1_555 ? 23 AC5 10 HOH M . ? HOH A 398 . ? 1_555 ? 24 AC5 10 HOH M . ? HOH A 411 . ? 1_555 ? 25 AC6 4 ILE A 99 ? ILE A 98 . ? 1_555 ? 26 AC6 4 LYS A 100 ? LYS A 99 . ? 1_555 ? 27 AC6 4 ARG A 103 ? ARG A 102 . ? 1_555 ? 28 AC6 4 LYS A 139 ? LYS A 138 . ? 1_555 ? 29 AC7 6 GLN A 93 ? GLN A 92 . ? 17_554 ? 30 AC7 6 SER A 96 ? SER A 95 . ? 1_555 ? 31 AC7 6 ASP A 97 ? ASP A 96 . ? 17_554 ? 32 AC7 6 GLU A 132 ? GLU A 131 . ? 1_555 ? 33 AC7 6 HIS A 135 ? HIS A 134 . ? 1_555 ? 34 AC7 6 ZN C . ? ZN A 292 . ? 17_554 ? 35 AC8 4 GLU A 75 ? GLU A 74 . ? 1_555 ? 36 AC8 4 VAL A 76 ? VAL A 75 . ? 1_555 ? 37 AC8 4 PHE A 102 ? PHE A 101 . ? 1_555 ? 38 AC8 4 GLN A 104 ? GLN A 103 . ? 1_555 ? 39 AC9 2 GLN A 180 ? GLN A 179 . ? 1_555 ? 40 AC9 2 LEU A 241 ? LEU A 240 . ? 1_555 ? 41 BC1 5 ARG A 207 ? ARG A 206 . ? 1_555 ? 42 BC1 5 TRP A 209 ? TRP A 208 . ? 1_555 ? 43 BC1 5 PHE A 260 ? PHE A 259 . ? 3_555 ? 44 BC1 5 TYR A 262 ? TYR A 261 . ? 3_555 ? 45 BC1 5 GLU A 263 ? GLU A 262 . ? 3_555 ? 46 BC2 5 PRO A 217 ? PRO A 216 . ? 1_555 ? 47 BC2 5 PHE A 260 ? PHE A 259 . ? 1_555 ? 48 BC2 5 TYR A 288 ? TYR A 287 . ? 2_555 ? 49 BC2 5 GLU A 289 ? GLU A 288 . ? 2_555 ? 50 BC2 5 LEU A 290 ? LEU A 289 . ? 2_555 ? # _atom_sites.entry_id 3MBJ _atom_sites.fract_transf_matrix[1][1] 0.006187 _atom_sites.fract_transf_matrix[1][2] 0.003572 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007144 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013134 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S SE ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 TYR 3 2 2 TYR TYR A . n A 1 4 ALA 4 3 3 ALA ALA A . n A 1 5 ASN 5 4 4 ASN ASN A . n A 1 6 LYS 6 5 5 LYS LYS A . n A 1 7 VAL 7 6 6 VAL VAL A . n A 1 8 LYS 8 7 7 LYS LYS A . n A 1 9 LYS 9 8 8 LYS LYS A . n A 1 10 ILE 10 9 9 ILE ILE A . n A 1 11 ALA 11 10 10 ALA ALA A . n A 1 12 ALA 12 11 11 ALA ALA A . n A 1 13 VAL 13 12 12 VAL VAL A . n A 1 14 HIS 14 13 13 HIS HIS A . n A 1 15 ASP 15 14 14 ASP ASP A . n A 1 16 LEU 16 15 15 LEU LEU A . n A 1 17 SER 17 16 16 SER SER A . n A 1 18 GLY 18 17 17 GLY GLY A . n A 1 19 MSE 19 18 18 MSE MSE A . n A 1 20 GLY 20 19 19 GLY GLY A . n A 1 21 ARG 21 20 20 ARG ARG A . n A 1 22 VAL 22 21 21 VAL VAL A . n A 1 23 SER 23 22 22 SER SER A . n A 1 24 LEU 24 23 23 LEU LEU A . n A 1 25 THR 25 24 24 THR THR A . n A 1 26 VAL 26 25 25 VAL VAL A . n A 1 27 VAL 27 26 26 VAL VAL A . n A 1 28 ILE 28 27 27 ILE ILE A . n A 1 29 PRO 29 28 28 PRO PRO A . n A 1 30 ILE 30 29 29 ILE ILE A . n A 1 31 LEU 31 30 30 LEU LEU A . n A 1 32 SER 32 31 31 SER SER A . n A 1 33 SER 33 32 32 SER SER A . n A 1 34 MSE 34 33 33 MSE MSE A . n A 1 35 GLY 35 34 34 GLY GLY A . n A 1 36 PHE 36 35 35 PHE PHE A . n A 1 37 GLN 37 36 36 GLN GLN A . n A 1 38 VAL 38 37 37 VAL VAL A . n A 1 39 CYS 39 38 38 CYS CYS A . n A 1 40 PRO 40 39 39 PRO PRO A . n A 1 41 LEU 41 40 40 LEU LEU A . n A 1 42 PRO 42 41 41 PRO PRO