data_3MBU # _entry.id 3MBU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3MBU pdb_00003mbu 10.2210/pdb3mbu/pdb NDB NA0518 ? ? RCSB RCSB058355 ? ? WWPDB D_1000058355 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-03-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 2 0 2023-11-15 5 'Structure model' 2 1 2024-10-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 3 'Structure model' 'Structure summary' 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' audit_author 2 3 'Structure model' software 3 4 'Structure model' atom_site 4 4 'Structure model' atom_site_anisotrop 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond 7 4 'Structure model' database_2 8 4 'Structure model' struct_conn 9 4 'Structure model' struct_site 10 5 'Structure model' pdbx_entry_details 11 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_audit_author.name' 2 4 'Structure model' '_atom_site.auth_atom_id' 3 4 'Structure model' '_atom_site.label_atom_id' 4 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 5 4 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 6 4 'Structure model' '_database_2.pdbx_DOI' 7 4 'Structure model' '_database_2.pdbx_database_accession' 8 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 9 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 10 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 11 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 12 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 13 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3MBU _pdbx_database_status.recvd_initial_deposition_date 2010-03-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3MBS _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yeh, J.I.' 1 ? 'Pohl, E.' 2 ? 'Truan, D.' 3 ? 'He, W.' 4 ? 'Sheldrick, G.M.' 5 ? 'Du, S.' 6 ? 'Achim, C.' 7 ? # _citation.id primary _citation.title 'The crystal structure of non-modified and bipyridine-modified PNA duplexes.' _citation.journal_abbrev Chemistry _citation.journal_volume 16 _citation.page_first 11867 _citation.page_last 11875 _citation.year 2010 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 0947-6539 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20859960 _citation.pdbx_database_id_DOI 10.1002/chem.201000392 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yeh, J.I.' 1 ? primary 'Pohl, E.' 2 ? primary 'Truan, D.' 3 ? primary 'He, W.' 4 ? primary 'Sheldrick, G.M.' 5 ? primary 'Du, S.' 6 ? primary 'Achim, C.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn Bipyridine-PNA 2620.625 4 ? ? ? ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 3 non-polymer syn R-1,2-PROPANEDIOL 76.094 3 ? ? ? ? 4 non-polymer syn 'CARBONATE ION' 60.009 2 ? ? ? ? 5 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 6 non-polymer syn S-1,2-PROPANEDIOL 76.094 2 ? ? ? ? 7 water nat water 18.015 232 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(GPN)(GPN)(CPN)(APN)(KPN)(TPN)(GPN)(CPN)(CPN)K' _entity_poly.pdbx_seq_one_letter_code_can XXXXXXXXXK _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 R-1,2-PROPANEDIOL PGR 4 'CARBONATE ION' CO3 5 GLYCEROL GOL 6 S-1,2-PROPANEDIOL PGO 7 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GPN n 1 2 GPN n 1 3 CPN n 1 4 APN n 1 5 KPN n 1 6 TPN n 1 7 GPN n 1 8 CPN n 1 9 CPN n 1 10 LYS n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Chemically synthesised' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight APN peptide-like . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-ADENINE ? 'C11 H16 N7 O3 1' 294.290 CO3 non-polymer . 'CARBONATE ION' ? 'C O3 -2' 60.009 CPN peptide-like . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-CYTOSINE ? 'C10 H16 N5 O4 1' 270.265 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 GPN peptide-like . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-GUANINE ? 'C11 H16 N7 O4 1' 310.289 HOH non-polymer . WATER ? 'H2 O' 18.015 KPN peptide-like . "N-(2-aminoethyl)-N-(2,2'-bipyridin-5-ylacetyl)glycine" ? 'C16 H18 N4 O3' 314.339 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PGO non-polymer . S-1,2-PROPANEDIOL ? 'C3 H8 O2' 76.094 PGR non-polymer . R-1,2-PROPANEDIOL ? 'C3 H8 O2' 76.094 TPN peptide-like . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-THYMINE ? 