HEADER LYASE 25-MAR-10 3MBM TITLE CRYSTAL STRUCTURE OF 2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE TITLE 2 SYNTHASE FROM BURKHOLDERIA PSEUDOMALLEI WITH CYTOSINE AND FOL TITLE 3 FRAGMENT 717, IMIDAZO[2,1-B][1,3]THIAZOL-6-YLMETHANOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: MECPS, MECDP-SYNTHASE; COMPND 5 EC: 4.6.1.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI; SOURCE 3 ORGANISM_COMMON: PSEUDOMONAS PSEUDOMALLEI; SOURCE 4 ORGANISM_TAXID: 28450; SOURCE 5 STRAIN: 1710B; SOURCE 6 GENE: ISPF, MECS, BPSL2098; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: AVA0421 KEYWDS NIAID, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 2 SSGCID, ISPF, CYTOSINE, MEP PATHWAY, FRAGMENT-BASED DRUG DESIGN, KEYWDS 3 FBDD, FRAGMENTS OF LIFE, ISOPRENE BIOSYNTHESIS, LYASE, METAL-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 5 06-SEP-23 3MBM 1 REMARK SEQADV LINK REVDAT 4 08-NOV-17 3MBM 1 REMARK REVDAT 3 30-OCT-13 3MBM 1 REMARK REVDAT 2 13-JUL-11 3MBM 1 VERSN REVDAT 1 07-APR-10 3MBM 0 JRNL AUTH D.W.BEGLEY,R.C.HARTLEY,D.R.DAVIES,T.E.EDWARDS,J.T.LEONARD, JRNL AUTH 2 J.ABENDROTH,C.A.BURRIS,J.BHANDARI,P.J.MYLER,B.L.STAKER, JRNL AUTH 3 L.J.STEWART JRNL TITL LEVERAGING STRUCTURE DETERMINATION WITH FRAGMENT SCREENING JRNL TITL 2 FOR INFECTIOUS DISEASE DRUG TARGETS: MECP SYNTHASE FROM JRNL TITL 3 BURKHOLDERIA PSEUDOMALLEI. JRNL REF J STRUCT FUNCT GENOMICS V. 12 63 2011 JRNL REFN JRNL PMID 21359640 JRNL DOI 10.1007/S10969-011-9102-6 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.BAUGH,L.A.GALLAGHER,R.PATRAPUVICH,M.C.CLIFTON, REMARK 1 AUTH 2 A.S.GARDBERG,T.E.EDWARDS,B.ARMOUR,D.W.BEGLEY,S.H.DIETERICH, REMARK 1 AUTH 3 D.M.DRANOW,J.ABENDROTH,J.W.FAIRMAN,D.FOX,B.L.STAKER,I.PHAN, REMARK 1 AUTH 4 A.GILLESPIE,R.CHOI,S.NAKAZAWA-HEWITT,M.T.NGUYEN,A.NAPULI, REMARK 1 AUTH 5 L.BARRETT,G.W.BUCHKO,R.STACY,P.J.MYLER,L.J.STEWART,C.MANOIL, REMARK 1 AUTH 6 W.C.VAN VOORHIS REMARK 1 TITL COMBINING FUNCTIONAL AND STRUCTURAL GENOMICS TO SAMPLE THE REMARK 1 TITL 2 ESSENTIAL BURKHOLDERIA STRUCTOME. REMARK 1 REF PLOS ONE V. 8 53851 2013 REMARK 1 REFN ESSN 1932-6203 REMARK 1 PMID 23382856 REMARK 1 DOI 10.1371/JOURNAL.PONE.0053851 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 41626 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2090 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2958 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 156 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3417 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 241 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 6.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.768 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3553 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2358 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4818 ; 1.745 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5714 ; 1.078 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 463 ; 5.635 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;32.355 ;23.046 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 547 ;13.260 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;16.935 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 551 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4038 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 723 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2300 ; 0.591 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 954 ; 0.136 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3634 ; 1.028 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1253 ; 1.703 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1181 ; 2.608 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 20 REMARK 3 ORIGIN FOR THE GROUP (A): 11.6320 -34.0840 -12.3260 REMARK 3 T TENSOR REMARK 3 T11: 0.2330 T22: 0.1841 REMARK 3 T33: 0.1997 T12: 0.0086 REMARK 3 T13: -0.0269 T23: 0.0539 REMARK 3 L TENSOR REMARK 3 L11: 2.3234 L22: 2.5457 REMARK 3 L33: 1.8766 L12: 0.5184 REMARK 3 L13: 0.2994 L23: 1.0149 REMARK 3 S TENSOR REMARK 3 S11: 0.0107 S12: 0.2714 S13: 0.2664 REMARK 3 S21: -0.1362 S22: -0.0369 S23: 0.0160 REMARK 3 S31: -0.1045 S32: 0.0502 S33: 0.0262 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 57 REMARK 3 ORIGIN FOR THE GROUP (A): 8.1000 -30.9730 -8.0210 REMARK 3 T TENSOR REMARK 3 T11: 0.2627 T22: 0.1665 REMARK 3 T33: 0.2511 T12: 0.0054 REMARK 3 T13: 0.0108 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 2.5199 L22: 0.7678 REMARK 3 L33: 0.9625 L12: 0.3421 REMARK 3 L13: 0.5308 L23: 0.1875 REMARK 3 S TENSOR REMARK 3 S11: -0.0479 S12: 0.0899 S13: 0.4335 REMARK 3 S21: 0.0399 S22: -0.0505 S23: 0.1184 REMARK 3 S31: -0.1054 S32: -0.0640 S33: 0.0984 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 58 A 70 REMARK 3 ORIGIN FOR THE GROUP (A): 0.9930 -29.3100 -20.1710 REMARK 3 T TENSOR REMARK 3 T11: 0.3379 T22: 0.3834 REMARK 3 T33: 0.3175 T12: 0.0525 REMARK 3 T13: -0.0209 T23: 0.1273 REMARK 3 L TENSOR REMARK 3 L11: 5.7554 L22: 3.9700 REMARK 3 L33: 2.6350 L12: -0.1515 REMARK 3 L13: 0.2001 L23: 3.3221 REMARK 3 S TENSOR REMARK 3 S11: 0.2115 S12: 0.6613 S13: 0.8016 REMARK 3 S21: -0.4388 S22: -0.3792 S23: 0.0928 REMARK 3 S31: -0.3686 S32: -0.2770 S33: 0.1677 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 71 A 105 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9110 -39.5850 -11.0420 REMARK 3 T TENSOR REMARK 3 T11: 0.2550 T22: 0.2067 REMARK 3 T33: 0.1658 T12: -0.0030 REMARK 3 T13: 0.0141 T23: 0.0268 REMARK 3 L TENSOR REMARK 3 L11: 2.5495 L22: 0.9477 REMARK 3 L33: 1.1373 L12: 0.3320 REMARK 3 L13: 0.4939 L23: -0.1174 REMARK 3 S TENSOR REMARK 3 S11: 0.0401 S12: 0.2447 S13: 0.0873 REMARK 3 S21: -0.0288 S22: 0.0122 S23: -0.0060 REMARK 3 S31: 0.0814 S32: -0.1818 S33: -0.0523 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 106 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): 9.7600 -38.8370 1.4030 REMARK 3 T TENSOR REMARK 3 T11: 0.2667 T22: 0.1872 REMARK 3 T33: 0.1996 T12: 0.0087 REMARK 3 T13: 0.0096 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 5.2267 L22: 3.0963 REMARK 3 L33: 3.2695 L12: 1.7230 REMARK 3 L13: 1.0313 L23: 0.9206 REMARK 3 S TENSOR REMARK 3 S11: 0.1160 S12: -0.3980 S13: 0.0732 REMARK 3 S21: 0.2116 S22: -0.1042 S23: -0.1722 REMARK 3 S31: 0.0460 S32: 0.0771 S33: -0.0119 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 122 A 158 REMARK 3 ORIGIN FOR THE GROUP (A): 16.4120 -37.5090 -7.4360 REMARK 3 T TENSOR REMARK 3 T11: 0.2620 T22: 0.1469 REMARK 3 T33: 0.2077 T12: 0.0144 REMARK 3 T13: -0.0054 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 2.2557 L22: 1.5531 REMARK 3 L33: 1.1743 L12: 0.7209 REMARK 3 L13: 0.2883 L23: 0.1803 REMARK 3 S TENSOR REMARK 3 S11: 0.0129 S12: 0.1365 S13: 0.0671 REMARK 3 S21: 0.1228 S22: -0.0049 S23: -0.0697 REMARK 3 S31: 0.0094 S32: 0.0742 S33: -0.0080 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 26 REMARK 3 ORIGIN FOR THE GROUP (A): 24.2240 -36.1940 -26.9280 REMARK 3 T TENSOR REMARK 3 T11: 0.1889 T22: 0.5111 REMARK 3 T33: 0.1907 T12: -0.0122 REMARK 3 T13: 0.0345 T23: 0.0489 REMARK 3 L TENSOR REMARK 3 L11: 1.3700 L22: 2.7387 REMARK 3 L33: 1.8290 L12: 0.0662 REMARK 3 L13: 0.6226 L23: -0.6830 REMARK 3 S TENSOR REMARK 3 S11: -0.0822 S12: 0.6558 S13: 0.0917 REMARK 3 S21: -0.0328 S22: 0.0692 S23: -0.1233 REMARK 3 S31: -0.0961 S32: 0.3189 S33: 0.0130 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 27 B 38 REMARK 3 ORIGIN FOR THE GROUP (A): 24.2060 -23.8430 -32.8260 REMARK 3 T TENSOR REMARK 3 T11: 0.3196 T22: 0.6721 REMARK 3 T33: 0.3235 T12: -0.1357 REMARK 3 T13: -0.0253 T23: 0.3401 REMARK 3 L TENSOR REMARK 3 L11: 30.4144 L22: 17.2467 REMARK 3 L33: 8.8446 L12: -6.3050 REMARK 3 L13: 5.3224 L23: -5.0179 REMARK 3 S TENSOR REMARK 3 S11: 0.0746 S12: 2.3058 S13: 2.3438 REMARK 3 S21: -0.2516 S22: -0.5559 S23: -0.8854 REMARK 3 S31: 0.1162 S32: 0.8224 S33: 0.4813 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 39 B 56 REMARK 3 ORIGIN FOR THE GROUP (A): 26.2510 -42.7100 -26.8460 REMARK 3 T TENSOR REMARK 3 T11: 0.2157 T22: 1.7508 REMARK 3 T33: 0.2526 T12: -0.1653 REMARK 3 T13: 0.0813 T23: -0.4171 REMARK 3 L TENSOR REMARK 3 L11: 2.7890 L22: 9.7404 REMARK 3 L33: 2.2024 L12: -2.0693 REMARK 3 L13: 0.7317 L23: -2.5441 REMARK 3 S TENSOR REMARK 3 S11: -0.4281 S12: 1.7952 S13: -0.2949 REMARK 3 S21: -0.2949 S22: 0.6545 S23: -0.7650 REMARK 3 S31: 0.2133 S32: 0.0136 S33: -0.2264 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 57 B 66 REMARK 3 ORIGIN FOR THE GROUP (A): 35.6760 -44.0160 -27.9830 REMARK 3 T TENSOR REMARK 3 T11: 0.2786 T22: 0.5227 REMARK 3 T33: 0.3116 T12: 0.0394 REMARK 3 T13: 0.0427 T23: 0.0686 REMARK 3 L TENSOR REMARK 3 L11: 5.5005 L22: 1.6461 REMARK 3 L33: 24.4248 L12: -0.1111 REMARK 3 L13: 1.6139 L23: 6.6363 REMARK 3 S TENSOR REMARK 3 S11: -0.1471 S12: 0.2099 S13: 0.4389 REMARK 3 S21: -0.2640 S22: -0.0719 S23: -0.0703 REMARK 3 S31: -1.0948 S32: 0.2042 S33: 0.2190 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 73 B 93 REMARK 3 ORIGIN FOR THE GROUP (A): 26.3720 -48.4010 -33.7540 REMARK 3 T TENSOR REMARK 3 T11: 0.1739 T22: 2.0949 REMARK 3 T33: 0.4918 T12: 0.0093 REMARK 3 T13: 0.1141 T23: -0.9271 REMARK 3 L TENSOR REMARK 3 L11: 6.0210 L22: 5.6030 REMARK 3 L33: 1.4864 L12: -0.0026 REMARK 3 L13: 3.3645 L23: 0.4272 REMARK 3 S TENSOR REMARK 3 S11: 0.2091 S12: 3.3123 S13: -1.7127 REMARK 3 S21: -0.0105 S22: 0.1704 S23: -0.1855 REMARK 3 S31: 0.3167 S32: 1.3839 S33: -0.3795 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 94 B 158 REMARK 3 ORIGIN FOR THE GROUP (A): 16.5850 -36.1430 -25.7060 REMARK 3 T TENSOR REMARK 3 T11: 0.2301 T22: 0.4334 REMARK 3 T33: 0.1676 T12: -0.0035 REMARK 3 T13: 0.0142 T23: 0.0533 REMARK 3 L TENSOR REMARK 3 L11: 1.6188 L22: 1.6999 REMARK 3 L33: 1.4286 L12: 0.3055 REMARK 3 L13: 1.0120 L23: 0.3267 REMARK 3 S TENSOR REMARK 3 S11: -0.0498 S12: 0.6435 S13: 0.1491 REMARK 3 S21: -0.0502 S22: 0.0290 S23: -0.0054 REMARK 3 S31: -0.0283 S32: 0.3349 S33: 0.0208 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 18 REMARK 3 ORIGIN FOR THE GROUP (A): 27.0310 -41.5920 -7.2150 REMARK 3 T TENSOR REMARK 3 T11: 0.2869 T22: 0.2032 REMARK 3 T33: 0.2022 T12: 0.0198 REMARK 3 T13: -0.0134 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 7.0901 L22: 5.8433 REMARK 3 L33: 0.5010 L12: 4.5778 REMARK 3 L13: 0.9321 L23: 0.7494 REMARK 3 S TENSOR REMARK 3 S11: 0.1493 S12: 0.0623 S13: -0.1662 REMARK 3 S21: 0.1448 S22: -0.1198 S23: -0.2741 REMARK 3 S31: 0.0610 S32: 0.1161 S33: -0.0294 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 19 C 38 REMARK 3 ORIGIN FOR THE GROUP (A): 42.0140 -37.4270 -5.7030 REMARK 3 T TENSOR REMARK 3 T11: 0.2415 T22: 0.2423 REMARK 3 T33: 0.3678 T12: 0.0345 REMARK 3 T13: -0.0406 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 2.9438 L22: 5.8611 REMARK 3 L33: 2.6857 L12: -0.8596 REMARK 3 L13: 0.6492 L23: 1.6058 REMARK 3 S TENSOR REMARK 3 S11: 0.0123 S12: -0.1724 S13: 0.1197 REMARK 3 S21: 0.2234 S22: 0.0626 S23: -0.6427 REMARK 3 S31: -0.1285 S32: 0.2669 S33: -0.0748 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 39 C 58 REMARK 3 ORIGIN FOR THE GROUP (A): 25.7420 -45.5440 -4.1730 REMARK 3 T TENSOR REMARK 3 T11: 0.3154 T22: 0.1395 REMARK 3 T33: 0.2615 T12: 0.0498 REMARK 3 T13: -0.0326 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 3.8615 L22: 0.4756 REMARK 3 L33: 0.8862 L12: -0.7262 REMARK 3 L13: 0.7022 L23: -0.1249 REMARK 3 S TENSOR REMARK 3 S11: 0.0820 S12: -0.0180 S13: -0.0530 REMARK 3 S21: 0.1494 S22: -0.0164 S23: -0.0897 REMARK 3 S31: 0.0503 S32: 0.0594 S33: -0.0656 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 59 C 74 REMARK 3 ORIGIN FOR THE GROUP (A): 26.5980 -44.0410 4.4220 REMARK 3 T TENSOR REMARK 3 T11: 0.4013 T22: 0.3073 REMARK 3 T33: 0.2317 T12: 0.0554 REMARK 3 T13: -0.0676 T23: -0.0514 REMARK 3 L TENSOR REMARK 3 L11: 30.4599 L22: 7.6742 REMARK 3 L33: 1.0930 L12: -3.0624 REMARK 3 L13: 0.4187 L23: -2.3538 REMARK 3 S TENSOR REMARK 3 S11: -0.1703 S12: -1.7863 S13: 0.9550 REMARK 3 S21: 0.6961 S22: 0.2894 S23: -0.1478 REMARK 3 S31: -0.1920 S32: 0.1386 S33: -0.1191 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 75 C 113 REMARK 3 ORIGIN FOR THE GROUP (A): 31.7530 -48.5220 -8.5350 REMARK 3 T TENSOR REMARK 3 T11: 0.2740 T22: 0.2082 REMARK 3 T33: 0.2664 T12: 0.0649 REMARK 3 T13: -0.0076 T23: -0.0368 REMARK 3 L TENSOR REMARK 3 L11: 2.0735 L22: 1.1493 REMARK 3 L33: 1.0922 L12: -0.0940 REMARK 3 L13: 0.2915 L23: -0.5118 REMARK 3 S TENSOR REMARK 3 S11: 0.0372 S12: 0.2349 S13: -0.3015 REMARK 3 S21: -0.0046 S22: -0.0639 S23: -0.1906 REMARK 3 S31: 0.1257 S32: 0.1726 S33: 0.0268 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 114 C 158 REMARK 3 ORIGIN FOR THE GROUP (A): 31.1130 -43.8080 -13.6640 REMARK 3 T TENSOR REMARK 3 T11: 0.2434 T22: 0.2575 REMARK 3 T33: 0.2187 T12: 0.0436 REMARK 3 T13: 0.0128 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 2.3624 L22: 1.1718 REMARK 3 L33: 0.9253 L12: 0.0966 REMARK 3 L13: 0.3189 L23: -0.2592 REMARK 3 S TENSOR REMARK 3 S11: 0.0314 S12: 0.4461 S13: -0.1209 REMARK 3 S21: -0.0128 S22: -0.0571 S23: -0.1491 REMARK 3 S31: 0.0565 S32: 0.2237 S33: 0.0256 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3MBM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000058349. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41626 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.4 REMARK 200 DATA REDUNDANCY : 1.700 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.20 REMARK 200 R MERGE FOR SHELL (I) : 0.25600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.520 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 3IKE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 100 MM TRIS, 200 MM REMARK 280 NACL, 5 MM ZNCL2 WITH 34.4 MG/ML PROTEIN FOR 3 DAYS. CRYSTAL REMARK 280 SOAKED IN 25 MM CYTOSINE AND FRAGMENT 717 IN SAME BUFFER FOR 3 REMARK 280 WEEKS. VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K, PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.77150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.78450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.77150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.78450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 202 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLU A 159 REMARK 465 ALA A 160 REMARK 465 ALA A 161 REMARK 465 ALA A 162 REMARK 465 MET B -20 REMARK 465 ALA B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 MET B -12 REMARK 465 GLY B -11 REMARK 465 THR B -10 REMARK 465 LEU B -9 REMARK 465 GLU B -8 REMARK 465 ALA B -7 REMARK 465 GLN B -6 REMARK 465 THR B -5 REMARK 465 GLN B -4 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 