A . n A 1 43 THR 43 42 42 THR THR A . n A 1 44 ALA 44 43 43 ALA ALA A . n A 1 45 VAL 45 44 44 VAL VAL A . n A 1 46 LEU 46 45 45 LEU LEU A . n A 1 47 SER 47 46 46 SER SER A . n A 1 48 ASN 48 47 47 ASN ASN A . n A 1 49 HIS 49 48 48 HIS HIS A . n A 1 50 THR 50 49 49 THR THR A . n A 1 51 GLN 51 50 50 GLN GLN A . n A 1 52 TYR 52 51 51 TYR TYR A . n A 1 53 PRO 53 52 52 PRO PRO A . n A 1 54 GLY 54 53 53 GLY GLY A . n A 1 55 PHE 55 54 54 PHE PHE A . n A 1 56 SER 56 55 55 SER SER A . n A 1 57 PHE 57 56 56 PHE PHE A . n A 1 58 LEU 58 57 57 LEU LEU A . n A 1 59 ASP 59 58 58 ASP ASP A . n A 1 60 LEU 60 59 59 LEU LEU A . n A 1 61 THR 61 60 60 THR THR A . n A 1 62 ASP 62 61 61 ASP ASP A . n A 1 63 GLU 63 62 62 GLU GLU A . n A 1 64 MSE 64 63 63 MSE MSE A . n A 1 65 PRO 65 64 64 PRO PRO A . n A 1 66 LYS 66 65 65 LYS LYS A . n A 1 67 ILE 67 66 66 ILE ILE A . n A 1 68 ILE 68 67 67 ILE ILE A . n A 1 69 ALA 69 68 68 ALA ALA A . n A 1 70 GLU 70 69 69 GLU GLU A . n A 1 71 TRP 71 70 70 TRP TRP A . n A 1 72 LYS 72 71 71 LYS LYS A . n A 1 73 LYS 73 72 72 LYS LYS A . n A 1 74 LEU 74 73 73 LEU LEU A . n A 1 75 GLU 75 74 74 GLU GLU A . n A 1 76 VAL 76 75 75 VAL VAL A . n A 1 77 GLN 77 76 76 GLN GLN A . n A 1 78 PHE 78 77 77 PHE PHE A . n A 1 79 ASP 79 78 78 ASP ASP A . n A 1 80 ALA 80 79 79 ALA ALA A . n A 1 81 ILE 81 80 80 ILE ILE A . n A 1 82 TYR 82 81 81 TYR TYR A . n A 1 83 THR 83 82 82 THR THR A . n A 1 84 GLY 84 83 83 GLY GLY A . n A 1 85 TYR 85 84 84 TYR TYR A . n A 1 86 LEU 86 85 85 LEU LEU A . n A 1 87 GLY 87 86 86 GLY GLY A . n A 1 88 SER 88 87 87 SER SER A . n A 1 89 PRO 89 88 88 PRO PRO A . n A 1 90 ARG 90 89 89 ARG ARG A . n A 1 91 GLN 91 90 90 GLN GLN A . n A 1 92 ILE 92 91 91 ILE ILE A . n A 1 93 GLN 93 92 92 GLN GLN A . n A 1 94 ILE 94 93 93 ILE ILE A . n A 1 95 VAL 95 94 94 VAL VAL A . n A 1 96 SER 96 95 95 SER SER A . n A 1 97 ASP 97 96 96 ASP ASP A . n A 1 98 PHE 98 97 97 PHE PHE A . n A 1 99 ILE 99 98 98 ILE ILE A . n A 1 100 LYS 100 99 99 LYS LYS A . n A 1 101 ASP 101 100 100 ASP ASP A . n A 1 102 PHE 102 101 101 PHE PHE A . n A 1 103 ARG 103 102 102 ARG ARG A . n A 1 104 GLN 104 103 103 GLN GLN A . n A 1 105 PRO 105 104 104 PRO PRO A . n A 1 106 ASP 106 105 105 ASP ASP A . n A 1 107 SER 107 106 106 SER SER A . n A 1 108 LEU 108 107 107 LEU LEU A . n A 1 109 ILE 109 108 108 ILE ILE A . n A 1 110 VAL 110 109 109 VAL VAL A . n A 1 111 ALA 111 110 110 ALA ALA A . n A 1 112 ASP 112 111 111 ASP ASP A . n A 1 113 PRO 113 112 112 PRO PRO A . n A 1 114 VAL 114 113 113 VAL VAL A . n A 1 115 LEU 115 114 114 LEU LEU A . n A 1 116 GLY 116 115 115 GLY GLY A . n A 1 117 ASP 117 116 116 ASP ASP A . n A 1 118 ASN 118 117 117 ASN ASN A . n A 1 119 GLY 119 118 118 GLY GLY A . n A 1 120 ARG 120 119 119 ARG ARG A . n A 1 121 LEU 121 120 120 LEU LEU A . n A 1 122 TYR 122 121 121 TYR TYR A . n A 1 123 THR 123 122 122 THR THR A . n A 1 124 ASN 