'C11 H17 N4 O5 1' 285.276 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GPN 1 1001 1001 GPN GPN A . n A 1 2 GPN 2 1002 1002 GPN GPN A . n A 1 3 CPN 3 1003 1003 CPN CPN A . n A 1 4 APN 4 1004 1004 APN APN A . n A 1 5 KPN 5 1005 1005 KPN KPN A . n A 1 6 TPN 6 1006 1006 TPN TPN A . n A 1 7 GPN 7 1007 1007 GPN GPN A . n A 1 8 CPN 8 1008 1008 CPN CPN A . n A 1 9 CPN 9 1009 1009 CPN CPN A . n A 1 10 LYS 10 1010 1010 LYS LYS A . n B 1 1 GPN 1 2001 2001 GPN GPN B . n B 1 2 GPN 2 2002 2002 GPN GPN B . n B 1 3 CPN 3 2003 2003 CPN CPN B . n B 1 4 APN 4 2004 2004 APN APN B . n B 1 5 KPN 5 2005 2005 KPN KPN B . n B 1 6 TPN 6 2006 2006 TPN TPN B . n B 1 7 GPN 7 2007 2007 GPN GPN B . n B 1 8 CPN 8 2008 2008 CPN CPN B . n B 1 9 CPN 9 2009 2009 CPN CPN B . n B 1 10 LYS 10 2010 2010 LYS LYS B . n C 1 1 GPN 1 3001 3001 GPN GPN C . n C 1 2 GPN 2 3002 3002 GPN GPN C . n C 1 3 CPN 3 3003 3003 CPN CPN C . n C 1 4 APN 4 3004 3004 APN APN C . n C 1 5 KPN 5 3005 3005 KPN KPN C . n C 1 6 TPN 6 3006 3006 TPN TPN C . n C 1 7 GPN 7 3007 3007 GPN GPN C . n C 1 8 CPN 8 3008 3008 CPN CPN C . n C 1 9 CPN 9 3009 3009 CPN CPN C . n C 1 10 LYS 10 3010 3010 LYS LYS C . n D 1 1 GPN 1 4001 4001 GPN GPN D . n D 1 2 GPN 2 4002 4002 GPN GPN D . n D 1 3 CPN 3 4003 4003 CPN CPN D . n D 1 4 APN 4 4004 4004 APN APN D . n D 1 5 KPN 5 4005 4005 KPN KPN D . n D 1 6 TPN 6 4006 4006 TPN TPN D . n D 1 7 GPN 7 4007 4007 GPN GPN D . n D 1 8 CPN 8 4008 4008 CPN CPN D . n D 1 9 CPN 9 4009 4009 CPN CPN D . n D 1 10 LYS 10 4010 4010 LYS LYS D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 EDO 1 5003 5003 EDO EDO A . F 3 PGR 1 5009 5009 PGR PGR A . G 3 PGR 1 5004 5004 PGR PGR B . H 3 PGR 1 5005 5005 PGR PGR B . I 4 CO3 1 5002 5002 CO3 CO3 C . J 5 GOL 1 5006 5006 GOL GOL C . K 6 PGO 1 5007 5007 PGO PGO C . L 4 CO3 1 5001 5001 CO3 CO3 D . M 6 PGO 1 5008 5008 PGO PGO D . N 5 GOL 1 5010 5010 GOL GOL D . O 7 HOH 1 6001 6001 HOH HOH A . O 7 HOH 2 6004 6004 HOH HOH A . O 7 HOH 3 6005 6005 HOH HOH A . O 7 HOH 4 6016 6016 HOH HOH A . O 7 HOH 5 6018 6018 HOH HOH A . O 7 HOH 6 6021 6021 HOH HOH A . O 7 HOH 7 6029 6029 HOH HOH A . O 7 HOH 8 6033 6033 HOH HOH A . O 7 HOH 9 6034 6034 HOH HOH A . O 7 HOH 10 6036 6036 HOH HOH A . O 7 HOH 11 6037 6037 HOH HOH A . O 7 HOH 12 6040 6040 HOH HOH A . O 7 HOH 13 6042 6042 HOH HOH A . O 7 HOH 14 6044 6044 HOH HOH A . O 7 HOH 15 6045 6045 HOH HOH A . O 7 HOH 16 6046 6046 HOH HOH A . O 7 HOH 17 6057 6057 HOH HOH A . O 7 HOH 18 6063 6063 HOH HOH A . O 7 HOH 19 6067 6067 HOH HOH A . O 7 HOH 20 6069 6069 HOH HOH A . O 7 HOH 21 6073 6073 HOH HOH A . O 7 HOH 22 6084 6084 HOH HOH A . O 7 HOH 23 6095 6095 HOH HOH A . O 7 HOH 24 6098 6098 HOH HOH A . O 7 HOH 25 6101 6101 HOH HOH A . O 7 HOH 26 6102 6102 HOH HOH A . O 7 HOH 27 6103 6103 HOH HOH A . O 7 HOH 28 6104 6104 HOH HOH A . O 7 HOH 29 6105 6105 HOH HOH A . O 7 HOH 30 6106 6106 HOH HOH A . O 7 HOH 31 6108 6108 HOH HOH A . O 7 HOH 32 6112 6112 HOH HOH A . O 7 HOH 33 6117 6117 HOH HOH A . O 7 HOH 34 6121 6121 HOH HOH A . O 7 HOH 35 6124 6124 HOH HOH A . O 7 HOH 36 6136 6136 HOH HOH A . O 7 HOH 37 6141 6141 HOH HOH A . O 7 HOH 38 6143 6143 HOH HOH A . O 7 HOH 39 6146 6146 HOH HOH A . O 7 HOH 40 6147 6147 HOH HOH A . O 7 HOH 41 6153 6153 HOH HOH A . O 7 HOH 42 6155 6155 HOH HOH A . O 7 HOH 43 6157 6157 HOH HOH A . O 7 HOH 44 6161 6161 HOH HOH A . O 7 HOH 45 6164 6164 HOH HOH A . O 7 HOH 46 6165 6165 HOH HOH A . O 7 HOH 47 6169 6169 HOH HOH A . O 7 HOH 48 6194 6194 HOH HOH A . O 7 HOH 49 6196 6196 HOH HOH A . O 7 HOH 50 6197 6197 HOH HOH A . O 7 HOH 51 6212 6212 HOH HOH A . O 7 HOH 52 6223 6223 HOH HOH A . O 7 HOH 53 6228 6228 HOH HOH A . O 7 HOH 54 6234 6234 HOH HOH A . O 7 HOH 55 6235 6235 HOH HOH A . O 7 HOH 56 6236 6236 HOH HOH A . O 7 HOH 57 6241 6241 HOH HOH A . O 7 HOH 58 6246 6246 HOH HOH A . O 7 HOH 59 6247 6247 HOH HOH A . O 7 HOH 60 6248 6248 HOH HOH A . O 7 HOH 61 6249 6249 HOH HOH A . O 7 HOH 62 6250 6250 HOH HOH A . P 7 HOH 1 6007 6007 HOH HOH B . P 7 HOH 2 6008 6008 HOH HOH B . P 7 HOH 3 6009 6009 HOH HOH B . P 7 HOH 4 6015 6015 HOH HOH B . P 7 HOH 5 6019 6019 HOH HOH B . P 7 HOH 6 6024 6024 HOH HOH B . P 7 HOH 7 6027 6027 HOH HOH B . P 7 HOH 8 6028 6028 HOH HOH B . P 7 HOH 9 6031 6031 HOH HOH B . P 7 HOH 10 6035 6035 HOH HOH B . P 7 HOH 11 6039 6039 HOH HOH B . P 7 HOH 12 6041 6041 HOH HOH B . P 7 HOH 13 6047 6047 HOH HOH B . P 7 HOH 14 6048 6048 HOH HOH B . P 7 HOH 15 6053 6053 HOH HOH B . P 7 HOH 16 6065 6065 HOH HOH B . P 7 HOH 17 6066 6066 HOH HOH B . P 7 HOH 18 6071 6071 HOH HOH B . P 7 HOH 19 6076 6076 HOH HOH B . P 7 HOH 20 6077 6077 HOH HOH B . P 7 HOH 21 6087 6087 HOH HOH B . P 7 HOH 22 6099 6099 HOH HOH B . P 7 HOH 23 6110 6110 HOH HOH B . P 7 HOH 24 6113 6113 HOH HOH B . P 7 HOH 25 6125 6125 HOH HOH B . P 7 HOH 26 6130 6130 HOH HOH B . P 7 HOH 27 6133 6133 HOH HOH B . P 7 HOH 28 6135 6135 HOH HOH B . P 7 HOH 29 6139 6139 HOH HOH B . P 7 HOH 30 6144 6144 HOH HOH B . P 7 HOH 31 6145 6145 HOH HOH B . P 7 HOH 32 6151 6151 HOH HOH B . P 7 HOH 33 6160 6160 HOH HOH B . P 7 HOH 34 6162 6162 HOH HOH B . P 7 HOH 35 6163 6163 HOH HOH B . P 7 HOH 36 6167 6167 HOH HOH B . P 7 HOH 37 6172 6172 HOH HOH B . P 7 HOH 38 6199 6199 HOH HOH B . P 7 HOH 39 6207 6207 HOH HOH B . P 7 HOH 40 6208 6208 HOH HOH B . P 7 HOH 41 6213 6213 HOH HOH B . P 7 HOH 42 6218 6218 HOH HOH B . P 7 HOH 43 6221 6221 HOH HOH B . P 7 HOH 44 6225 6225 HOH HOH B . P 7 HOH 45 6227 6227 HOH HOH B . P 7 HOH 46 6229 6229 HOH HOH B . P 7 HOH 47 6232 6232 HOH HOH B . P 7 HOH 48 6251 6251 HOH HOH B . P 7 HOH 49 6252 6252 HOH