HEADER TRANSPORT PROTEIN 29-MAR-10 3MD0 TITLE CRYSTAL STRUCTURE OF ARGININE/ORNITHINE TRANSPORT SYSTEM ATPASE FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS BOUND TO GDP (A RAS-LIKE GTPASE TITLE 3 SUPERFAMILY PROTEIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGININE/ORNITHINE TRANSPORT SYSTEM ATPASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RV1496; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, RAS, RAS- KEYWDS 2 LIKE GTPASE, ALLOSTERIC MODULATOR, TUBERCULOSIS, ATP-BINDING, KEYWDS 3 NUCLEOTIDE-BINDING, SSGCID, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 6 06-SEP-23 3MD0 1 REMARK SEQADV REVDAT 5 03-JUN-15 3MD0 1 JRNL REVDAT 4 11-MAR-15 3MD0 1 JRNL REMARK REVDAT 3 19-SEP-12 3MD0 1 JRNL REVDAT 2 12-SEP-12 3MD0 1 JRNL VERSN REVDAT 1 21-APR-10 3MD0 0 JRNL AUTH T.E.EDWARDS,L.BAUGH,J.BULLEN,R.O.BAYDO,P.WITTE,K.THOMPKINS, JRNL AUTH 2 I.Q.PHAN,J.ABENDROTH,M.C.CLIFTON,B.SANKARAN,W.C.VAN VOORHIS, JRNL AUTH 3 P.J.MYLER,B.L.STAKER,C.GRUNDNER,D.D.LORIMER JRNL TITL CRYSTAL STRUCTURES OF MYCOBACTERIAL MEAB AND MMAA-LIKE JRNL TITL 2 GTPASES. JRNL REF J.STRUCT.FUNCT.GENOM. V. 16 91 2015 JRNL REFN ISSN 1345-711X JRNL PMID 25832174 JRNL DOI 10.1007/S10969-015-9197-2 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, REMARK 1 AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, REMARK 1 AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, REMARK 1 AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, REMARK 1 AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, REMARK 1 AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, REMARK 1 AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER REMARK 1 TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG REMARK 1 TITL 2 TARGETS. REMARK 1 REF TUBERCULOSIS (EDINB) 2014 REMARK 1 REFN ESSN 1873-281X REMARK 1 PMID 25613812 REMARK 1 DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 15268 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 780 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1018 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.4670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2214 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 80 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.29000 REMARK 3 B22 (A**2) : -1.08000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.354 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.251 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.172 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.932 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2274 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3112 ; 1.556 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 297 ; 5.363 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;33.611 ;23.708 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 346 ;17.826 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;23.123 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 386 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1682 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1489 ; 0.794 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2369 ; 1.497 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 785 ; 2.374 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 743 ; 4.025 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 41 REMARK 3 ORIGIN FOR THE GROUP (A): 23.9394 11.6869 1.2487 REMARK 3 T TENSOR REMARK 3 T11: 0.5080 T22: 0.0798 