124 123 123 ASN ASN A . n A 1 125 PHE 125 124 124 PHE PHE A . n A 1 126 ASP 126 125 125 ASP ASP A . n A 1 127 MSE 127 126 126 MSE MSE A . n A 1 128 GLU 128 127 127 GLU GLU A . n A 1 129 MSE 129 128 128 MSE MSE A . n A 1 130 VAL 130 129 129 VAL VAL A . n A 1 131 LYS 131 130 130 LYS LYS A . n A 1 132 GLU 132 131 131 GLU GLU A . n A 1 133 MSE 133 132 132 MSE MSE A . n A 1 134 ARG 134 133 133 ARG ARG A . n A 1 135 HIS 135 134 134 HIS HIS A . n A 1 136 LEU 136 135 135 LEU LEU A . n A 1 137 ILE 137 136 136 ILE ILE A . n A 1 138 THR 138 137 137 THR THR A . n A 1 139 LYS 139 138 138 LYS LYS A . n A 1 140 ALA 140 139 139 ALA ALA A . n A 1 141 ASP 141 140 140 ASP ASP A . n A 1 142 VAL 142 141 141 VAL VAL A . n A 1 143 ILE 143 142 142 ILE ILE A . n A 1 144 THR 144 143 143 THR THR A . n A 1 145 PRO 145 144 144 PRO PRO A . n A 1 146 ASN 146 145 145 ASN ASN A . n A 1 147 LEU 147 146 146 LEU LEU A . n A 1 148 THR 148 147 147 THR THR A . n A 1 149 GLU 149 148 148 GLU GLU A . n A 1 150 LEU 150 149 149 LEU LEU A . n A 1 151 PHE 151 150 150 PHE PHE A . n A 1 152 TYR 152 151 151 TYR TYR A . n A 1 153 LEU 153 152 152 LEU LEU A . n A 1 154 LEU 154 153 153 LEU LEU A . n A 1 155 ASP 155 154 154 ASP ASP A . n A 1 156 GLU 156 155 155 GLU GLU A . n A 1 157 PRO 157 156 156 PRO PRO A . n A 1 158 TYR 158 157 157 TYR TYR A . n A 1 159 LYS 159 158 158 LYS LYS A . n A 1 160 ALA 160 159 159 ALA ALA A . n A 1 161 ASP 161 160 160 ASP ASP A . n A 1 162 SER 162 161 161 SER SER A . n A 1 163 THR 163 162 162 THR THR A . n A 1 164 ASP 164 163 163 ASP ASP A . n A 1 165 GLU 165 164 164 GLU GLU A . n A 1 166 GLU 166 165 165 GLU GLU A . n A 1 167 LEU 167 166 166 LEU LEU A . n A 1 168 LYS 168 167 167 LYS LYS A . n A 1 169 GLU 169 168 168 GLU GLU A . n A 1 170 TYR 170 169 169 TYR TYR A . n A 1 171 LEU 171 170 170 LEU LEU A . n A 1 172 ARG 172 171 171 ARG ARG A . n A 1 173 LEU 173 172 172 LEU LEU A . n A 1 174 LEU 174 173 173 LEU LEU A . n A 1 175 SER 175 174 174 SER SER A . n A 1 176 ASP 176 175 175 ASP ASP A . n A 1 177 LYS 177 176 176 LYS LYS A . n A 1 178 GLY 178 177 177 GLY GLY A . n A 1 179 PRO 179 178 178 PRO PRO A . n A 1 180 GLN 180 179 179 GLN GLN A . n A 1 181 VAL 181 180 180 VAL VAL A . n A 1 182 VAL 182 181 181 VAL VAL A . n A 1 183 ILE 183 182 182 ILE ILE A . n A 1 184 ILE 184 183 183 ILE ILE A . n A 1 185 THR 185 184 184 THR THR A . n A 1 186 SER 186 185 185 SER SER A . n A 1 187 VAL 187 186 186 VAL VAL A . n A 1 188 PRO 188 187 187 PRO PRO A . n A 1 189 VAL 189 188 188 VAL VAL A . n A 1 190 HIS 190 189 189 HIS HIS A . n A 1 191 ASP 191 190 ? ? ? A . n A 1 192 GLU 192 191 ? ? ? A . n A 1 193 PRO 193 192 ? ? ? A . n A 1 194 HIS 194 193 193 HIS HIS A . n A 1 195 LYS 195 194 194 LYS LYS A . n A 1 196 THR 196 195 195 THR THR A . n A 1 197 SER 197 196 196 SER SER A . n A 1 198 VAL 198 197 197 VAL VAL A . n A 1 199 TYR 199 198 198 TYR TYR A . n A 1 200 