HIS B 36 REMARK 465 PRO B 68 REMARK 465 ARG B 69 REMARK 465 PHE B 70 REMARK 465 GLU B 159 REMARK 465 ALA B 160 REMARK 465 ALA B 161 REMARK 465 ALA B 162 REMARK 465 MET C -20 REMARK 465 ALA C -19 REMARK 465 HIS C -18 REMARK 465 HIS C -17 REMARK 465 HIS C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 MET C -12 REMARK 465 GLY C -11 REMARK 465 THR C -10 REMARK 465 LEU C -9 REMARK 465 GLU C -8 REMARK 465 ALA C -7 REMARK 465 GLN C -6 REMARK 465 THR C -5 REMARK 465 GLN C -4 REMARK 465 GLY C -3 REMARK 465 PRO C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 THR C 66 REMARK 465 ASP C 67 REMARK 465 PRO C 68 REMARK 465 ARG C 69 REMARK 465 PHE C 70 REMARK 465 LYS C 71 REMARK 465 GLY C 72 REMARK 465 GLU C 159 REMARK 465 ALA C 160 REMARK 465 ALA C 161 REMARK 465 ALA C 162 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 64 OG REMARK 470 LYS A 71 CG CD CE NZ REMARK 470 THR B 66 OG1 CG2 REMARK 470 ASP B 67 CG OD1 OD2 REMARK 470 LYS B 71 CG CD CE NZ REMARK 470 LYS B 106 CG CD CE NZ REMARK 470 ARG B 158 CG CD NE CZ NH1 NH2 REMARK 470 HIS C 36 CG ND1 CD2 CE1 NE2 REMARK 470 ARG C 61 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 65 CG OD1 OD2 REMARK 470 LYS C 106 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 10 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 2 69.31 -102.18 REMARK 500 THR B 66 -71.07 -93.06 REMARK 500 ALA B 73 135.52 -29.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 163 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD2 REMARK 620 2 HIS A 12 NE2 102.5 REMARK 620 3 HIS A 44 ND1 101.9 116.6 REMARK 620 4 717 A 165 N2 127.5 105.2 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 163 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 10 OD2 REMARK 620 2 HIS B 12 NE2 104.4 REMARK 620 3 HIS B 44 ND1 95.6 123.8 REMARK 620 4 717 B 165 N2 123.9 114.9 94.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 164 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 10 OD2 REMARK 620 2 HIS C 12 NE2 104.3 REMARK 620 3 HIS C 44 ND1 102.5 119.4 REMARK 620 4 717 C 163 N2 121.8 107.9 102.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYT A 164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 717 A 165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 166 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYT B 164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 717 B 165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 717 C 163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 164 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYT C 165 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3IKE RELATED DB: PDB REMARK 900 STRUCTURE WITH CYTOSINE REMARK 900 RELATED ID: 3IKF RELATED DB: PDB REMARK 900 STRUCTURE WITH FOL 717 REMARK 900 RELATED ID: 3IEQ RELATED DB: PDB REMARK 900 STRUCTURE WITH CYTIDINE REMARK 900 RELATED ID: 3F0G RELATED DB: PDB REMARK 900 STRUCTURE WITH CMP REMARK 900 RELATED ID: 3F0E RELATED DB: PDB REMARK 900 APO STRUCTURE REMARK 900 RELATED ID: 3JVH RELATED DB: PDB REMARK 900 STRUCTURE WITH FOL 8395 REMARK 900 RELATED ID: 3K14 RELATED DB: PDB REMARK 900 STRUCTURE WITH FOL 535 REMARK 900 RELATED ID: 3KE1 RELATED DB: PDB REMARK 900 STRUCTURE WITH FRAGMENT-NUCLEOTIDE FUSION REMARK 900 RELATED ID: BUPSA.00122.A RELATED DB: TARGETDB DBREF 3MBM A 1 162 UNP Q63T71 ISPF_BURPS 1 162 DBREF 3MBM B 1 162 UNP Q63T71 ISPF_BURPS 1 162 DBREF 3MBM C 1 162 UNP Q63T71 ISPF_BURPS 1 162 SEQADV 3MBM MET A -20 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM ALA A -19 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM HIS A -18 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM HIS A -17 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM HIS A -16 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM HIS A -15 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM HIS A -14 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM HIS A -13 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM MET A -12 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM GLY A -11 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM THR A -10 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM LEU A -9 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM GLU A -8 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM ALA A -7 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM GLN A -6 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM THR A -5 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM GLN A -4 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM GLY A -3 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM PRO A -2 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM GLY A -1 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM SER A 0 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM MET B -20 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM ALA B -19 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM HIS B -18 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM HIS B -17 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM HIS B -16 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM HIS B -15 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM HIS B -14 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM HIS B -13 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM MET B -12 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM GLY B -11 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM THR B -10 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM LEU B -9 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM GLU B -8 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM ALA B -7 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM GLN B -6 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM THR B -5 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM GLN B -4 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM GLY B -3 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM PRO B -2 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM GLY B -1 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM SER B 0 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM MET C -20 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM ALA C -19 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM HIS C -18 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM HIS C -17 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM HIS C -16 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM HIS C -15 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM HIS C -14 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM HIS C -13 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM MET C -12 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM GLY C -11 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM THR C -10 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM LEU C -9 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM GLU C -8 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM ALA C -7 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM GLN C -6 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM THR C -5 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM GLN C -4 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM GLY C -3 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM PRO C -2 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM GLY C -1 UNP Q63T71 EXPRESSION TAG SEQADV 3MBM SER C 0 UNP Q63T71 EXPRESSION TAG SEQRES 1 A 183 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 183 ALA GLN THR GLN GLY PRO GLY SER MET ASP PHE ARG ILE SEQRES 3 A 183 GLY GLN GLY TYR ASP VAL HIS GLN LEU VAL PRO GLY ARG SEQRES 4 A 183 PRO LEU ILE ILE GLY GLY VAL THR ILE PRO TYR GLU ARG SEQRES 5 A 183 GLY LEU LEU GLY HIS SER ASP ALA ASP VAL LEU LEU HIS SEQRES 6 A 183 ALA ILE THR ASP ALA LEU PHE GLY ALA ALA ALA LEU GLY SEQRES 7 A 183 ASP ILE GLY ARG HIS PHE SER ASP THR ASP PRO ARG PHE SEQRES 8 A 183 LYS GLY ALA ASP SER ARG ALA LEU LEU ARG GLU CYS ALA SEQRES 9 A 183 SER ARG VAL ALA GLN ALA GLY PHE ALA ILE ARG ASN VAL SEQRES 10 A 183 ASP SER THR ILE ILE ALA GLN ALA PRO LYS LEU ALA PRO SEQRES 11 A 183 HIS ILE ASP ALA MET ARG ALA ASN ILE ALA ALA ASP LEU SEQRES 12 A 183 ASP LEU PRO LEU ASP ARG VAL ASN VAL LYS ALA LYS THR SEQRES 13 A 183 ASN GLU LYS LEU GLY TYR LEU GLY ARG GLY GLU GLY ILE SEQRES 14 A 183 GLU ALA GLN ALA ALA ALA LEU VAL VAL ARG GLU ALA ALA SEQRES 15 A 183 ALA SEQRES 1 B 183 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 B 183 ALA GLN THR GLN GLY PRO GLY SER MET ASP PHE ARG ILE SEQRES 3 B 183 GLY GLN GLY TYR ASP VAL HIS GLN LEU VAL PRO GLY ARG SEQRES 4 B 183 PRO LEU ILE ILE GLY GLY VAL THR ILE PRO TYR GLU ARG SEQRES 5 B 183 GLY LEU LEU GLY HIS SER ASP ALA ASP VAL LEU LEU HIS SEQRES 6 B 183 ALA ILE THR ASP ALA LEU PHE GLY ALA ALA ALA LEU GLY SEQRES 7 B 183 ASP ILE GLY ARG HIS PHE SER ASP THR ASP PRO ARG PHE SEQRES 8 B 183 LYS GLY ALA ASP SER ARG ALA LEU LEU ARG GLU CYS ALA SEQRES 9 B 183 SER ARG VAL ALA GLN ALA GLY PHE ALA ILE ARG ASN VAL SEQRES 10 B 183 ASP SER THR ILE ILE ALA GLN ALA PRO LYS LEU ALA PRO SEQRES 11 B 183 HIS ILE ASP ALA MET ARG ALA ASN ILE ALA ALA ASP LEU SEQRES 12 B 183 ASP LEU PRO LEU ASP ARG VAL ASN VAL LYS ALA LYS THR SEQRES 13 B 183 ASN GLU LYS LEU GLY TYR LEU GLY ARG GLY GLU GLY ILE SEQRES 14 B 183 GLU ALA GLN ALA ALA ALA LEU VAL VAL ARG GLU ALA ALA SEQRES 15 B 183 ALA SEQRES 1 C 183 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 C 183 ALA GLN THR GLN GLY PRO GLY SER MET ASP PHE ARG ILE SEQRES 3 C 183 GLY GLN GLY TYR ASP VAL HIS GLN LEU VAL PRO GLY ARG SEQRES 4 C 183 PRO LEU ILE ILE GLY GLY VAL THR ILE PRO TYR GLU ARG SEQRES 5 C 183 GLY LEU LEU GLY HIS SER ASP ALA ASP VAL LEU LEU HIS SEQRES 6 C 183 ALA ILE THR ASP ALA LEU PHE GLY ALA ALA ALA LEU GLY SEQRES 7 C 183 ASP ILE GLY ARG HIS PHE SER ASP THR ASP PRO ARG PHE SEQRES 8 C 183 LYS GLY ALA ASP SER ARG ALA LEU LEU ARG GLU CYS ALA SEQRES 9 C 183 SER ARG VAL ALA GLN ALA GLY PHE ALA ILE ARG ASN VAL SEQRES 10 C 183 ASP SER THR ILE ILE ALA GLN ALA PRO LYS LEU ALA PRO SEQRES 11 C 183 HIS ILE ASP ALA MET ARG ALA ASN ILE ALA ALA ASP LEU SEQRES 12 C 183 ASP LEU PRO LEU ASP ARG VAL ASN VAL LYS ALA LYS THR SEQRES 13 C 183 ASN GLU LYS LEU GLY TYR LEU GLY ARG GLY GLU GLY ILE SEQRES 14 C 183 GLU ALA GLN ALA ALA ALA LEU VAL VAL ARG GLU ALA ALA SEQRES 15 C 183 ALA HET ZN A 163 1 HET CYT A 164 8 HET 717 A 165 10 HET TRS A 166 16 HET ZN B 163 1 HET CYT B 164 8 HET 717 B 165 10 HET 717 C 163 10 HET ZN C 164 1 HET CYT C 165 8 HETNAM ZN ZINC ION HETNAM CYT 6-AMINOPYRIMIDIN-2(1H)-ONE HETNAM 717 IMIDAZO[2,1-B][1,3]THIAZOL-6-YLMETHANOL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN CYT CYTOSINE HETSYN TRS TRIS BUFFER FORMUL 4 ZN 3(ZN 2+) FORMUL 5 CYT 3(C4 H5 N3 O) FORMUL 6 717 3(C6 H6 N2 O S) FORMUL 7 TRS C4 H12 N O3 1+ FORMUL 14 HOH *241(H2 O) HELIX 1 1 ASP A 40 ALA A 54 1 15 HELIX 2 2 ASP A 58 PHE A 63 1 6 HELIX 3 3 ASP