HEADER TRANSFERASE 29-MAR-10 3MCQ TITLE CRYSTAL STRUCTURE OF THIAMINE-MONOPHOSPHATE KINASE (MFLA_0573) FROM TITLE 2 METHYLOBACILLUS FLAGELLATUS KT AT 1.91 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIAMINE-MONOPHOSPHATE KINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.4.16; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOBACILLUS FLAGELLATUS; SOURCE 3 ORGANISM_TAXID: 265072; SOURCE 4 STRAIN: KT / ATCC 51484 / DSM 6875; SOURCE 5 GENE: MFLA_0573; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3MCQ 1 REMARK SEQADV LINK REVDAT 4 17-JUL-19 3MCQ 1 REMARK LINK REVDAT 3 25-OCT-17 3MCQ 1 REMARK REVDAT 2 13-JUL-11 3MCQ 1 VERSN REVDAT 1 19-MAY-10 3MCQ 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF THIAMINE-MONOPHOSPHATE KINASE JRNL TITL 2 (MFLA_0573) FROM METHYLOBACILLUS FLAGELLATUS KT AT 1.91 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 25833 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1315 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1743 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2241 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 136 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 37.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.42000 REMARK 3 B22 (A**2) : 0.42000 REMARK 3 B33 (A**2) : -0.63000 REMARK 3 B12 (A**2) : 0.21000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.161 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.429 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2452 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1649 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3339 ; 1.525 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4066 ; 1.251 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 333 ; 6.231 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;37.950 ;24.747 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 382 ;12.684 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;17.321 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 383 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2735 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 452 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1548 ; 0.667 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 628 ; 0.180 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2493 ; 1.196 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 904 ; 2.185 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 830 ; 3.574 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): 25.6670 -1.0280 45.8220 REMARK 3 T TENSOR REMARK 3 T11: 0.2081 T22: 0.0501 REMARK 3 T33: 0.0298 T12: 0.0050 REMARK 3 T13: 0.0108 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.7776 L22: 0.8958 REMARK 3 L33: 2.6792 L12: -0.0211 REMARK 3 L13: 0.1246 L23: -0.5245 REMARK 3 S TENSOR REMARK 3 S11: -0.0234 S12: 0.0870 S13: -0.0640 REMARK 3 S21: -0.0878 S22: 0.0321 S23: -0.0440 REMARK 3 S31: 0.1434 S32: 0.0408 S33: -0.0087 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 142 A 296 REMARK 3 ORIGIN FOR THE GROUP (A): 27.4570 23.4450 38.6730 REMARK 3 T TENSOR REMARK 3 T11: 0.5878 T22: 0.0787 REMARK 3 T33: 0.0458 T12: -0.0394 REMARK 3 T13: -0.0369 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 3.1340 L22: 1.9847 