ALA 200 199 199 ALA ALA A . n A 1 201 TYR 201 200 200 TYR TYR A . n A 1 202 ASN 202 201 201 ASN ASN A . n A 1 203 ARG 203 202 202 ARG ARG A . n A 1 204 GLN 204 203 203 GLN GLN A . n A 1 205 GLY 205 204 204 GLY GLY A . n A 1 206 ASN 206 205 205 ASN ASN A . n A 1 207 ARG 207 206 206 ARG ARG A . n A 1 208 TYR 208 207 207 TYR TYR A . n A 1 209 TRP 209 208 208 TRP TRP A . n A 1 210 LYS 210 209 209 LYS LYS A . n A 1 211 VAL 211 210 210 VAL VAL A . n A 1 212 THR 212 211 211 THR THR A . n A 1 213 CYS 213 212 212 CYS CYS A . n A 1 214 PRO 214 213 213 PRO PRO A . n A 1 215 TYR 215 214 214 TYR TYR A . n A 1 216 LEU 216 215 215 LEU LEU A . n A 1 217 PRO 217 216 216 PRO PRO A . n A 1 218 ALA 218 217 217 ALA ALA A . n A 1 219 HIS 219 218 218 HIS HIS A . n A 1 220 TYR 220 219 219 TYR TYR A . n A 1 221 PRO 221 220 220 PRO PRO A . n A 1 222 GLY 222 221 221 GLY GLY A . n A 1 223 THR 223 222 222 THR THR A . n A 1 224 GLY 224 223 223 GLY GLY A . n A 1 225 ASP 225 224 224 ASP ASP A . n A 1 226 THR 226 225 225 THR THR A . n A 1 227 PHE 227 226 226 PHE PHE A . n A 1 228 THR 228 227 227 THR THR A . n A 1 229 SER 229 228 228 SER SER A . n A 1 230 VAL 230 229 229 VAL VAL A . n A 1 231 ILE 231 230 230 ILE ILE A . n A 1 232 THR 232 231 231 THR THR A . n A 1 233 GLY 233 232 232 GLY GLY A . n A 1 234 SER 234 233 233 SER SER A . n A 1 235 LEU 235 234 234 LEU LEU A . n A 1 236 MSE 236 235 235 MSE MSE A . n A 1 237 GLN 237 236 236 GLN GLN A . n A 1 238 GLY 238 237 237 GLY GLY A . n A 1 239 ASP 239 238 238 ASP ASP A . n A 1 240 SER 240 239 239 SER SER A . n A 1 241 LEU 241 240 240 LEU LEU A . n A 1 242 PRO 242 241 241 PRO PRO A . n A 1 243 MSE 243 242 242 MSE MSE A . n A 1 244 ALA 244 243 243 ALA ALA A . n A 1 245 LEU 245 244 244 LEU LEU A . n A 1 246 ASP 246 245 245 ASP ASP A . n A 1 247 ARG 247 246 246 ARG ARG A . n A 1 248 ALA 248 247 247 ALA ALA A . n A 1 249 THR 249 248 248 THR THR A . n A 1 250 GLN 250 249 249 GLN GLN A . n A 1 251 PHE 251 250 250 PHE PHE A . n A 1 252 ILE 252 251 251 ILE ILE A . n A 1 253 LEU 253 252 252 LEU LEU A . n A 1 254 GLN 254 253 253 GLN GLN A . n A 1 255 GLY 255 254 254 GLY GLY A . n A 1 256 ILE 256 255 255 ILE ILE A . n A 1 257 ARG 257 256 256 ARG ARG A . n A 1 258 ALA 258 257 257 ALA ALA A . n A 1 259 THR 259 258 258 THR THR A . n A 1 260 PHE 260 259 259 PHE PHE A . n A 1 261 GLY 261 260 260 GLY GLY A . n A 1 262 TYR 262 261 261 TYR TYR A . n A 1 263 GLU 263 262 262 GLU GLU A . n A 1 264 TYR 264 263 263 TYR TYR A . n A 1 265 ASP 265 264 264 ASP ASP A . n A 1 266 ASN 266 265 265 ASN ASN A . n A 1 267 ARG 267 266 266 ARG ARG A . n A 1 268 GLU 268 267 267 GLU GLU A . n A 1 269 GLY 269 268 268 GLY GLY A . n A 1 270 ILE 270 269 269 ILE ILE A . n A 1 271 LEU 271 270 270 LEU LEU A . n A 1 272 LEU 272 271 271 LEU LEU A . n A 1 273 GLU 273 272 272 GLU GLU A . n A 1 274 LYS 274 273 273 LYS LYS A . n A 1 275 VAL 275 274 274 