HOH B . Q 7 HOH 1 6003 6003 HOH HOH C . Q 7 HOH 2 6006 6006 HOH HOH C . Q 7 HOH 3 6011 6011 HOH HOH C . Q 7 HOH 4 6020 6020 HOH HOH C . Q 7 HOH 5 6025 6025 HOH HOH C . Q 7 HOH 6 6030 6030 HOH HOH C . Q 7 HOH 7 6038 6038 HOH HOH C . Q 7 HOH 8 6049 6049 HOH HOH C . Q 7 HOH 9 6054 6054 HOH HOH C . Q 7 HOH 10 6055 6055 HOH HOH C . Q 7 HOH 11 6056 6056 HOH HOH C . Q 7 HOH 12 6059 6059 HOH HOH C . Q 7 HOH 13 6060 6060 HOH HOH C . Q 7 HOH 14 6061 6061 HOH HOH C . Q 7 HOH 15 6062 6062 HOH HOH C . Q 7 HOH 16 6072 6072 HOH HOH C . Q 7 HOH 17 6078 6078 HOH HOH C . Q 7 HOH 18 6079 6079 HOH HOH C . Q 7 HOH 19 6080 6080 HOH HOH C . Q 7 HOH 20 6082 6082 HOH HOH C . Q 7 HOH 21 6086 6086 HOH HOH C . Q 7 HOH 22 6089 6089 HOH HOH C . Q 7 HOH 23 6091 6091 HOH HOH C . Q 7 HOH 24 6094 6094 HOH HOH C . Q 7 HOH 25 6097 6097 HOH HOH C . Q 7 HOH 26 6100 6100 HOH HOH C . Q 7 HOH 27 6109 6109 HOH HOH C . Q 7 HOH 28 6111 6111 HOH HOH C . Q 7 HOH 29 6114 6114 HOH HOH C . Q 7 HOH 30 6116 6116 HOH HOH C . Q 7 HOH 31 6118 6118 HOH HOH C . Q 7 HOH 32 6119 6119 HOH HOH C . Q 7 HOH 33 6123 6123 HOH HOH C . Q 7 HOH 34 6126 6126 HOH HOH C . Q 7 HOH 35 6127 6127 HOH HOH C . Q 7 HOH 36 6128 6128 HOH HOH C . Q 7 HOH 37 6129 6129 HOH HOH C . Q 7 HOH 38 6131 6131 HOH HOH C . Q 7 HOH 39 6137 6137 HOH HOH C . Q 7 HOH 40 6152 6152 HOH HOH C . Q 7 HOH 41 6156 6156 HOH HOH C . Q 7 HOH 42 6158 6158 HOH HOH C . Q 7 HOH 43 6166 6166 HOH HOH C . Q 7 HOH 44 6168 6168 HOH HOH C . Q 7 HOH 45 6193 6193 HOH HOH C . Q 7 HOH 46 6195 6195 HOH HOH C . Q 7 HOH 47 6200 6200 HOH HOH C . Q 7 HOH 48 6201 6201 HOH HOH C . Q 7 HOH 49 6206 6206 HOH HOH C . Q 7 HOH 50 6209 6209 HOH HOH C . Q 7 HOH 51 6214 6214 HOH HOH C . Q 7 HOH 52 6216 6216 HOH HOH C . Q 7 HOH 53 6219 6219 HOH HOH C . Q 7 HOH 54 6220 6220 HOH HOH C . Q 7 HOH 55 6226 6226 HOH HOH C . Q 7 HOH 56 6231 6231 HOH HOH C . Q 7 HOH 57 6239 6239 HOH HOH C . Q 7 HOH 58 6240 6240 HOH HOH C . Q 7 HOH 59 6242 6242 HOH HOH C . Q 7 HOH 60 6244 6244 HOH HOH C . Q 7 HOH 61 6245 6245 HOH HOH C . Q 7 HOH 62 6253 6253 HOH HOH C . R 7 HOH 1 6002 6002 HOH HOH D . R 7 HOH 2 6010 6010 HOH HOH D . R 7 HOH 3 6012 6012 HOH HOH D . R 7 HOH 4 6013 6013 HOH HOH D . R 7 HOH 5 6014 6014 HOH HOH D . R 7 HOH 6 6017 6017 HOH HOH D . R 7 HOH 7 6022 6022 HOH HOH D . R 7 HOH 8 6023 6023 HOH HOH D . R 7 HOH 9 6026 6026 HOH HOH D . R 7 HOH 10 6032 6032 HOH HOH D . R 7 HOH 11 6043 6043 HOH HOH D . R 7 HOH 12 6050 6050 HOH HOH D . R 7 HOH 13 6051 6051 HOH HOH D . R 7 HOH 14 6052 6052 HOH HOH D . R 7 HOH 15 6058 6058 HOH HOH D . R 7 HOH 16 6064 6064 HOH HOH D . R 7 HOH 17 6068 6068 HOH HOH D . R 7 HOH 18 6070 6070 HOH HOH D . R 7 HOH 19 6074 6074 HOH HOH D . R 7 HOH 20 6075 6075 HOH HOH D . R 7 HOH 21 6081 6081 HOH HOH D . R 7 HOH 22 6083 6083 HOH HOH D . R 7 HOH 23 6085 6085 HOH HOH D . R 7 HOH 24 6088 6088 HOH HOH D . R 7 HOH 25 6090 6090 HOH HOH D . R 7 HOH 26 6093 6093 HOH HOH D . R 7 HOH 27 6096 6096 HOH HOH D . R 7 HOH 28 6107 6107 HOH HOH D . R 7 HOH 29 6115 6115 HOH HOH D . R 7 HOH 30 6120 6120 HOH HOH D . R 7 HOH 31 6122 6122 HOH HOH D . R 7 HOH 32 6132 6132 HOH HOH D . R 7 HOH 33 6134 6134 HOH HOH D . R 7 HOH 34 6138 6138 HOH HOH D . R 7 HOH 35 6140 6140 HOH HOH D . R 7 HOH 36 6142 6142 HOH HOH D . R 7 HOH 37 6148 6148 HOH HOH D . R 7 HOH 38 6149 6149 HOH HOH D . R 7 HOH 39 6150 6150 HOH HOH D . R 7 HOH 40 6154 6154 HOH HOH D . R 7 HOH 41 6159 6159 HOH HOH D . R 7 HOH 42 6170 6170 HOH HOH D . R 7 HOH 43 6192 6192 HOH HOH D . R 7 HOH 44 6198 6198 HOH HOH D . R 7 HOH 45 6202 6202 HOH HOH D . R 7 HOH 46 6203 6203 HOH HOH D . R 7 HOH 47 6204 6204 HOH HOH D . R 7 HOH 48 6205 6205 HOH HOH D . R 7 HOH 49 6210 6210 HOH HOH D . R 7 HOH 50 6211 6211 HOH HOH D . R 7 HOH 51 6215 6215 HOH HOH D . R 7 HOH 52 6217 6217 HOH HOH D . R 7 HOH 53 6222 6222 HOH HOH D . R 7 HOH 54 6224 6224 HOH HOH D . R 7 HOH 55 6230 6230 HOH HOH D . R 7 HOH 56 6233 6233 HOH HOH D . R 7 HOH 57 6237 6237 HOH HOH D . R 7 HOH 58 6238 6238 HOH HOH D . R 7 HOH 59 6243 6243 HOH HOH D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 1010 ? CG ? A LYS 10 CG 2 1 Y 1 A LYS 1010 ? CD ? A LYS 10 CD 3 1 Y 1 A LYS 1010 ? CE ? A LYS 10 CE 4 1 Y 1 A LYS 1010 ? NZ ? A LYS 10 NZ 5 1 Y 1 B LYS 2010 ? CG ? B LYS 10 CG 6 1 Y 1 B LYS 2010 ? CD ? B LYS 10 CD 7 1 Y 1 B LYS 2010 ? CE ? B LYS 10 CE 8 1 Y 1 B LYS 2010 ? NZ ? B LYS 10 NZ # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXD phasing . ? 1 SHELXL-97 refinement . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 # _cell.entry_id 3MBU _cell.length_a 38.200 _cell.length_b 25.730 _cell.length_c 53.050 _cell.angle_alpha 90.00 _cell.angle_beta 105.33 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3MBU _symmetry.space_group_name_H-M 'P 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3MBU _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.40 _exptl_crystal.density_percent_sol 48.72 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details ;40% propanediol 0.2 M NaCl 0.1 M citrate pH 5.5, VAPOR DIFFUSION, temperature 295K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD ? ? ? 