REMARK 3 L33: 3.5946 L12: -0.7297 REMARK 3 L13: 1.6772 L23: -1.5252 REMARK 3 S TENSOR REMARK 3 S11: -0.3625 S12: 0.0476 S13: 0.1616 REMARK 3 S21: 0.5719 S22: 0.1521 S23: -0.1248 REMARK 3 S31: -1.0186 S32: 0.0990 S33: 0.2104 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 297 A 308 REMARK 3 ORIGIN FOR THE GROUP (A): 21.5440 37.9870 42.5960 REMARK 3 T TENSOR REMARK 3 T11: 0.9966 T22: 0.2691 REMARK 3 T33: 0.6446 T12: 0.1308 REMARK 3 T13: -0.1922 T23: 0.1099 REMARK 3 L TENSOR REMARK 3 L11: 10.2114 L22: 0.1541 REMARK 3 L33: 35.9984 L12: -0.6837 REMARK 3 L13: 9.7586 L23: 0.8209 REMARK 3 S TENSOR REMARK 3 S11: -0.1007 S12: -0.7456 S13: 1.3705 REMARK 3 S21: -0.0853 S22: 0.0973 S23: -0.0636 REMARK 3 S31: -0.8907 S32: -1.2125 S33: 0.0035 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REMARK 3 REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. REMARK 3 POLYETHYLENE GLYCOL (PEG, PGE, PG4, AND 1PE) FROM THE REMARK 3 CRYSTALLIZATION SOLUTION HAS BEEN MODELED INTO THE SOLVENT REMARK 3 STRUCTURE. 5. SODIUM IONS (NA) FROM THE PROTEIN BUFFER HAVE BEEN REMARK 3 MODELED INTO THE SOLVENT STRUCTURE. 6. TLS GROUPS WERE ASSIGNED REMARK 3 WITH THE AID OF THE TLSMD SERVER. REMARK 4 REMARK 4 3MCQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058386. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97951,0.97936 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25856 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 29.117 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.64000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS REMARK 200 SEPARATE WHEN COMPUTING R-SYM, COMPLETENESS AND REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5.0000% POLYETHYLENE GLYCOL 3000, REMARK 280 44.0000% POLYETHYLENE GLYCOL 400, 0.1M MES PH 6.5, NANODROP', REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.25533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 106.51067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 106.51067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.25533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY PROVIDES REMARK 300 SUPPORTING EVIDENCE THAT A DIMER IS A SIGNIFICANT OLIGOMERIZATION REMARK 300 STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 106.51067 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 GLU A 4 REMARK 465 PHE A 5 REMARK 465 ASP A 6 REMARK 465 LEU A 309 REMARK 465 LYS A 310 REMARK 465 GLU A 311 REMARK 465 HIS A 312 REMARK 465 GLY A 313 REMARK 465 PHE A 314 REMARK 465 ASP A 315 REMARK 465 HIS A 316 REMARK 465 PHE A 317 REMARK 465 ALA A 318 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 7 CG CD1 CD2 REMARK 470 GLU A 221 CD OE1 OE2 REMARK 470 GLN A 224 OE1 NE2 REMARK 470 LYS A 232 CD CE NZ REMARK 470 GLN A 280 CD OE1 NE2 REMARK 470 ARG A 290 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 13 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 14 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 51 71.83 -156.18 REMARK 500 ARG A 80 -34.89 -131.14 REMARK 500 SER A 255 26.31 -146.08 REMARK 500 ASP A 284 77.58 -113.09 REMARK 500 GLN A 295 48.20 -86.