VAL VAL A . n A 1 276 LEU 276 275 275 LEU LEU A . n A 1 277 HIS 277 276 276 HIS HIS A . n A 1 278 ASN 278 277 277 ASN ASN A . n A 1 279 LEU 279 278 278 LEU LEU A . n A 1 280 ASP 280 279 279 ASP ASP A . n A 1 281 MSE 281 280 280 MSE MSE A . n A 1 282 PRO 282 281 281 PRO PRO A . n A 1 283 ILE 283 282 282 ILE ILE A . n A 1 284 GLN 284 283 283 GLN GLN A . n A 1 285 MSE 285 284 284 MSE MSE A . n A 1 286 ALA 286 285 285 ALA ALA A . n A 1 287 SER 287 286 286 SER SER A . n A 1 288 TYR 288 287 287 TYR TYR A . n A 1 289 GLU 289 288 288 GLU GLU A . n A 1 290 LEU 290 289 289 LEU LEU A . n A 1 291 ILE 291 290 290 ILE ILE A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 291 291 ZN ZN A . C 2 ZN 1 292 292 ZN ZN A . D 2 ZN 1 293 293 ZN ZN A . E 3 CL 1 294 294 CL CL A . F 4 SO4 1 295 295 SO4 SO4 A . G 4 SO4 1 296 296 SO4 SO4 A . H 5 IMD 1 297 297 IMD IMD A . I 6 MPD 1 298 298 MPD MPD A . J 7 MRD 1 299 299 MRD MRD A . K 6 MPD 1 300 300 MPD MPD A . L 7 MRD 1 301 301 MRD MRD A . M 8 HOH 1 302 302 HOH HOH A . M 8 HOH 2 303 303 HOH HOH A . M 8 HOH 3 304 304 HOH HOH A . M 8 HOH 4 305 305 HOH HOH A . M 8 HOH 5 306 306 HOH HOH A . M 8 HOH 6 307 307 HOH HOH A . M 8 HOH 7 308 308 HOH HOH A . M 8 HOH 8 309 309 HOH HOH A . M 8 HOH 9 310 310 HOH HOH A . M 8 HOH 10 311 311 HOH HOH A . M 8 HOH 11 312 312 HOH HOH A . M 8 HOH 12 313 313 HOH HOH A . M 8 HOH 13 314 314 HOH HOH A . M 8 HOH 14 315 315 HOH HOH A . M 8 HOH 15 316 316 HOH HOH A . M 8 HOH 16 317 317 HOH HOH A . M 8 HOH 17 318 318 HOH HOH A . M 8 HOH 18 319 319 HOH HOH A . M 8 HOH 19 320 320 HOH HOH A . M 8 HOH 20 321 321 HOH HOH A . M 8 HOH 21 322 322 HOH HOH A . M 8 HOH 22 323 323 HOH HOH A . M 8 HOH 23 324 324 HOH HOH A . M 8 HOH 24 325 325 HOH HOH A . M 8 HOH 25 326 326 HOH HOH A . M 8 HOH 26 327 327 HOH HOH A . M 8 HOH 27 328 328 HOH HOH A . M 8 HOH 28 329 329 HOH HOH A . M 8 HOH 29 330 330 HOH HOH A . M 8 HOH 30 331 331 HOH HOH A . M 8 HOH 31 332 332 HOH HOH A . M 8 HOH 32 333 333 HOH HOH A . M 8 HOH 33 334 334 HOH HOH A . M 8 HOH 34 335 335 HOH HOH A . M 8 HOH 35 336 336 HOH HOH A . M 8 HOH 36 337 337 HOH HOH A . M 8 HOH 37 338 338 HOH HOH A . M 8 HOH 38 339 339 HOH HOH A . M 8 HOH 39 340 340 HOH HOH A . M 8 HOH 40 341 341 HOH HOH A . M 8 HOH 41 342 342 HOH HOH A . M 8 HOH 42 343 343 HOH HOH A . M 8 HOH 43 344 344 HOH HOH A . M 8 HOH 44 345 345 HOH HOH A . M 8 HOH 45 346 346 HOH HOH A . M 8 HOH 46 347 347 HOH HOH A . M 8 HOH 47 348 348 HOH HOH A . M 8 HOH 48 349 349 HOH HOH A . M 8 HOH 49 350 350 HOH HOH A . M 8 HOH 50 351 351 HOH HOH A . M 8 HOH 51 352 352 HOH HOH A . M 8 HOH 52 353 353 HOH HOH A . M 8 HOH 53 354 354 HOH HOH A . M 8 HOH 54 355 355 HOH HOH A . M 8 HOH 55 356 356 HOH HOH A . M 8 HOH 56 357 357 HOH HOH A . M 8 HOH 57 358 358 HOH HOH A . M 8 HOH 58 359 359 HOH HOH A . M 8 HOH 59 360 360 HOH HOH A . M 8 HOH 60 361 361 HOH HOH A . M 8 HOH 61 362 362 HOH HOH A . M 8 