2 CCD ? ? ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M ? 'SINGLE WAVELENGTH' x-ray 2 1 M ? 'SINGLE WAVELENGTH' x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8 _diffrn_radiation_wavelength.wt 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'SLS BEAMLINE X10SA' SLS X10SA ? 0.8 2 SYNCHROTRON 'SLS BEAMLINE X10SA' SLS X10SA ? 0.8 # _reflns.entry_id 3MBU _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 4 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.05 _reflns.number_obs 34896 _reflns.number_all 40632 _reflns.percent_possible_obs ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # _refine.entry_id 3MBU _refine.ls_number_reflns_obs 34896 _refine.ls_number_reflns_all 40992 _refine.pdbx_ls_sigma_I -3 _refine.pdbx_ls_sigma_F 4 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 26.73 _refine.ls_d_res_high 1.05 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.127 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.127 _refine.ls_R_factor_R_free 0.169 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 2031 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'conjugate gradient against intensities' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1,2 _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 740 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 49 _refine_hist.number_atoms_solvent 232 _refine_hist.number_atoms_total 1021 _refine_hist.d_res_high 1.05 _refine_hist.d_res_low 26.73 # _database_PDB_matrix.entry_id 3MBU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3MBU _struct.title 'Structure of a bipyridine-modified PNA duplex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3MBU _struct_keywords.pdbx_keywords 'Peptide Nucleic acid' _struct_keywords.text 'bipyridine, Peptide Nucleic acid, PNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 4 ? J N N 5 ? K N N 6 ? L N N 4 ? M N N 6 ? N N N 5 ? O N N 7 ? P N N 7 ? Q N N 7 ? R N N 7 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3MBU _struct_ref.pdbx_db_accession 3MBU _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3MBU A 1 ? 10 ? 3MBU 1001 ? 1010 ? 1001 1010 2 1 3MBU B 1 ? 10 ? 3MBU 2001 ? 2010 ? 2001 2010 3 1 3MBU C 1 ? 10 ? 3MBU 3001 ? 3010 ? 3001 3010 4 1 3MBU D 1 ? 10 ? 3MBU 4001 ? 4010 ? 4001 4010 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 author_defined_assembly ? monomeric 1 4 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,E,F,O 2 1 B,G,H,P 3 1 C,I,J,K,Q 4 1 D,L,M,N,R # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GPN 1 C ? ? ? 1_555 A GPN 2 N ? ? A GPN 1001 A GPN 1002 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale2 covale both ? A GPN 2 C ? ? ? 1_555 A CPN 3 N ? ? A GPN 1002 A CPN 1003 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale3 covale both ? A CPN 3 C ? ? ? 1_555 A APN 4 N ? ? A CPN 1003 A APN 1004 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale4 covale both ? A APN 4 C ? ? ? 1_555 A KPN 5 N ? ? A APN 1004 A KPN 1005 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale5 covale both ? A KPN 5 C ? ? ? 1_555 A TPN 6 N ? ? A KPN 1005 A TPN 1006 1_555 ? ? ? ? ? ? ? 1.311 ? ? covale6 covale both ? A TPN 6 C ? ? ? 1_555 A GPN 7 N ? ? A TPN 1006 A GPN 1007 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale7 covale both ? A GPN 7 C ? ? ? 1_555 A CPN 8 N ? ? A GPN 1007 A CPN 1008 1_555 ? ? ? ? ? ? ? 1.297 ? ? covale8 covale both ? A CPN 8 C ? ? ? 1_555 A CPN 9 N ? ? A CPN 1008 A CPN 1009 1_555 ? ? ? ? ? ? ? 1.313 ? ? covale9 covale both ? A CPN 9 C ? ? ? 1_555 A LYS 10 N ? ? A CPN 1009 A LYS 1010 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale10 covale both ? B GPN 1 C ? ? ? 1_555 B GPN 2 N ? ? B GPN 2001 B GPN 2002 1_555 ? ? ? ? ? ? ? 1.313 ? ? covale11 covale both ? B GPN 2 C ? ? ? 1_555 B CPN 3 N ? ? B GPN 2002 B CPN 2003 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale12 covale both ? B CPN 3 C ? ? ? 1_555 B APN 4 N ? ? B CPN 2003 B APN 2004 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale13 covale both ? B APN 4 C ? ? ? 1_555 B KPN 5 N ? ? B APN 2004 B KPN 2005 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale14 covale both ? B KPN 5 C ? ? ? 1_555 B TPN 6 N ? ? B KPN 2005 B TPN 2006 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale15 covale both ? B TPN 6 C ? ? ? 1_555 B GPN 7 N ? ? B TPN 2006 B GPN 2007 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale16 covale both ? B GPN 7 C ? ? ? 1_555 B CPN 8 N ? ? B GPN 2007 B CPN 2008 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale17 covale both ? B CPN 8 C ? ? ? 1_555 B CPN 9 N ? ? B CPN 2008 B CPN 2009 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale18 covale both ? B CPN 9 C ? ? ? 