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PEG A 323 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 319 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 1PE A 328 OH2 REMARK 620 2 1PE A 328 OH5 167.9 REMARK 620 3 1PE A 328 OH3 68.1 123.1 REMARK 620 4 1PE A 328 OH4 129.3 62.3 61.2 REMARK 620 5 1PE A 328 OH6 102.3 66.7 170.0 128.2 REMARK 620 6 HOH A 357 O 90.1 85.3 91.4 92.3 91.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 320 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PG4 A 327 O1 REMARK 620 2 PG4 A 327 O3 116.5 REMARK 620 3 PG4 A 327 O2 60.2 57.1 REMARK 620 4 HOH A 400 O 114.1 97.7 129.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 324 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 325 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 326 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 327 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 328 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 394140 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE THIS CONSTRUCT (1-318) WAS EXPRESSED WITH THE PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3MCQ A 1 318 UNP Q1H3U4 Q1H3U4_METFK 1 318 SEQADV 3MCQ GLY A 0 UNP Q1H3U4 EXPRESSION TAG SEQRES 1 A 319 GLY MSE ALA SER GLU PHE ASP LEU ILE GLN ARG TYR PHE SEQRES 2 A 319 ARG ARG ALA HIS PRO SER ALA VAL LEU GLY VAL GLY ASP SEQRES 3 A 319 ASP ALA ALA LEU ILE GLN PRO SER PRO GLY MSE GLU LEU SEQRES 4 A 319 ALA VAL SER ALA ASP MSE LEU VAL ALA ASN THR HIS PHE SEQRES 5 A 319 TYR PRO ASN ILE ASP PRO TRP LEU ILE GLY TRP LYS SER SEQRES 6 A 319 LEU ALA VAL ASN ILE SER ASP MSE ALA ALA MSE GLY ALA SEQRES 7 A 319 GLN PRO ARG TRP ALA THR LEU THR ILE ALA LEU PRO GLU SEQRES 8 A 319 ALA ASP GLU ASP TRP ILE SER LYS PHE ALA ALA GLY PHE SEQRES 9 A 319 PHE ALA CYS ALA ALA GLN PHE ASP ILE ALA LEU ILE GLY SEQRES 10 A 319 GLY ASP THR THR ARG GLY PRO LEU THR ILE SER VAL GLN SEQRES 11 A 319 ILE MSE GLY GLU THR PRO PRO GLY ALA SER LEU LEU ARG SEQRES 12 A 319 SER THR ALA ARG ALA ASP ASP ASP ILE TRP VAL SER GLY SEQRES 13 A 319 PRO LEU GLY ASP ALA ALA LEU ALA LEU ALA ALA ILE GLN SEQRES 14 A 319 GLY ARG TYR PRO LEU SER ASP THR GLU LEU ALA ALA CYS SEQRES 15 A 319 GLY LYS ALA LEU HIS GLN PRO GLN PRO ARG VAL VAL LEU SEQRES 16 A 319 GLY GLN ALA LEU ARG GLY LEU ALA HIS SER ALA LEU ASP SEQRES 17 A 319 ILE SER ASP GLY LEU LEU ALA ASP LEU GLY HIS ILE LEU SEQRES 18 A 319 GLU HIS SER GLN VAL GLY ALA GLU VAL TRP LEU LYS ALA SEQRES 19 A 319 ILE PRO LYS SER GLU VAL VAL SER ALA HIS SER GLN GLU SEQRES 20 A 319 VAL ALA ILE GLN LYS MSE ILE LEU SER GLY GLY ASP ASP SEQRES 21 A 319 TYR GLU LEU CYS PHE THR ALA SER THR GLN HIS ARG GLN SEQRES 22 A 319 GLN ILE ALA ASP ILE GLY ARG GLN LEU SER LEU ASP MSE SEQRES 23 A 319 ALA VAL ILE GLY ARG ILE THR ASP THR GLN GLN LEU VAL SEQRES 24 A 319 ILE HIS GLY LEU ASP ASP ALA PRO LEU THR LEU LYS GLU SEQRES 25 A 319 HIS GLY PHE ASP HIS PHE ALA MODRES 3MCQ MSE A 36 MET SELENOMETHIONINE MODRES 3MCQ MSE A 44 MET SELENOMETHIONINE MODRES 3MCQ MSE A 72 MET SELENOMETHIONINE MODRES 3MCQ MSE A 75 MET SELENOMETHIONINE MODRES 3MCQ MSE A 131 MET SELENOMETHIONINE MODRES 3MCQ MSE A 252 MET SELENOMETHIONINE MODRES 3MCQ MSE A 285 MET SELENOMETHIONINE HET MSE A 36 8 HET MSE A 44 13 HET MSE A 72 8 HET MSE A 75 8 HET MSE A 131 8 HET MSE A 252 8 HET MSE A 285 8 HET NA A 319 1 HET NA A 320 1 HET PEG A 321 7 HET PEG A 322 7 HET PEG A 323 6 HET