A 67 LYS A 71 5 5 HELIX 4 4 ASP A 74 ALA A 89 1 16 HELIX 5 5 LEU A 107 PRO A 109 5 3 HELIX 6 6 HIS A 110 ASP A 123 1 14 HELIX 7 7 PRO A 125 VAL A 129 5 5 HELIX 8 8 LEU A 139 ARG A 144 1 6 HELIX 9 9 ASP B 40 ALA B 54 1 15 HELIX 10 10 ASP B 58 PHE B 63 1 6 HELIX 11 11 ASP B 74 ALA B 89 1 16 HELIX 12 12 LEU B 107 PRO B 109 5 3 HELIX 13 13 HIS B 110 ASP B 123 1 14 HELIX 14 14 PRO B 125 VAL B 129 5 5 HELIX 15 15 LEU B 139 ARG B 144 1 6 HELIX 16 16 ASP C 40 ALA C 54 1 15 HELIX 17 17 ASP C 58 PHE C 63 1 6 HELIX 18 18 ASP C 74 ALA C 89 1 16 HELIX 19 19 LEU C 107 PRO C 109 5 3 HELIX 20 20 HIS C 110 ASP C 123 1 14 HELIX 21 21 PRO C 125 VAL C 129 5 5 HELIX 22 22 LEU C 139 ARG C 144 1 6 SHEET 1 A 5 ARG A 31 LEU A 33 0 SHEET 2 A 5 PHE A 3 PRO A 16 -1 N VAL A 15 O GLY A 32 SHEET 3 A 5 GLY A 147 VAL A 157 -1 O ALA A 150 N ASP A 10 SHEET 4 A 5 ALA A 92 ILE A 101 -1 N ILE A 101 O GLU A 149 SHEET 5 A 5 LYS A 132 LYS A 134 1 O LYS A 132 N ILE A 100 SHEET 1 B 2 LEU A 20 ILE A 22 0 SHEET 2 B 2 VAL A 25 ILE A 27 -1 O ILE A 27 N LEU A 20 SHEET 1 C 5 GLY B 32 LEU B 33 0 SHEET 2 C 5 ASP B 2 VAL B 15 -1 N VAL B 15 O GLY B 32 SHEET 3 C 5 GLY B 147 ARG B 158 -1 O ALA B 150 N ASP B 10 SHEET 4 C 5 ALA B 92 ILE B 101 -1 N ILE B 101 O GLU B 149 SHEET 5 C 5 LYS B 132 LYS B 134 1 O LYS B 134 N ILE B 100 SHEET 1 D 2 ILE B 21 ILE B 22 0 SHEET 2 D 2 VAL B 25 THR B 26 -1 O VAL B 25 N ILE B 22 SHEET 1 E 5 ARG C 31 LEU C 33 0 SHEET 2 E 5 ASP C 2 PRO C 16 -1 N VAL C 15 O GLY C 32 SHEET 3 E 5 GLY C 147 ARG C 158 -1 O ALA C 154 N GLY C 6 SHEET 4 E 5 ALA C 92 ILE C 101 -1 N ARG C 94 O LEU C 155 SHEET 5 E 5 LYS C 132 LYS C 134 1 O LYS C 132 N ILE C 100 SHEET 1 F 2 LEU C 20 ILE C 22 0 SHEET 2 F 2 VAL C 25 ILE C 27 -1 O ILE C 27 N LEU C 20 LINK OD2 ASP A 10 ZN ZN A 163 1555 1555 2.02 LINK NE2 HIS A 12 ZN ZN A 163 1555 1555 2.02 LINK ND1 HIS A 44 ZN ZN A 163 1555 1555 2.04 LINK ZN ZN A 163 N2 717 A 165 1555 1555 1.96 LINK OD2 ASP B 10 ZN ZN B 163 1555 1555 2.02 LINK NE2 HIS B 12 ZN ZN B 163 1555 1555 1.78 LINK ND1 HIS B 44 ZN ZN B 163 1555 1555 2.05 LINK ZN ZN B 163 N2 717 B 165 1555 1555 2.00 LINK OD2 ASP C 10 ZN ZN C 164 1555 1555 1.92 LINK NE2 HIS C 12 ZN ZN C 164 1555 1555 1.99 LINK ND1 HIS C 44 ZN ZN C 164 1555 1555 2.08 LINK N2 717 C 163 ZN ZN C 164 1555 1555 1.95 CISPEP 1 ALA A 104 PRO A 105 0 -6.26 CISPEP 2 ALA B 104 PRO B 105 0 -2.20 CISPEP 3 ALA C 104 PRO C 105 0 -1.07 SITE 1 AC1 4 ASP A 10 HIS A 12 HIS A 44 717 A 165 SITE 1 AC2 9 ALA A 102 PRO A 105 LYS A 106 LEU A 107 SITE 2 AC2 9 ALA A 108 LYS A 134 THR A 135 HOH A 198 SITE 3 AC2 9 HOH A 292 SITE 1 AC3 10 ASP A 10 HIS A 12 HIS A 44 PHE A 63 SITE 2 AC3 10 ASP A 65 ZN A 163 HOH A 257 HOH A 281 SITE 3 AC3 10 LYS B 134 GLU B 137 SITE 1 AC4 12 TYR A 9 GLU A 149 GLN A 151 HOH A 169 SITE 2 AC4 12 HOH A 251 HOH A 272 TYR B 9 GLU B 149 SITE 3 AC4 12 GLN B 151 TYR C 9 GLU C 149 GLN C 151 SITE 1 AC5 4 ASP B 10 HIS B 12 HIS B 44 717 B 165 SITE 1 AC6 9 ALA B 102 PRO B 105 LYS B 106 LEU B 107 SITE 2 AC6 9 ALA B 108 ALA B 133 LYS B 134 THR B 135 SITE 3 AC6 9 HOH B 198 SITE 1 AC7 7 ASP B 10 HIS B 12 HIS B 44 ZN B 163 SITE 2 AC7 7 HOH B 170 LYS C 134 GLU C 137 SITE 1 AC8 10 LYS A 134 GLU A 137 ASP C 10 HIS C 12 SITE 2 AC8 10 HIS C 44 ILE C 59 PHE C 63 ZN C 164 SITE 3 AC8 10 HOH C 191 HOH C 202 SITE 1 AC9 4 ASP C 10 HIS C 12 HIS C 44 717 C 163 SITE 1 BC1 8 ALA C 102 PRO C 105 LYS C 106 LEU C 107 SITE 2 BC1 8 ALA C 108 ALA C 133 LYS C 134 THR C 135 CRYST1 117.543 67.569 60.030 90.00 96.12 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008508 0.000000 0.000912 0.00000 SCALE2 0.000000 0.014800 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016754 0.00000