REMARK 3 T33: 0.8422 T12: 0.1373 REMARK 3 T13: -0.0148 T23: 0.0639 REMARK 3 L TENSOR REMARK 3 L11: -2.8444 L22: 8.1511 REMARK 3 L33: -2.7993 L12: -3.7467 REMARK 3 L13: -1.9629 L23: -1.8189 REMARK 3 S TENSOR REMARK 3 S11: -0.1167 S12: -0.6157 S13: -0.4233 REMARK 3 S21: 0.0485 S22: -0.5891 S23: -0.8153 REMARK 3 S31: 1.0600 S32: -0.0997 S33: 0.7058 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 94 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2756 28.4559 -0.4965 REMARK 3 T TENSOR REMARK 3 T11: 0.2049 T22: 0.1609 REMARK 3 T33: 0.2089 T12: 0.0369 REMARK 3 T13: -0.0860 T23: -0.0797 REMARK 3 L TENSOR REMARK 3 L11: 0.6296 L22: 2.0419 REMARK 3 L33: 0.3059 L12: -0.2152 REMARK 3 L13: 0.5374 L23: -0.5363 REMARK 3 S TENSOR REMARK 3 S11: 0.2640 S12: 0.1702 S13: -0.1330 REMARK 3 S21: 0.1087 S22: 0.0008 S23: -0.0880 REMARK 3 S31: 0.1847 S32: 0.1730 S33: -0.2648 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 111 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): 26.7791 27.6837 -4.6180 REMARK 3 T TENSOR REMARK 3 T11: 0.2377 T22: 0.2621 REMARK 3 T33: 0.3227 T12: 0.3997 REMARK 3 T13: 0.1937 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 10.9249 L22: 11.5484 REMARK 3 L33: 9.8796 L12: 5.6769 REMARK 3 L13: 11.4142 L23: 10.1273 REMARK 3 S TENSOR REMARK 3 S11: 1.1556 S12: 1.7489 S13: -0.5307 REMARK 3 S21: 0.2331 S22: 0.0356 S23: -2.4314 REMARK 3 S31: 2.2250 S32: 1.7118 S33: -1.1912 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 135 A 277 REMARK 3 ORIGIN FOR THE GROUP (A): 10.1541 38.0271 -6.2725 REMARK 3 T TENSOR REMARK 3 T11: 0.1416 T22: 0.2023 REMARK 3 T33: 0.1601 T12: -0.0133 REMARK 3 T13: -0.0092 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.3676 L22: 0.9616 REMARK 3 L33: 0.9791 L12: -0.1683 REMARK 3 L13: 0.4663 L23: -0.1978 REMARK 3 S TENSOR REMARK 3 S11: -0.0296 S12: 0.1440 S13: -0.0142 REMARK 3 S21: 0.0883 S22: -0.0044 S23: -0.0606 REMARK 3 S31: 0.0579 S32: 0.0058 S33: 0.0341 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 278 A 333 REMARK 3 ORIGIN FOR THE GROUP (A): 1.8678 9.4395 -24.8454 REMARK 3 T TENSOR REMARK 3 T11: 0.2886 T22: 0.1098 REMARK 3 T33: 0.1761 T12: 0.0689 REMARK 3 T13: -0.0064 T23: -0.0517 REMARK 3 L TENSOR REMARK 3 L11: 0.0553 L22: 2.7707 REMARK 3 L33: 3.0550 L12: 0.3842 REMARK 3 L13: 0.7512 L23: 0.4195 REMARK 3 S TENSOR REMARK 3 S11: 0.2253 S12: 0.0290 S13: -0.1298 REMARK 3 S21: -0.2267 S22: -0.0375 S23: -0.2181 REMARK 3 S31: 0.3543 S32: -0.0043 S33: -0.1877 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3MD0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000058395. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15339 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 19.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.840 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.62 REMARK 200 R MERGE FOR SHELL (I) : 0.57300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2QM7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% PEG 200, 0.2 M NACL, 0.1 M NA K REMARK 280 PHOSPHATE PH 6.2, 22.0 MG/ML PROTEIN, 2 MM GDP, CRYSTAL TRACKING REMARK 280 ID 207391D3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.10000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.10000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.76500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 93.68000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.76500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 