HOH 62 363 363 HOH HOH A . M 8 HOH 63 364 364 HOH HOH A . M 8 HOH 64 365 365 HOH HOH A . M 8 HOH 65 366 366 HOH HOH A . M 8 HOH 66 367 367 HOH HOH A . M 8 HOH 67 368 368 HOH HOH A . M 8 HOH 68 369 369 HOH HOH A . M 8 HOH 69 370 370 HOH HOH A . M 8 HOH 70 371 371 HOH HOH A . M 8 HOH 71 372 372 HOH HOH A . M 8 HOH 72 373 373 HOH HOH A . M 8 HOH 73 374 374 HOH HOH A . M 8 HOH 74 375 375 HOH HOH A . M 8 HOH 75 376 376 HOH HOH A . M 8 HOH 76 377 377 HOH HOH A . M 8 HOH 77 378 378 HOH HOH A . M 8 HOH 78 379 379 HOH HOH A . M 8 HOH 79 380 380 HOH HOH A . M 8 HOH 80 381 381 HOH HOH A . M 8 HOH 81 382 382 HOH HOH A . M 8 HOH 82 383 383 HOH HOH A . M 8 HOH 83 384 384 HOH HOH A . M 8 HOH 84 385 385 HOH HOH A . M 8 HOH 85 386 386 HOH HOH A . M 8 HOH 86 387 387 HOH HOH A . M 8 HOH 87 388 388 HOH HOH A . M 8 HOH 88 389 389 HOH HOH A . M 8 HOH 89 390 390 HOH HOH A . M 8 HOH 90 391 391 HOH HOH A . M 8 HOH 91 392 392 HOH HOH A . M 8 HOH 92 393 393 HOH HOH A . M 8 HOH 93 394 394 HOH HOH A . M 8 HOH 94 395 395 HOH HOH A . M 8 HOH 95 396 396 HOH HOH A . M 8 HOH 96 397 397 HOH HOH A . M 8 HOH 97 398 398 HOH HOH A . M 8 HOH 98 399 399 HOH HOH A . M 8 HOH 99 400 400 HOH HOH A . M 8 HOH 100 401 401 HOH HOH A . M 8 HOH 101 402 402 HOH HOH A . M 8 HOH 102 403 403 HOH HOH A . M 8 HOH 103 404 404 HOH HOH A . M 8 HOH 104 405 405 HOH HOH A . M 8 HOH 105 406 406 HOH HOH A . M 8 HOH 106 407 407 HOH HOH A . M 8 HOH 107 408 408 HOH HOH A . M 8 HOH 108 409 409 HOH HOH A . M 8 HOH 109 410 410 HOH HOH A . M 8 HOH 110 411 411 HOH HOH A . M 8 HOH 111 412 412 HOH HOH A . M 8 HOH 112 413 413 HOH HOH A . M 8 HOH 113 414 414 HOH HOH A . M 8 HOH 114 415 415 HOH HOH A . M 8 HOH 115 416 416 HOH HOH A . M 8 HOH 116 417 417 HOH HOH A . M 8 HOH 117 418 418 HOH HOH A . M 8 HOH 118 419 419 HOH HOH A . M 8 HOH 119 420 420 HOH HOH A . M 8 HOH 120 421 421 HOH HOH A . M 8 HOH 121 422 422 HOH HOH A . M 8 HOH 122 423 423 HOH HOH A . M 8 HOH 123 424 424 HOH HOH A . M 8 HOH 124 425 425 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 19 A MSE 18 ? MET SELENOMETHIONINE 3 A MSE 34 A MSE 33 ? MET SELENOMETHIONINE 4 A MSE 64 A MSE 63 ? MET SELENOMETHIONINE 5 A MSE 127 A MSE 126 ? MET SELENOMETHIONINE 6 A MSE 129 A MSE 128 ? MET SELENOMETHIONINE 7 A MSE 133 A MSE 132 ? MET SELENOMETHIONINE 8 A MSE 236 A MSE 235 ? MET SELENOMETHIONINE 9 A MSE 243 A MSE 242 ? MET SELENOMETHIONINE 10 A MSE 281 A MSE 280 ? MET SELENOMETHIONINE 11 A MSE 285 A MSE 284 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 33700 ? 1 MORE -784 ? 1 'SSA (A^2)' 57120 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 5 'crystal symmetry operation' 5_555 x-y,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 6 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id ZN _pdbx_struct_special_symmetry.auth_seq_id 291 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id ZN _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 ND1 ? A HIS 277 ? A HIS 276 ? 