1_555 B LYS 10 N ? ? B CPN 2009 B LYS 2010 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale19 covale both ? C GPN 1 C ? ? ? 1_555 C GPN 2 N ? ? C GPN 3001 C GPN 3002 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale20 covale both ? C GPN 2 C ? ? ? 1_555 C CPN 3 N ? ? C GPN 3002 C CPN 3003 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale21 covale both ? C CPN 3 C ? ? ? 1_555 C APN 4 N ? ? C CPN 3003 C APN 3004 1_555 ? ? ? ? ? ? ? 1.310 ? ? covale22 covale both ? C APN 4 C ? ? ? 1_555 C KPN 5 N ? ? C APN 3004 C KPN 3005 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale23 covale both ? C KPN 5 C ? ? ? 1_555 C TPN 6 N ? ? C KPN 3005 C TPN 3006 1_555 ? ? ? ? ? ? ? 1.297 ? ? covale24 covale both ? C TPN 6 C ? ? ? 1_555 C GPN 7 N ? ? C TPN 3006 C GPN 3007 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale25 covale both ? C GPN 7 C ? ? ? 1_555 C CPN 8 N ? ? C GPN 3007 C CPN 3008 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale26 covale both ? C CPN 8 C ? ? ? 1_555 C CPN 9 N ? ? C CPN 3008 C CPN 3009 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale27 covale both ? C CPN 9 C ? ? ? 1_555 C LYS 10 N ? ? C CPN 3009 C LYS 3010 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale28 covale both ? D GPN 1 C ? ? ? 1_555 D GPN 2 N ? ? D GPN 4001 D GPN 4002 1_555 ? ? ? ? ? ? ? 1.306 ? ? covale29 covale both ? D GPN 2 C ? ? ? 1_555 D CPN 3 N ? ? D GPN 4002 D CPN 4003 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale30 covale both ? D CPN 3 C ? ? ? 1_555 D APN 4 N ? ? D CPN 4003 D APN 4004 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale31 covale both ? D APN 4 C ? ? ? 1_555 D KPN 5 N ? ? D APN 4004 D KPN 4005 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale32 covale both ? D KPN 5 C ? ? ? 1_555 D TPN 6 N ? ? D KPN 4005 D TPN 4006 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale33 covale both ? D TPN 6 C ? ? ? 1_555 D GPN 7 N ? ? D TPN 4006 D GPN 4007 1_555 ? ? ? ? ? ? ? 1.300 ? ? covale34 covale both ? D GPN 7 C ? ? ? 1_555 D CPN 8 N ? ? D GPN 4007 D CPN 4008 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale35 covale both ? D CPN 8 C ? ? ? 1_555 D CPN 9 N ? ? D CPN 4008 D CPN 4009 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale36 covale both ? D CPN 9 C ? ? ? 1_555 D LYS 10 N ? ? D CPN 4009 D LYS 4010 1_555 ? ? ? ? ? ? ? 1.337 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 GPN A 1 ? . . . . GPN A 1001 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 2 GPN A 2 ? . . . . GPN A 1002 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 3 CPN A 3 ? . . . . CPN A 1003 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 4 APN A 4 ? . . . . APN A 1004 ? 1_555 . . . . . . . ? 1 APN None 'Non-standard residue' 5 KPN A 5 ? . . . . KPN A 1005 ? 1_555 . . . . . . . ? 1 KPN None 'Non-standard residue' 6 TPN A 6 ? . . . . TPN A 1006 ? 1_555 . . . . . . . ? 1 TPN None 'Non-standard residue' 7 GPN A 7 ? . . . . GPN A 1007 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 8 CPN A 8 ? . . . . CPN A 1008 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 9 CPN A 9 ? . . . . CPN A 1009 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 10 GPN B 1 ? . . . . GPN B 2001 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 11 GPN B 2 ? . . . . GPN B 2002 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 12 CPN B 3 ? . . . . CPN B 2003 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 13 APN B 4 ? . . . . APN B 2004 ? 1_555 . . . . . . . ? 1 APN None 'Non-standard residue' 14 KPN B 5 ? . . . . KPN B 2005 ? 1_555 . . . . . . . ? 1 KPN None 'Non-standard residue' 15 TPN B 6 ? . . . . TPN B 2006 ? 1_555 . . . . . . . ? 1 TPN None 'Non-standard residue' 16 GPN B 7 ? . . . . GPN B 2007 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 17 CPN B 8 ? . . . . CPN B 2008 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 18 CPN B 9 ? . . . . CPN B 2009 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 19 GPN C 1 ? . . . . GPN C 3001 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 20 GPN C 2 ? . . . . GPN C 3002 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 21 CPN C 3 ? . . . . CPN C 3003 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 22 APN C 4 ? . . . . APN C 3004 ? 1_555 . . . . . . . ? 1 APN None 'Non-standard residue' 23 KPN C 5 ? . . . . KPN C 3005 ? 1_555 . . . . . . . ? 1 KPN None 'Non-standard residue' 24 TPN C 6 ? . . . . TPN C 3006 ? 1_555 . . . . . . . ? 1 TPN None 'Non-standard residue' 25 GPN C 7 ? . . . . GPN C 3007 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 26 CPN C 8 ? . . . . CPN C 3008 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 27 CPN C 9 ? . . . . CPN C 3009 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 28 GPN D 1 ? . . . . GPN D 4001 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 29 GPN D 2 ? . . . . GPN D 4002 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 30 CPN D 3 ? . . . . CPN D 4003 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 31 APN D 4 ? . . . . APN D 4004 ? 