PEG A 324 7 HET PGE A 325 10 HET PGE A 326 10 HET PG4 A 327 13 HET 1PE A 328 16 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PGE TRIETHYLENE GLYCOL HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 NA 2(NA 1+) FORMUL 4 PEG 4(C4 H10 O3) FORMUL 8 PGE 2(C6 H14 O4) FORMUL 10 PG4 C8 H18 O5 FORMUL 11 1PE C10 H22 O6 FORMUL 12 HOH *136(H2 O) HELIX 1 1 GLY A 24 LEU A 29 5 6 HELIX 2 2 ASP A 56 MSE A 75 1 20 HELIX 3 3 ASP A 92 PHE A 110 1 19 HELIX 4 4 GLY A 158 GLN A 168 1 11 HELIX 5 5 SER A 174 GLN A 187 1 14 HELIX 6 6 ARG A 191 LEU A 198 1 8 HELIX 7 7 GLY A 211 GLN A 224 1 14 HELIX 8 8 LYS A 232 ILE A 234 5 3 HELIX 9 9 SER A 237 HIS A 243 1 7 HELIX 10 10 GLU A 246 GLY A 256 1 11 HELIX 11 11 HIS A 270 LEU A 281 1 12 SHEET 1 A 5 HIS A 16 PRO A 17 0 SHEET 2 A 5 ALA A 113 ARG A 121 -1 O THR A 119 N HIS A 16 SHEET 3 A 5 GLN A 78 LEU A 88 1 N ALA A 82 O ILE A 115 SHEET 4 A 5 THR A 125 THR A 134 -1 O SER A 127 N THR A 85 SHEET 5 A 5 GLU A 37 VAL A 46 -1 N SER A 41 O ILE A 130 SHEET 1 B 7 ALA A 202 ASP A 207 0 SHEET 2 B 7 LEU A 262 SER A 267 -1 O CYS A 263 N LEU A 206 SHEET 3 B 7 ASP A 149 VAL A 153 -1 N TRP A 152 O PHE A 264 SHEET 4 B 7 ALA A 286 THR A 292 -1 O ILE A 288 N ILE A 151 SHEET 5 B 7 GLY A 226 TRP A 230 -1 N GLY A 226 O THR A 292 SHEET 6 B 7 LEU A 297 HIS A 300 1 O HIS A 300 N VAL A 229 SHEET 7 B 7 PRO A 306 LEU A 307 -1 O LEU A 307 N ILE A 299 LINK C GLY A 35 N MSE A 36 1555 1555 1.34 LINK C MSE A 36 N GLU A 37 1555 1555 1.33 LINK C ASP A 43 N MSE A 44 1555 1555 1.33 LINK C MSE A 44 N LEU A 45 1555 1555 1.33 LINK C ASP A 71 N MSE A 72 1555 1555 1.34 LINK C MSE A 72 N ALA A 73 1555 1555 1.34 LINK C ALA A 74 N MSE A 75 1555 1555 1.34 LINK C MSE A 75 N GLY A 76 1555 1555 1.33 LINK C ILE A 130 N MSE A 131 1555 1555 1.33 LINK C MSE A 131 N GLY A 132 1555 1555 1.33 LINK C LYS A 251 N MSE A 252 1555 1555 1.33 LINK C MSE A 252 N ILE A 253 1555 1555 1.34 LINK C ASP A 284 N MSE A 285 1555 1555 1.34 LINK C MSE A 285 N ALA A 286 1555 1555 1.33 LINK NA NA A 319 OH2 1PE A 328 1555 1555 2.46 LINK NA NA A 319 OH5 1PE A 328 1555 1555 2.53 LINK NA NA A 319 OH3 1PE A 328 1555 1555 2.59 LINK NA NA A 319 OH4 1PE A 328 1555 1555 2.66 LINK NA NA A 319 OH6 1PE A 328 1555 1555 2.84 LINK NA NA A 319 O HOH A 357 1555 1555 2.36 LINK NA NA A 320 O1 PG4 A 327 1555 1555 2.52 LINK NA NA A 320 O3 PG4 A 327 1555 1555 2.85 LINK NA NA A 320 O2 PG4 A 327 1555 1555 2.86 LINK NA NA A 320 O HOH A 400 1555 1555 2.55 SITE 1 AC1 2 1PE A 328 HOH A 357 SITE 1 AC2 2 PG4 A 327 HOH A 400 SITE 1 AC3 5 ILE A 167 LEU A 178 GLY A 182 HIS A 186 SITE 2 AC3 5 PGE A 326 SITE 1 AC4 2 GLN A 250 LEU A 307 SITE 1 AC5 3 ARG A 80 ASP A 111 ALA A 113 SITE 1 AC6 2 ALA A 19 VAL A 23 SITE 1 AC7 1 LYS A 183 SITE 1 AC8 6 ASP A 56 LEU A 59 GLN A 187 SER A 241 SITE 2 AC8 6 GLN A 245 PEG A 321 SITE 1 AC9 9 ARG A 10 PHE A 12 ILE A 55 LEU A 59 SITE 2 AC9 9 LYS A 63 HIS A 186 ASP A 258 NA A 320 SITE 3 AC9 9 HOH A 400 SITE 1 BC1 9 LYS A 232 ALA A 233 ILE A 234 PRO A 235 SITE 2 BC1 9 GLU A 238 SER A 241 ASP A 284 ALA A 286 SITE 3 BC1 9 NA A 319 CRYST1 59.225 59.225 159.766 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016885 0.009748 0.000000 0.00000 SCALE2 0.000000 0.019497 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006259 0.00000