93.68000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.10000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.76500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 93.68000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.10000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.76500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 93.68000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -33.10000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 SER A 5 REMARK 465 HIS A 6 REMARK 465 ASP A 7 REMARK 465 ASP A 8 REMARK 465 ASP A 9 REMARK 465 ASP A 95 REMARK 465 PRO A 96 REMARK 465 SER A 97 REMARK 465 SER A 98 REMARK 465 THR A 99 REMARK 465 ARG A 100 REMARK 465 THR A 101 REMARK 465 GLY A 102 REMARK 465 GLY A 103 REMARK 465 SER A 104 REMARK 465 ILE A 105 REMARK 465 LEU A 106 REMARK 465 GLY A 107 REMARK 465 ASP A 108 REMARK 465 LYS A 109 REMARK 465 THR A 110 REMARK 465 PRO A 127 REMARK 465 THR A 128 REMARK 465 SER A 129 REMARK 465 GLY A 130 REMARK 465 VAL A 159 REMARK 465 GLY A 160 REMARK 465 VAL A 161 REMARK 465 ARG A 334 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 19 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 23 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 28 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 37 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 39 CG OD1 OD2 REMARK 470 ARG A 50 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 111 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 114 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 124 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 GLU A 209 CG CD OE1 OE2 REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 ARG A 215 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 219 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 248 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 273 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 293 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 301 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 302 CG CD CE NZ REMARK 470 ASP A 333 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 57 53.28 -101.03 REMARK 500 ALA A 181 46.43 -81.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 335 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYTUD.00200.A RELATED DB: TARGETDB REMARK 900 RELATED ID: 3NXS RELATED DB: PDB REMARK 900 RELATED ID: 3P32 RELATED DB: PDB REMARK 900 RELATED ID: 4GT1 RELATED DB: PDB REMARK 900 RELATED ID: 3TK1 RELATED DB: PDB DBREF 3MD0 A 1 334 UNP P63577 Y1496_MYCTU 1 334 SEQADV 3MD0 MET A -20 UNP P63577 EXPRESSION TAG SEQADV 3MD0 ALA A -19 UNP P63577 EXPRESSION TAG SEQADV 3MD0 HIS A -18 UNP P63577 EXPRESSION TAG SEQADV 3MD0 HIS A -17 UNP P63577 EXPRESSION TAG SEQADV 3MD0 HIS A -16 UNP P63577 EXPRESSION TAG SEQADV 3MD0 HIS A -15 UNP P63577 EXPRESSION TAG SEQADV 3MD0 HIS A -14 UNP P63577 EXPRESSION TAG SEQADV 3MD0 HIS A -13 UNP P63577 EXPRESSION TAG SEQADV 3MD0 MET A -12 UNP P63577 EXPRESSION TAG SEQADV 3MD0 GLY A -11 UNP P63577 EXPRESSION TAG SEQADV 3MD0 THR A -10 UNP P63577 EXPRESSION TAG SEQADV 3MD0 LEU A -9 UNP P63577 EXPRESSION TAG SEQADV 3MD0 GLU A -8 UNP P63577 EXPRESSION TAG SEQADV 3MD0 ALA A -7 UNP P63577 EXPRESSION TAG SEQADV 3MD0 GLN A -6 UNP P63577 EXPRESSION TAG SEQADV 3MD0 THR A -5 UNP P63577 EXPRESSION TAG SEQADV 3MD0 GLN A -4 UNP P63577 EXPRESSION TAG SEQADV 3MD0 GLY A -3 UNP P63577 EXPRESSION TAG SEQADV 3MD0 PRO A -2 UNP P63577 EXPRESSION