1_555 . . . . . . . ? 1 APN None 'Non-standard residue' 32 KPN D 5 ? . . . . KPN D 4005 ? 1_555 . . . . . . . ? 1 KPN None 'Non-standard residue' 33 TPN D 6 ? . . . . TPN D 4006 ? 1_555 . . . . . . . ? 1 TPN None 'Non-standard residue' 34 GPN D 7 ? . . . . GPN D 4007 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 35 CPN D 8 ? . . . . CPN D 4008 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 36 CPN D 9 ? . . . . CPN D 4009 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EDO 5003 ? 3 'BINDING SITE FOR RESIDUE EDO A 5003' AC2 Software A PGR 5009 ? 3 'BINDING SITE FOR RESIDUE PGR A 5009' AC3 Software B PGR 5004 ? 3 'BINDING SITE FOR RESIDUE PGR B 5004' AC4 Software B PGR 5005 ? 2 'BINDING SITE FOR RESIDUE PGR B 5005' AC5 Software C CO3 5002 ? 7 'BINDING SITE FOR RESIDUE CO3 C 5002' AC6 Software C GOL 5006 ? 4 'BINDING SITE FOR RESIDUE GOL C 5006' AC7 Software C PGO 5007 ? 2 'BINDING SITE FOR RESIDUE PGO C 5007' AC8 Software D CO3 5001 ? 5 'BINDING SITE FOR RESIDUE CO3 D 5001' AC9 Software D PGO 5008 ? 2 'BINDING SITE FOR RESIDUE PGO D 5008' BC1 Software D GOL 5010 ? 3 'BINDING SITE FOR RESIDUE GOL D 5010' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 GPN A 7 ? GPN A 1007 . ? 1_555 ? 2 AC1 3 CPN A 8 ? CPN A 1008 . ? 1_555 ? 3 AC1 3 HOH O . ? HOH A 6108 . ? 1_555 ? 4 AC2 3 GPN A 2 ? GPN A 1002 . ? 1_555 ? 5 AC2 3 CPN A 3 ? CPN A 1003 . ? 1_555 ? 6 AC2 3 HOH O . ? HOH A 6021 . ? 1_555 ? 7 AC3 3 GPN B 1 ? GPN B 2001 . ? 1_555 ? 8 AC3 3 GPN B 2 ? GPN B 2002 . ? 1_555 ? 9 AC3 3 CPN C 9 ? CPN C 3009 . ? 1_545 ? 10 AC4 2 GPN B 7 ? GPN B 2007 . ? 1_555 ? 11 AC4 2 CPN B 8 ? CPN B 2008 . ? 1_555 ? 12 AC5 7 CPN B 9 ? CPN B 2009 . ? 1_666 ? 13 AC5 7 GPN C 1 ? GPN C 3001 . ? 1_555 ? 14 AC5 7 GPN C 2 ? GPN C 3002 . ? 1_555 ? 15 AC5 7 GOL J . ? GOL C 5006 . ? 1_555 ? 16 AC5 7 HOH Q . ? HOH C 6038 . ? 1_555 ? 17 AC5 7 HOH Q . ? HOH C 6060 . ? 1_555 ? 18 AC5 7 HOH Q . ? HOH C 6152 . ? 1_555 ? 19 AC6 4 GPN C 2 ? GPN C 3002 . ? 1_555 ? 20 AC6 4 CPN C 3 ? CPN C 3003 . ? 1_555 ? 21 AC6 4 CO3 I . ? CO3 C 5002 . ? 1_555 ? 22 AC6 4 HOH Q . ? HOH C 6061 . ? 1_555 ? 23 AC7 2 GPN C 7 ? GPN C 3007 . ? 1_555 ? 24 AC7 2 CPN C 8 ? CPN C 3008 . ? 1_555 ? 25 AC8 5 GPN D 1 ? GPN D 4001 . ? 1_555 ? 26 AC8 5 GPN D 2 ? GPN D 4002 . ? 1_555 ? 27 AC8 5 GOL N . ? GOL D 5010 . ? 1_555 ? 28 AC8 5 HOH R . ? HOH D 6115 . ? 1_555 ? 29 AC8 5 HOH R . ? HOH D 6122 . ? 1_555 ? 30 AC9 2 GPN D 7 ? GPN D 4007 . ? 1_555 ? 31 AC9 2 CPN D 8 ? CPN D 4008 . ? 1_555 ? 32 BC1 3 GPN D 2 ? GPN D 4002 . ? 1_555 ? 33 BC1 3 CPN D 3 ? CPN D 4003 . ? 1_555 ? 34 BC1 3 CO3 L . ? CO3 D 5001 . ? 1_555 ? # _pdbx_entry_details.entry_id 3MBU _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 6045 ? O HOH . 2 1 C HOH 6062 ? Q HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal APN "C8'" C N N 1 APN "C7'" C N N 2 APN "O7'" O N N 3 APN "C5'" C N N 4 APN C C N N 5 APN O O N N 6 APN OXT O N N 7 APN "N4'" N N N 8 APN "C3'" C N N 9 APN "C2'" C N N 10 APN N N N N 11 APN N9 N Y N 12 APN C8 C Y N 13 APN N7 N Y N 14 APN C5 C Y N 15 APN C6 C Y N 16 APN N6 N N N 17 APN N1 N Y N 18 APN C2 C Y N 19 APN N3 N Y N 20 APN C4 C Y N 21 APN "H8'1" H N N 22 APN "H8'2" H N N 23 APN "H5'1" H N N 24 APN "H5'2" H N N 25 APN HXT H N N 26 APN "H3'1" H N N 27 APN "H3'2" H N N 28 APN "H2'1" H N N 29 APN "H2'2" H N N 30 APN H H N N 31 APN H2 H N N 32 APN H3 H N N 33 APN H8 H N N 34 APN HN61 H N N 35 APN HN62 H N N 36 APN H21 H N N 37 CO3 C C N N 38 CO3 O1 O N N 39 CO3 O2 O N N 40 CO3 O3 O N N 41 CPN "C8'" C N N 42 CPN "C7'" C N N 43 CPN "O7'" O N N 44 CPN "C5'" C N N 45 CPN C C N N 46 CPN O O N N 47 CPN OXT O N N 48 CPN "N4'" N N N 49 CPN "C3'" C N N 50 CPN "C2'" C N N 51 CPN N N N N 52 CPN N1 N N N 53 CPN C2 C N N 54 CPN N3 N N N 55 CPN C4 C N N 56 CPN C5 C N N 57 CPN C6 C N N 58 CPN O2 O N N 59 CPN N4 N N N 60 CPN "H8'1" H N N 61 CPN "H8'2" H N N 62 CPN "H5'1" H N N 63 CPN "H5'2" H N N 64 CPN HXT H N N 65 CPN "H3'1" H N N 66 CPN "H3'2" H N N 67 CPN "H2'1" H N N 68 CPN "H2'2" H N N 69 CPN H H N N 70 CPN H2 H N N 71 CPN H3 H N N 72 CPN H5 H N N 73 CPN H6 H N N 74 CPN HN41 H N N 75 CPN HN42 H N N 76 EDO C1 C N N 77 EDO O1 O N N 78 EDO C2 C N N 79 EDO O2 O N N 80 EDO H11 H N N 81 EDO H12 H N N 82 EDO HO1 H N N 83 EDO H21 H N N 84 EDO H22 H N N 85 EDO HO2 H N N 86 GOL C1 C N N 87 GOL O1 O N N 88 GOL C2 C N N 89 GOL O2 O N N 90 GOL C3 C N N 91 GOL O3 O N N 92 GOL H11 H N N 93 GOL H12 H N N 94 GOL HO1 H N N 95 GOL H2 H N N 96 GOL HO2 H N N 97 GOL H31 H N N 98 GOL H32 H N N 99 GOL HO3 H N N 100 GPN "C8'" C N N 101 GPN "C7'" C N N 102 GPN "O7'" O N N 103 GPN "C5'" C N N 104 GPN C C N N 105 GPN O O N N 106 GPN OXT O N N 107 GPN "N4'" N N N 108 GPN "C3'" C N N 109 GPN "C2'" C N N 110 GPN N N N N 111 GPN N9 N Y N 112 GPN C8 C Y