1_555 ZN ? B ZN . ? A ZN 291 ? 1_555 OD2 ? A ASP 280 ? A ASP 279 ? 1_555 113.7 ? 2 O ? M HOH . ? A HOH 317 ? 1_555 ZN ? D ZN . ? A ZN 293 ? 1_555 O ? M HOH . ? A HOH 332 ? 1_555 96.6 ? 3 O ? M HOH . ? A HOH 317 ? 1_555 ZN ? D ZN . ? A ZN 293 ? 1_555 O ? M HOH . ? A HOH 337 ? 1_555 92.0 ? 4 O ? M HOH . ? A HOH 332 ? 1_555 ZN ? D ZN . ? A ZN 293 ? 1_555 O ? M HOH . ? A HOH 337 ? 1_555 131.9 ? 5 O ? M HOH . ? A HOH 317 ? 1_555 ZN ? D ZN . ? A ZN 293 ? 1_555 O ? M HOH . ? A HOH 354 ? 1_555 85.5 ? 6 O ? M HOH . ? A HOH 332 ? 1_555 ZN ? D ZN . ? A ZN 293 ? 1_555 O ? M HOH . ? A HOH 354 ? 1_555 111.7 ? 7 O ? M HOH . ? A HOH 337 ? 1_555 ZN ? D ZN . ? A ZN 293 ? 1_555 O ? M HOH . ? A HOH 354 ? 1_555 116.1 ? 8 O ? M HOH . ? A HOH 317 ? 1_555 ZN ? D ZN . ? A ZN 293 ? 1_555 O ? M HOH . ? A HOH 398 ? 1_555 169.1 ? 9 O ? M HOH . ? A HOH 332 ? 1_555 ZN ? D ZN . ? A ZN 293 ? 1_555 O ? M HOH . ? A HOH 398 ? 1_555 92.6 ? 10 O ? M HOH . ? A HOH 337 ? 1_555 ZN ? D ZN . ? A ZN 293 ? 1_555 O ? M HOH . ? A HOH 398 ? 1_555 86.1 ? 11 O ? M HOH . ? A HOH 354 ? 1_555 ZN ? D ZN . ? A ZN 293 ? 1_555 O ? M HOH . ? A HOH 398 ? 1_555 85.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-05-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2019-07-17 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_ref_seq_dif 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 24 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 25 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 26 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 27 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 28 5 'Structure model' '_pdbx_struct_conn_angle.value' 29 5 'Structure model' '_struct_conn.pdbx_dist_value' 30 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 31 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 32 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 33 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 34 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 35 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 36 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 37 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 38 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 39 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 40 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 41 5 'Structure model' '_struct_ref_seq_dif.details' 42 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 43 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 44 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -5.4084 _pdbx_refine_tls.origin_y 25.2169 _pdbx_refine_tls.origin_z -14.0687 _pdbx_refine_tls.T[1][1] 0.1340 _pdbx_refine_tls.T[2][2] 0.1053 _pdbx_refine_tls.T[3][3] 0.1035 _pdbx_refine_tls.T[1][2] 0.0026 _pdbx_refine_tls.T[1][3] -0.0168 _pdbx_refine_tls.T[2][3] 