TAG SEQADV 3MD0 GLY A -1 UNP P63577 EXPRESSION TAG SEQADV 3MD0 SER A 0 UNP P63577 EXPRESSION TAG SEQRES 1 A 355 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 355 ALA GLN THR GLN GLY PRO GLY SER MET MET ALA ALA SER SEQRES 3 A 355 HIS ASP ASP ASP THR VAL ASP GLY LEU ALA THR ALA VAL SEQRES 4 A 355 ARG GLY GLY ASP ARG ALA ALA LEU PRO ARG ALA ILE THR SEQRES 5 A 355 LEU VAL GLU SER THR ARG PRO ASP HIS ARG GLU GLN ALA SEQRES 6 A 355 GLN GLN LEU LEU LEU ARG LEU LEU PRO ASP SER GLY ASN SEQRES 7 A 355 ALA HIS ARG VAL GLY ILE THR GLY VAL PRO GLY VAL GLY SEQRES 8 A 355 LYS SER THR ALA ILE GLU ALA LEU GLY MET HIS LEU ILE SEQRES 9 A 355 GLU ARG GLY HIS ARG VAL ALA VAL LEU ALA VAL ASP PRO SEQRES 10 A 355 SER SER THR ARG THR GLY GLY SER ILE LEU GLY ASP LYS SEQRES 11 A 355 THR ARG MET ALA ARG LEU ALA VAL HIS PRO ASN ALA TYR SEQRES 12 A 355 ILE ARG PRO SER PRO THR SER GLY THR LEU GLY GLY VAL SEQRES 13 A 355 THR ARG ALA THR ARG GLU THR VAL VAL LEU LEU GLU ALA SEQRES 14 A 355 ALA GLY PHE ASP VAL ILE LEU ILE GLU THR VAL GLY VAL SEQRES 15 A 355 GLY GLN SER GLU VAL ALA VAL ALA ASN MET VAL ASP THR SEQRES 16 A 355 PHE VAL LEU LEU THR LEU ALA ARG THR GLY ASP GLN LEU SEQRES 17 A 355 GLN GLY ILE LYS LYS GLY VAL LEU GLU LEU ALA ASP ILE SEQRES 18 A 355 VAL VAL VAL ASN LYS ALA ASP GLY GLU HIS HIS LYS GLU SEQRES 19 A 355 ALA ARG LEU ALA ALA ARG GLU LEU SER ALA ALA ILE ARG SEQRES 20 A 355 LEU ILE TYR PRO ARG GLU ALA LEU TRP ARG PRO PRO VAL SEQRES 21 A 355 LEU THR MET SER ALA VAL GLU GLY ARG GLY LEU ALA GLU SEQRES 22 A 355 LEU TRP ASP THR VAL GLU ARG HIS ARG GLN VAL LEU THR SEQRES 23 A 355 GLY ALA GLY GLU PHE ASP ALA ARG ARG ARG ASP GLN GLN SEQRES 24 A 355 VAL ASP TRP THR TRP GLN LEU VAL ARG ASP ALA VAL LEU SEQRES 25 A 355 ASP ARG VAL TRP SER ASN PRO THR VAL ARG LYS VAL ARG SEQRES 26 A 355 SER GLU LEU GLU ARG ARG VAL ARG ALA GLY GLU LEU THR SEQRES 27 A 355 PRO ALA LEU ALA ALA GLN GLN ILE LEU GLU ILE ALA ASN SEQRES 28 A 355 LEU THR ASP ARG HET GDP A 335 28 HET UNX A 336 1 HET UNX A 337 1 HET UNX A 338 1 HET UNX A 339 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM UNX UNKNOWN ATOM OR ION FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 UNX 4(X) FORMUL 7 HOH *80(H2 O) HELIX 1 1 THR A 10 GLY A 20 1 11 HELIX 2 2 ALA A 24 SER A 35 1 12 HELIX 3 3 ARG A 37 LEU A 52 1 16 HELIX 4 4 PRO A 53 SER A 55 5 3 HELIX 5 5 GLY A 70 GLU A 84 1 15 HELIX 6 6 MET A 112 VAL A 117 1 6 HELIX 7 7 THR A 131 ALA A 149 1 19 HELIX 8 8 GLN A 163 ASN A 170 1 8 HELIX 9 9 GLY A 193 ALA A 198 5 6 HELIX 10 10 ASP A 207 GLU A 209 5 3 HELIX 11 11 HIS A 210 TYR A 229 1 20 HELIX 12 12 GLY A 249 ALA A 267 1 19 HELIX 13 13 GLY A 268 SER A 296 1 29 HELIX 14 14 ASN A 297 ALA A 313 1 17 HELIX 15 15 THR A 317 THR A 332 1 16 SHEET 1 A 7 ALA A 121 ARG A 124 0 SHEET 2 A 7 VAL A 89 ALA A 93 1 N VAL A 91 O TYR A 122 SHEET 3 A 7 VAL A 153 GLU A 157 1 O LEU A 155 N ALA A 90 SHEET 4 A 7 HIS A 59 THR A 64 1 N VAL A 61 O ILE A 154 SHEET 5 A 7 THR A 174 LEU A 180 1 O VAL A 176 N GLY A 62 SHEET 6 A 7 ILE A 200 ASN A 204 1 O VAL A 202 N LEU A 177 SHEET 7 A 7 VAL A 239 THR A 241 1 O LEU A 240 N VAL A 203 SITE 1 AC1 11 GLY A 68 GLY A 70 LYS A 71 SER A 72 SITE 2 AC1 11 THR A 73 ASN A 204 LYS A 205 ASP A 207 SITE 3 AC1 11 SER A 243 ALA A 244 VAL A 245 CRYST1 65.530 187.360 66.200 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015260 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005337 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015106 0.00000