N 113 GPN N7 N Y N 114 GPN C5 C Y N 115 GPN C6 C N N 116 GPN O6 O N N 117 GPN N1 N N N 118 GPN C2 C N N 119 GPN N2 N N N 120 GPN N3 N N N 121 GPN C4 C Y N 122 GPN "H8'1" H N N 123 GPN "H8'2" H N N 124 GPN "H5'1" H N N 125 GPN "H5'2" H N N 126 GPN HXT H N N 127 GPN "H3'1" H N N 128 GPN "H3'2" H N N 129 GPN "H2'1" H N N 130 GPN "H2'2" H N N 131 GPN H H N N 132 GPN H2 H N N 133 GPN H3 H N N 134 GPN H8 H N N 135 GPN HN1 H N N 136 GPN HN21 H N N 137 GPN HN22 H N N 138 HOH O O N N 139 HOH H1 H N N 140 HOH H2 H N N 141 KPN C C N N 142 KPN C1 C Y N 143 KPN N1 N Y N 144 KPN C2 C Y N 145 KPN N2 N Y N 146 KPN C3 C Y N 147 KPN C4 C Y N 148 KPN C5 C Y N 149 KPN C6 C Y N 150 KPN C7 C Y N 151 KPN C8 C Y N 152 KPN C9 C Y N 153 KPN N N N N 154 KPN O O N N 155 KPN C10 C Y N 156 KPN "C2'" C N N 157 KPN "C3'" C N N 158 KPN "N4'" N N N 159 KPN "C5'" C N N 160 KPN "C7'" C N N 161 KPN "O7'" O N N 162 KPN "C8'" C N N 163 KPN OXT O N N 164 KPN H1 H N N 165 KPN H3 H N N 166 KPN H4 H N N 167 KPN H7 H N N 168 KPN H8 H N N 169 KPN H9 H N N 170 KPN H H N N 171 KPN H2 H N N 172 KPN H10 H N N 173 KPN "H2'" H N N 174 KPN "H2'A" H N N 175 KPN "H3'" H N N 176 KPN "H3'A" H N N 177 KPN "H5'" H N N 178 KPN "H5'A" H N N 179 KPN "H8'" H N N 180 KPN "H8'A" H N N 181 KPN HXT H N N 182 LYS N N N N 183 LYS CA C N S 184 LYS C C N N 185 LYS O O N N 186 LYS CB C N N 187 LYS CG C N N 188 LYS CD C N N 189 LYS CE C N N 190 LYS NZ N N N 191 LYS OXT O N N 192 LYS H H N N 193 LYS H2 H N N 194 LYS HA H N N 195 LYS HB2 H N N 196 LYS HB3 H N N 197 LYS HG2 H N N 198 LYS HG3 H N N 199 LYS HD2 H N N 200 LYS HD3 H N N 201 LYS HE2 H N N 202 LYS HE3 H N N 203 LYS HZ1 H N N 204 LYS HZ2 H N N 205 LYS HZ3 H N N 206 LYS HXT H N N 207 PGO C1 C N N 208 PGO C2 C N S 209 PGO C3 C N N 210 PGO O1 O N N 211 PGO O2 O N N 212 PGO H11 H N N 213 PGO H12 H N N 214 PGO H2 H N N 215 PGO H31 H N N 216 PGO H32 H N N 217 PGO H33 H N N 218 PGO HO1 H N N 219 PGO HO2 H N N 220 PGR C1 C N N 221 PGR C2 C N R 222 PGR C3 C N N 223 PGR O1 O N N 224 PGR O2 O N N 225 PGR H11 H N N 226 PGR H12 H N N 227 PGR H2 H N N 228 PGR H31 H N N 229 PGR H32 H N N 230 PGR H33 H N N 231 PGR HO1 H N N 232 PGR HO2 H N N 233 TPN "C8'" C N N 234 TPN "C7'" C N N 235 TPN "O7'" O N N 236 TPN "C5'" C N N 237 TPN C C N N 238 TPN O O N N 239 TPN OXT O N N 240 TPN "N4'" N N N 241 TPN "C3'" C N N 242 TPN "C2'" C N N 243 TPN N N N N 244 TPN N1 N N N 245 TPN C6 C N N 246 TPN C2 C N N 247 TPN O2 O N N 248 TPN N3 N N N 249 TPN C4 C N N 250 TPN O4 O N N 251 TPN C5 C N N 252 TPN C5M C N N 253 TPN "H8'1" H N N 254 TPN "H8'2" H N N 255 TPN "H5'1" H N N 256 TPN "H5'2" H N N 257 TPN HXT H N N 258 TPN "H3'1" H N N 259 TPN "H3'2" H N N 260 TPN "H2'1" H N N 261 TPN "H2'2" H N N 262 TPN H H N N 263 TPN H2 H N N 264 TPN H3 H N N 265 TPN H6 H N N 266 TPN HN3 H N N 267 TPN HM51 H N N 268 TPN HM52 H N N 269 TPN HM53 H N N 270 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal APN "C8'" "C7'" sing N N 1 APN "C8'" N9 sing N N 2 APN "C8'" "H8'1" sing N N 3 APN "C8'" "H8'2" sing N N 4 APN "C7'" "O7'" doub N N 5 APN "C7'" "N4'" sing N N 6 APN "C5'" C sing N N 7 APN "C5'" "N4'" sing N N 8 APN "C5'" "H5'1" sing N N 9 APN "C5'" "H5'2" sing N N 10 APN C O doub N N 11 APN C OXT sing N N 12 APN OXT HXT sing N N 13 APN "N4'" "C3'" sing N N 14 APN "C3'" "C2'" sing N N 15 APN "C3'" "H3'1" sing N N 16 APN "C3'" "H3'2" sing N N 17 APN "C2'" N sing N N 18 APN "C2'" "H2'1" sing N N 19 APN "C2'" "H2'2" sing N N 20 APN N H sing N N 21 APN N H2 sing N N 22 APN N H3 sing N N 23 APN N9 C8 sing Y N 24 APN N9 C4 sing Y N 25 APN C8 N7 doub Y N 26 APN C8 H8 sing N N 27 APN N7 C5 sing Y N 28 APN C5 C6 sing Y N 29 APN C5 C4 doub Y N 30 APN C6 N6 sing N N 31 APN C6 N1 doub Y N 32 APN N6 HN61 sing N N 33 APN N6 HN62 sing N N 34 APN N1 C2 sing Y N 35 APN C2 N3 doub Y N 36 APN C2 H21 sing N N 37 APN N3 C4 sing Y N 38 CO3 C O1 doub N N 39 CO3 C O2 sing N N 40 CO3 C O3 sing N N 41 CPN "C8'" "C7'" sing N N 42 CPN "C8'" N1 sing N N 43 CPN "C8'" "H8'1" sing N N 44 CPN "C8'" "H8'2" sing N N 45 CPN "C7'" "O7'" doub N N 46 CPN "C7'" "N4'" sing N N 47 CPN "C5'" C sing N N 48 CPN "C5'" "N4'" sing N N 49 CPN "C5'" "H5'1" sing N N 50 CPN "C5'" "H5'2" sing N N 51 CPN C O doub N N 52 CPN C OXT sing N N 53 CPN OXT HXT sing N N 54 CPN "N4'" "C3'" sing N N 55 CPN "C3'" "C2'" sing N N 56 CPN "C3'" "H3'1" sing N N 57 CPN "C3'" "H3'2" sing N N 58 CPN "C2'" N sing N N 59 CPN "C2'" "H2'1" sing N N 60 CPN "C2'" "H2'2" sing N N 61 CPN N H sing N N 62 CPN N H2 sing N N 63 CPN N H3 sing N N 64 CPN N1 C2 sing N N 65 CPN N1 C6 sing N N 66 CPN C2 N3 sing N N 67 CPN C2 O2 doub N N 68 CPN N3 C4 doub N N 69 CPN C4 C5 sing N N 70 CPN C4 N4 sing N N 71 CPN C5 C6 doub N N 72 CPN C5 H5 sing N N 73 CPN C6 H6 sing N N 74 CPN N4 HN41 sing N N 75 CPN N4 HN42 sing N N 76 EDO C1 O1 sing N N 77 EDO C1 C2 sing N N 78 EDO C1 H11 sing N N 79 EDO C1 H12 sing N N 80 EDO O1 HO1 sing N N 81 EDO C2 