0.0719 _pdbx_refine_tls.L[1][1] 0.9364 _pdbx_refine_tls.L[2][2] 1.2428 _pdbx_refine_tls.L[3][3] 0.2168 _pdbx_refine_tls.L[1][2] 0.2012 _pdbx_refine_tls.L[1][3] -0.1087 _pdbx_refine_tls.L[2][3] 0.0075 _pdbx_refine_tls.S[1][1] -0.0417 _pdbx_refine_tls.S[2][2] 0.0428 _pdbx_refine_tls.S[3][3] -0.0011 _pdbx_refine_tls.S[1][2] 0.1772 _pdbx_refine_tls.S[1][3] 0.2666 _pdbx_refine_tls.S[2][3] 0.1118 _pdbx_refine_tls.S[2][1] -0.1791 _pdbx_refine_tls.S[3][1] -0.0522 _pdbx_refine_tls.S[3][2] -0.0065 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 290 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.5.0102 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 SCALA 3.2.5 5/04/2004 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 7 autoSHARP . ? ? ? ? phasing ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3MBJ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 20 ? ? CZ A ARG 20 ? ? NH1 A ARG 20 ? ? 123.33 120.30 3.03 0.50 N 2 1 CB A ASP 279 ? ? CG A ASP 279 ? ? OD1 A ASP 279 ? ? 126.73 118.30 8.43 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 22 ? ? 52.27 -132.84 2 1 LEU A 114 ? ? -136.59 -33.86 3 1 VAL A 188 ? ? -106.72 -99.74 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 119 ? CG ? A ARG 120 CG 2 1 Y 1 A ARG 119 ? CD ? A ARG 120 CD 3 1 Y 1 A ARG 119 ? NE ? A ARG 120 NE 4 1 Y 1 A ARG 119 ? CZ ? A ARG 120 CZ 5 1 Y 1 A ARG 119 ? NH1 ? A ARG 120 NH1 6 1 Y 1 A ARG 119 ? NH2 ? A ARG 120 NH2 7 1 Y 1 A ASN 123 ? CG ? A ASN 124 CG 8 1 Y 1 A ASN 123 ? OD1 ? A ASN 124 OD1 9 1 Y 1 A ASN 123 ? ND2 ? A ASN 124 ND2 10 1 Y 1 A LYS 130 ? CD ? A LYS 131 CD 11 1 Y 1 A LYS 130 ? CE ? A LYS 131 CE 12 1 Y 1 A LYS 130 ? NZ ? A LYS 131 NZ 13 1 Y 1 A LYS 158 ? CG ? A LYS 159 CG 14 1 Y 1 A LYS 158 ? CD ? A LYS 159 CD 15 1 Y 1 A LYS 158 ? CE ? A LYS 159 CE 16 1 Y 1 A LYS 158 ? NZ ? A LYS 159 NZ 17 1 Y 1 A GLU 168 ? CG ? A GLU 169 CG 18 1 Y 1 A GLU 168 ? CD ? A GLU 169 CD 19 1 Y 1 A GLU 168 ? OE1 ? A GLU 169 OE1 20 1 Y 1 A GLU 168 ? OE2 ? A GLU 169 OE2 21 1 Y 1 A HIS 189 ? CG ? A HIS 190 CG 22 1 Y 1 A HIS 189 ? ND1 ? A HIS 190 ND1 23 1 Y 1 A HIS 189 ? CD2 ? A HIS 190 CD2 24 1 Y 1 A HIS 189 ? CE1 ? A HIS 190 CE1 25 1 Y 1 A HIS 189 ? NE2 ? A HIS 190 NE2 26 1 Y 1 A HIS 193 ? CG ? A HIS 194 CG 27 1 Y 1 A HIS 193 ? ND1 ? A HIS 194 ND1 28 1 Y 1 A HIS 193 ? CD2 ? A HIS 194 CD2 29 1 Y 1 A HIS 193 ? CE1 ? A HIS 194 CE1 30 1 Y 1 A HIS 193 ? NE2 ? A HIS 194 NE2 31 1 Y 1 A MSE 284 ? CG ? A MSE 285 CG 32 1 Y 1 A MSE 284 ? SE ? A MSE 285 SE 33 1 Y 1 A MSE 284 ? CE ? A MSE 285 CE # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP 190 ? A ASP 191 2 1 Y 1 A GLU 191 ? A GLU 192 3 1 Y 1 A PRO 192 ? A PRO 193 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 'CHLORIDE ION' CL 4 'SULFATE ION' SO4 5 IMIDAZOLE IMD 6 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 7 '(4R)-2-METHYLPENTANE-2,4-DIOL' MRD 8 water HOH #