HEADER TRANSFERASE 25-MAR-10 3MBR TITLE CRYSTAL STRUCTURE OF THE GLUTAMINYL CYCLASE FROM XANTHOMONAS TITLE 2 CAMPESTRIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMINE CYCLOTRANSFERASE; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: UNP RESIDUES 22-264; COMPND 5 SYNONYM: GLUTAMINYL CYCLASE; COMPND 6 EC: 2.3.2.5; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS CAMPESTRIS; SOURCE 3 ORGANISM_TAXID: 340; SOURCE 4 STRAIN: PV. CAMPESTRIS; SOURCE 5 GENE: XCC2216; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS BETA-PROPELLER, CYCLOTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.-L.HUANG,Y.-R.WANG,T.-P.KO,C.-Y.CHIA,K.-F.HUANG,A.H.-J.WANG REVDAT 4 01-NOV-23 3MBR 1 REMARK REVDAT 3 10-NOV-21 3MBR 1 REMARK SEQADV LINK REVDAT 2 19-FEB-14 3MBR 1 JRNL VERSN REVDAT 1 30-JUN-10 3MBR 0 JRNL AUTH W.-L.HUANG,Y.-R.WANG,T.-P.KO,C.-Y.CHIA,K.-F.HUANG, JRNL AUTH 2 A.H.-J.WANG JRNL TITL CRYSTAL STRUCTURE AND FUNCTIONAL ANALYSIS OF THE GLUTAMINYL JRNL TITL 2 CYCLASE FROM XANTHOMONAS CAMPESTRIS JRNL REF J.MOL.BIOL. V. 401 374 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20558177 JRNL DOI 10.1016/J.JMB.2010.06.012 REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 49776 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2669 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.44 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.48 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3629 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 211 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1881 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 259 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.064 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.039 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.183 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1932 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2638 ; 2.301 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 235 ; 7.068 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;28.798 ;22.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 301 ;13.728 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;19.002 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 291 ; 0.184 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1499 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1176 ; 2.863 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1903 ; 4.103 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 756 ; 5.185 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 735 ; 7.385 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1932 ; 3.311 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 272 ; 8.931 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1882 ; 7.019 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 24 X 259 REMARK 3 ORIGIN FOR THE GROUP (A): 71.3023 -12.9690 37.9908 REMARK 3 T TENSOR REMARK 3 T11: 0.0247 T22: 0.0091 REMARK 3 T33: 0.0363 T12: -0.0013 REMARK 3 T13: 0.0059 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.7486 L22: 1.4114 REMARK 3 L33: 1.9383 L12: 0.2504 REMARK 3 L13: -0.2167 L23: -0.1920 REMARK 3 S TENSOR REMARK 3 S11: 0.0099 S12: 0.0112 S13: -0.0451 REMARK 3 S21: 0.0008 S22: -0.0136 S23: 0.0699 REMARK 3 S31: 0.0597 S32: -0.1239 S33: 0.0037 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MBR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058352. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-09; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 8.68 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY; NSRRC REMARK 200 BEAMLINE : BL-5A; BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0; 1.0 REMARK 200 MONOCHROMATOR : GRAPHITE; NULL REMARK 200 OPTICS : MIRRORS; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52509 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.440 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : 0.03400 REMARK 200 FOR THE DATA SET : 55.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.45400 REMARK 200 R SYM FOR SHELL (I) : 0.45400 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2FAW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM IMIDAZOLE, 0.8M SODIUM CITRATE, REMARK 280 PH 8.68, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.66500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.66500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.54400 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 47.66500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.66500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.54400 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 47.66500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 47.66500 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 32.54400 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 47.66500 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 47.66500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 32.54400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH X 355 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG X 22 REMARK 465 ASP X 23 REMARK 465 ALA X 260 REMARK 465 ALA X 261 REMARK 465 ALA X 262 REMARK 465 GLY X 263 REMARK 465 LYS X 264 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN X 105 O HOH X 352 1.70 REMARK 500 O PRO X 83 CD1 TYR X 86 1.91 REMARK 500 OG1 THR X 117 NH1 ARG X 119 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR X 86 CB THR X 190 6645 1.97 REMARK 500 O THR X 61 NH1 ARG X 168 6645 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU X 45 CD GLU X 45 OE1 -0.090 REMARK 500 SER X 57 CA SER X 57 CB 0.132 REMARK 500 SER X 64 CB SER X 64 OG -0.130 REMARK 500 TYR X 86 CB TYR X 86 CG -0.090 REMARK 500 TRP X 206 CE3 TRP X 206 CZ3 0.111 REMARK 500 ARG X 253 CZ ARG X 253 NH1 0.134 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER X 64 N - CA - CB ANGL. DEV. = -10.2 DEGREES REMARK 500 LEU X 155 CA - CB - CG ANGL. DEV. = -14.2 DEGREES REMARK 500 ARG X 192 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG X 195 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG X 195 NE - CZ - NH2 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG X 253 NE - CZ - NH1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG X 253 NE - CZ - NH2 ANGL. DEV. = -11.2 DEGREES REMARK 500 LEU X 257 CB - CG - CD2 ANGL. DEV. = -10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG X 63 111.20 168.69 REMARK 500 ALA X 89 -140.11 -122.61 REMARK 500 ARG X 95 -119.12 55.86 REMARK 500 TRP X 129 -62.26 -107.22 REMARK 500 ASP X 134 -151.70 -104.45 REMARK 500 ASP X 215 84.99 -155.98 REMARK 500 ASN X 228 8.72 -153.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN X 172 -11.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA X 300 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU X 47 O REMARK 620 2 GLU X 175 OE1 86.6 REMARK 620 3 LEU X 176 O 168.0 92.0 REMARK 620 4 GLU X 177 OE2 100.7 161.6 84.3 REMARK 620 5 ILE X 230 O 84.9 85.6 106.8 78.3 REMARK 620 6 HOH X 323 O 82.9 109.4 86.4 88.5 160.