O2 sing N N 82 EDO C2 H21 sing N N 83 EDO C2 H22 sing N N 84 EDO O2 HO2 sing N N 85 GOL C1 O1 sing N N 86 GOL C1 C2 sing N N 87 GOL C1 H11 sing N N 88 GOL C1 H12 sing N N 89 GOL O1 HO1 sing N N 90 GOL C2 O2 sing N N 91 GOL C2 C3 sing N N 92 GOL C2 H2 sing N N 93 GOL O2 HO2 sing N N 94 GOL C3 O3 sing N N 95 GOL C3 H31 sing N N 96 GOL C3 H32 sing N N 97 GOL O3 HO3 sing N N 98 GPN "C8'" "C7'" sing N N 99 GPN "C8'" N9 sing N N 100 GPN "C8'" "H8'1" sing N N 101 GPN "C8'" "H8'2" sing N N 102 GPN "C7'" "O7'" doub N N 103 GPN "C7'" "N4'" sing N N 104 GPN "C5'" C sing N N 105 GPN "C5'" "N4'" sing N N 106 GPN "C5'" "H5'1" sing N N 107 GPN "C5'" "H5'2" sing N N 108 GPN C O doub N N 109 GPN C OXT sing N N 110 GPN OXT HXT sing N N 111 GPN "N4'" "C3'" sing N N 112 GPN "C3'" "C2'" sing N N 113 GPN "C3'" "H3'1" sing N N 114 GPN "C3'" "H3'2" sing N N 115 GPN "C2'" N sing N N 116 GPN "C2'" "H2'1" sing N N 117 GPN "C2'" "H2'2" sing N N 118 GPN N H sing N N 119 GPN N H2 sing N N 120 GPN N H3 sing N N 121 GPN N9 C8 sing Y N 122 GPN N9 C4 sing Y N 123 GPN C8 N7 doub Y N 124 GPN C8 H8 sing N N 125 GPN N7 C5 sing Y N 126 GPN C5 C6 sing N N 127 GPN C5 C4 doub Y N 128 GPN C6 O6 doub N N 129 GPN C6 N1 sing N N 130 GPN N1 C2 sing N N 131 GPN N1 HN1 sing N N 132 GPN C2 N2 sing N N 133 GPN C2 N3 doub N N 134 GPN N2 HN21 sing N N 135 GPN N2 HN22 sing N N 136 GPN N3 C4 sing N N 137 HOH O H1 sing N N 138 HOH O H2 sing N N 139 KPN C O doub N N 140 KPN C "C5'" sing N N 141 KPN C OXT sing N N 142 KPN C1 N1 doub Y N 143 KPN C1 C2 sing Y N 144 KPN C1 H1 sing N N 145 KPN N1 C5 sing Y N 146 KPN C2 C3 doub Y N 147 KPN C2 "C8'" sing N N 148 KPN N2 C6 doub Y N 149 KPN N2 C10 sing Y N 150 KPN C3 C4 sing Y N 151 KPN C3 H3 sing N N 152 KPN C4 C5 doub Y N 153 KPN C4 H4 sing N N 154 KPN C5 C6 sing Y N 155 KPN C6 C7 sing Y N 156 KPN C7 C8 doub Y N 157 KPN C7 H7 sing N N 158 KPN C8 C9 sing Y N 159 KPN C8 H8 sing N N 160 KPN C9 C10 doub Y N 161 KPN C9 H9 sing N N 162 KPN N "C2'" sing N N 163 KPN N H sing N N 164 KPN N H2 sing N N 165 KPN C10 H10 sing N N 166 KPN "C2'" "C3'" sing N N 167 KPN "C2'" "H2'" sing N N 168 KPN "C2'" "H2'A" sing N N 169 KPN "C3'" "N4'" sing N N 170 KPN "C3'" "H3'" sing N N 171 KPN "C3'" "H3'A" sing N N 172 KPN "N4'" "C5'" sing N N 173 KPN "N4'" "C7'" sing N N 174 KPN "C5'" "H5'" sing N N 175 KPN "C5'" "H5'A" sing N N 176 KPN "C7'" "O7'" doub N N 177 KPN "C7'" "C8'" sing N N 178 KPN "C8'" "H8'" sing N N 179 KPN "C8'" "H8'A" sing N N 180 KPN OXT HXT sing N N 181 LYS N CA sing N N 182 LYS N H sing N N 183 LYS N H2 sing N N 184 LYS CA C sing N N 185 LYS CA CB sing N N 186 LYS CA HA sing N N 187 LYS C O doub N N 188 LYS C OXT sing N N 189 LYS CB CG sing N N 190 LYS CB HB2 sing N N 191 LYS CB HB3 sing N N 192 LYS CG CD sing N N 193 LYS CG HG2 sing N N 194 LYS CG HG3 sing N N 195 LYS CD CE sing N N 196 LYS CD HD2 sing N N 197 LYS CD HD3 sing N N 198 LYS CE NZ sing N N 199 LYS CE HE2 sing N N 200 LYS CE HE3 sing N N 201 LYS NZ HZ1 sing N N 202 LYS NZ HZ2 sing N N 203 LYS NZ HZ3 sing N N 204 LYS OXT HXT sing N N 205 PGO C1 C2 sing N N 206 PGO C1 O1 sing N N 207 PGO C1 H11 sing N N 208 PGO C1 H12 sing N N 209 PGO C2 C3 sing N N 210 PGO C2 O2 sing N N 211 PGO C2 H2 sing N N 212 PGO C3 H31 sing N N 213 PGO C3 H32 sing N N 214 PGO C3 H33 sing N N 215 PGO O1 HO1 sing N N 216 PGO O2 HO2 sing N N 217 PGR C1 C2 sing N N 218 PGR C1 O1 sing N N 219 PGR C1 H11 sing N N 220 PGR C1 H12 sing N N 221 PGR C2 C3 sing N N 222 PGR C2 O2 sing N N 223 PGR C2 H2 sing N N 224 PGR C3 H31 sing N N 225 PGR C3 H32 sing N N 226 PGR C3 H33 sing N N 227 PGR O1 HO1 sing N N 228 PGR O2 HO2 sing N N 229 TPN "C8'" "C7'" sing N N 230 TPN "C8'" N1 sing N N 231 TPN "C8'" "H8'1" sing N N 232 TPN "C8'" "H8'2" sing N N 233 TPN "C7'" "O7'" doub N N 234 TPN "C7'" "N4'" sing N N 235 TPN "C5'" C sing N N 236 TPN "C5'" "N4'" sing N N 237 TPN "C5'" "H5'1" sing N N 238 TPN "C5'" "H5'2" sing N N 239 TPN C O doub N N 240 TPN C OXT sing N N 241 TPN OXT HXT sing N N 242 TPN "N4'" "C3'" sing N N 243 TPN "C3'" "C2'" sing N N 244 TPN "C3'" "H3'1" sing N N 245 TPN "C3'" "H3'2" sing N N 246 TPN "C2'" N sing N N 247 TPN "C2'" "H2'1" sing N N 248 TPN "C2'" "H2'2" sing N N 249 TPN N H sing N N 250 TPN N H2 sing N N 251 TPN N H3 sing N N 252 TPN N1 C6 sing N N 253 TPN N1 C2 sing N N 254 TPN C6 C5 doub N N 255 TPN C6 H6 sing N N 256 TPN C2 O2 doub N N 257 TPN C2 N3 sing N N 258 TPN N3 C4 sing N N 259 TPN N3 HN3 sing N N 260 TPN C4 O4 doub N N 261 TPN C4 C5 sing N N 262 TPN C5 C5M sing N N 263 TPN C5M HM51 sing N N 264 TPN C5M HM52 sing N N 265 TPN C5M HM53 sing N N 266 # _atom_sites.entry_id 3MBU _atom_sites.fract_transf_matrix[1][1] 0.026178 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007176 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.038865 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019546 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O # loop_