data_3MD3 # _entry.id 3MD3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3MD3 pdb_00003md3 10.2210/pdb3md3/pdb RCSB RCSB058398 ? ? WWPDB D_1000058398 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-05-05 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' 10 4 'Structure model' '_database_2.pdbx_DOI' 11 4 'Structure model' '_database_2.pdbx_database_accession' 12 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 13 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 14 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 3MD3 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2010-03-29 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3MD1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Li, H.' 1 'Shi, H.' 2 'Zhu, Z.' 3 'Wang, H.' 4 'Niu, L.' 5 'Teng, M.' 6 # _citation.id primary _citation.title 'Crystal Structure of the First Two RRM Domains of Yeast Poly(U) Binding Protein (Pub1)' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, H.' 1 ? primary 'Shi, H.' 2 ? primary 'Zhu, Z.' 3 ? primary 'Wang, H.' 4 ? primary 'Niu, L.' 5 ? primary 'Teng, M.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1' 18793.803 1 ? ? 'N-terminal two RRM domains' ? 2 non-polymer syn 'SULFATE ION' 96.063 8 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 8 ? ? ? ? 4 water nat water 18.015 80 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'ARS consensus-binding protein ACBP-60, Poly uridylate-binding protein, Poly(U)-binding protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ QSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR INWAAK ; _entity_poly.pdbx_seq_one_letter_code_can ;RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ QSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR INWAAK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 GLYCEROL GOL 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 VAL n 1 3 LEU n 1 4 TYR n 1 5 VAL n 1 6 GLY n 1 7 ASN n 1 8 LEU n 1 9 ASP n 1 10 LYS n 1 11 ALA n 1 12 ILE n 1 13 THR n 1 14 GLU n 1 15 ASP n 1 16 ILE n 1 17 LEU n 1 18 LYS n 1 19 GLN n 1 20 TYR n 1 21 PHE n 1 22 GLN n 1 23 VAL n 1 24 GLY n 1 25 GLY n 1 26 PRO n 1 27 ILE n 1 28 ALA n 1 29 ASN n 1 30 ILE n 1 31 LYS n 1 32 ILE n 1 33 MET n 1 34 ILE n 1 35 ASP n 1 36 LYS n 1 37 ASN n 1 38 ASN n 1 39 LYS n 1 40 ASN n 1 41 VAL n 1 42 ASN n 1 43 TYR n 1 44 ALA n 1 45 PHE n 1 46 VAL n 1 47 GLU n 1 48 TYR n 1 49 HIS n 1 50 GLN n 1 51 SER n 1 52 HIS n 1 53 ASP n 1 54 ALA n 1 55 ASN n 1 56 ILE n 1 57 ALA n 1 58 LEU n 1 59 GLN n 1 60 THR n 1 61 LEU n 1 62 ASN n 1 63 GLY n 1 64 LYS n 1 65 GLN n 1 66 ILE n 1 67 GLU n 1 68 ASN n 1 69 ASN n 1 70 ILE n 1 71 VAL n 1 72 LYS n 1 73 ILE n 1 74 ASN n 1 75 TRP n 1 76 ALA n 1 77 PHE n 1 78 GLN n 1 79 SER n 1 80 GLN n 1 81 