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA X 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FAW RELATED DB: PDB REMARK 900 PAPAYA GLUTAMINYL CYCLASE REMARK 900 RELATED ID: 2IWA RELATED DB: PDB REMARK 900 PAPAYA GLUTAMINYL CYCLASE DBREF 3MBR X 22 264 UNP Q8P8M4 Q8P8M4_XANCP 1 243 SEQADV 3MBR ALA X 89 UNP Q8P8M4 GLU 68 ENGINEERED MUTATION SEQRES 1 X 243 ARG ASP PRO VAL PRO THR GLN GLY TYR ARG VAL VAL LYS SEQRES 2 X 243 ARG TYR PRO HIS ASP THR THR ALA PHE THR GLU GLY LEU SEQRES 3 X 243 PHE TYR LEU ARG GLY HIS LEU TYR GLU SER THR GLY GLU SEQRES 4 X 243 THR GLY ARG SER SER VAL ARG LYS VAL ASP LEU GLU THR SEQRES 5 X 243 GLY ARG ILE LEU GLN ARG ALA GLU VAL PRO PRO PRO TYR SEQRES 6 X 243 PHE GLY ALA GLY ILE VAL ALA TRP ARG ASP ARG LEU ILE SEQRES 7 X 243 GLN LEU THR TRP ARG ASN HIS GLU GLY PHE VAL TYR ASP SEQRES 8 X 243 LEU ALA THR LEU THR PRO ARG ALA ARG PHE ARG TYR PRO SEQRES 9 X 243 GLY GLU GLY TRP ALA LEU THR SER ASP ASP SER HIS LEU SEQRES 10 X 243 TYR MET SER ASP GLY THR ALA VAL ILE ARG LYS LEU ASP SEQRES 11 X 243 PRO ASP THR LEU GLN GLN VAL GLY SER ILE LYS VAL THR SEQRES 12 X 243 ALA GLY GLY ARG PRO LEU ASP ASN LEU ASN GLU LEU GLU SEQRES 13 X 243 TRP VAL ASN GLY GLU LEU LEU ALA ASN VAL TRP LEU THR SEQRES 14 X 243 SER ARG ILE ALA ARG ILE ASP PRO ALA SER GLY LYS VAL SEQRES 15 X 243 VAL ALA TRP ILE ASP LEU GLN ALA LEU VAL PRO ASP ALA SEQRES 16 X 243 ASP ALA LEU THR ASP SER THR ASN ASP VAL LEU ASN GLY SEQRES 17 X 243 ILE ALA PHE ASP ALA GLU HIS ASP ARG LEU PHE VAL THR SEQRES 18 X 243 GLY LYS ARG TRP PRO MET LEU TYR GLU ILE ARG LEU THR SEQRES 19 X 243 PRO LEU PRO HIS ALA ALA ALA GLY LYS HET CA X 300 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ FORMUL 3 HOH *259(H2 O) HELIX 1 1 GLN X 210 VAL X 213 5 4 SHEET 1 A 4 TYR X 30 PRO X 37 0 SHEET 2 A 4 MET X 248 LEU X 254 -1 O LEU X 249 N TYR X 36 SHEET 3 A 4 ARG X 238 GLY X 243 -1 N VAL X 241 O TYR X 250 SHEET 4 A 4 LEU X 227 ASP X 233 -1 N ASP X 233 O ARG X 238 SHEET 1 B 4 THR X 44 LEU X 50 0 SHEET 2 B 4 HIS X 53 THR X 58 -1 O HIS X 53 N LEU X 50 SHEET 3 B 4 SER X 65 ASP X 70 -1 O VAL X 69 N LEU X 54 SHEET 4 B 4 ILE X 76 GLU X 81 -1 O LEU X 77 N LYS X 68 SHEET 1 C 4 GLY X 88 TRP X 94 0 SHEET 2 C 4 ARG X 97 THR X 102 -1 SHEET 3 C 4 GLU X 107 ASP X 112 -1 O TYR X 111 N LEU X 98 SHEET 4 C 4 THR X 117 ARG X 123 -1 O ARG X 119 N VAL X 110 SHEET 1 D 4 ALA X 130 SER X 133 0 SHEET 2 D 4 LEU X 138 SER X 141 -1 O TYR X 139 N THR X 132 SHEET 3 D 4 VAL X 146 LEU X 150 -1 O LEU X 150 N LEU X 138 SHEET 4 D 4 GLN X 157 LYS X 162 -1 O VAL X 158 N LYS X 149 SHEET 1 E 2 THR X 164 ALA X 165 0 SHEET 2 E 2 ARG X 168 PRO X 169 -1 O ARG X 168 N ALA X 165 SHEET 1 F 4 LEU X 173 VAL X 179 0 SHEET 2 F 4 GLU X 182 VAL X 187 -1 O LEU X 184 N GLU X 177 SHEET 3 F 4 ARG X 192 ILE X 196 -1 O ILE X 196 N LEU X 183 SHEET 4 F 4 VAL X 203 ASP X 208 -1 O VAL X 204 N ARG X 195 LINK O LEU X 47 CA CA X 300 1555 1555 2.30 LINK OE1 GLU X 175 CA CA X 300 1555 1555 2.49 LINK O LEU X 176 CA CA X 300 1555 1555 2.52 LINK OE2 GLU X 177 CA CA X 300 1555 1555 2.44 LINK O ILE X 230 CA CA X 300 1555 1555 2.32 LINK CA CA X 300 O HOH X 323 1555 1555 2.43 CISPEP 1 PRO X 84 PRO X 85 0 2.97 SITE 1 AC1 6 LEU X 47 GLU X 175 LEU X 176 GLU X 177 SITE 2 AC1 6 ILE X 230 HOH X 323 CRYST1 95.330 95.330 65.088 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010490 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010490 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015364 0.00000