GLN n 1 82 SER n 1 83 SER n 1 84 SER n 1 85 ASP n 1 86 ASP n 1 87 THR n 1 88 PHE n 1 89 ASN n 1 90 LEU n 1 91 PHE n 1 92 VAL n 1 93 GLY n 1 94 ASP n 1 95 LEU n 1 96 ASN n 1 97 VAL n 1 98 ASN n 1 99 VAL n 1 100 ASP n 1 101 ASP n 1 102 GLU n 1 103 THR n 1 104 LEU n 1 105 ARG n 1 106 ASN n 1 107 ALA n 1 108 PHE n 1 109 LYS n 1 110 ASP n 1 111 PHE n 1 112 PRO n 1 113 SER n 1 114 TYR n 1 115 LEU n 1 116 SER n 1 117 GLY n 1 118 HIS n 1 119 VAL n 1 120 MET n 1 121 TRP n 1 122 ASP n 1 123 MET n 1 124 GLN n 1 125 THR n 1 126 GLY n 1 127 SER n 1 128 SER n 1 129 ARG n 1 130 GLY n 1 131 TYR n 1 132 GLY n 1 133 PHE n 1 134 VAL n 1 135 SER n 1 136 PHE n 1 137 THR n 1 138 SER n 1 139 GLN n 1 140 ASP n 1 141 ASP n 1 142 ALA n 1 143 GLN n 1 144 ASN n 1 145 ALA n 1 146 MET n 1 147 ASP n 1 148 SER n 1 149 MET n 1 150 GLN n 1 151 GLY n 1 152 GLN n 1 153 ASP n 1 154 LEU n 1 155 ASN n 1 156 GLY n 1 157 ARG n 1 158 PRO n 1 159 LEU n 1 160 ARG n 1 161 ILE n 1 162 ASN n 1 163 TRP n 1 164 ALA n 1 165 ALA n 1 166 LYS n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name yeast _entity_src_nat.pdbx_organism_scientific 'Saccharomyces cerevisiae' _entity_src_nat.pdbx_ncbi_taxonomy_id 4932 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 75 75 ARG ARG A . n A 1 2 VAL 2 76 76 VAL VAL A . n A 1 3 LEU 3 77 77 LEU LEU A . n A 1 4 TYR 4 78 78 TYR TYR A . n A 1 5 VAL 5 79 79 VAL VAL A . n A 1 6 GLY 6 80 80 GLY GLY A . n A 1 7 ASN 7 81 81 ASN ASN A . n A 1 8 LEU 8 82 82 LEU LEU A . n A 1 9 ASP 9 83 83 ASP ASP A . n A 1 10 LYS 10 84 84 LYS LYS A . n A 1 11 ALA 11 85 85 ALA ALA A . n A 1 12 ILE 12 86 86 ILE ILE A . n A 1 13 THR 13 87 87 THR THR A . n A 1 14 GLU 14 88 88 GLU GLU A . n A 1 15 ASP 15 89 89 ASP ASP A . n A 1 16 ILE 16 90 90 ILE ILE A . n A 1 17 LEU 17 91 91 LEU LEU A . n A 1 18 LYS 18 92 92 LYS LYS A . n A 1 19 GLN 19 93 93 GLN GLN A . n A 1 20 TYR 20 94 94 TYR TYR A . n A 1 21 PHE 21 95 95 PHE PHE A . n A 1 22 GLN 22 96 96 GLN GLN A . n A 1 23 VAL 23 97 97 VAL VAL A . n A 1 24 GLY 24 98 98 GLY GLY A . n A 1 25 GLY 25 99 99 GLY GLY A . n A 1 26 PRO 26 100 100 PRO PRO A . n A 1 27 ILE 27 101 101 ILE ILE A . n A 1 28 ALA 28 102 102 ALA ALA A . n A 1 29 ASN 29 103 103 ASN ASN A . n A 1 30 ILE 30 104 104 ILE ILE A . n A 1 31 LYS 31 105 105 LYS LYS A . n A 1 32 ILE 32 106 106 ILE ILE A . n A 1 33 MET 33 107 107 MET MET A . n A 1 34 ILE 34 108 108 ILE ILE A . n A 1 35 ASP 35 109 109 ASP ASP A . n A 1 36 LYS 36 110 110 LYS LYS A . n A 1 37 ASN 37 111 111 ASN ASN A . n A 1 38 ASN 38 112 ? ? ? A . n A 1 39 LYS 39 113 113 LYS LYS A . n A 1 40 ASN 40 114 114 ASN ASN A . n A 1 41 VAL 41 115 115 VAL VAL A . n A 1 42 ASN 42 116 116 ASN ASN A . n A 1 43 TYR 43 117 117 TYR TYR A . n A 1 44 ALA 44 118 118 ALA ALA A . n A 1 45 PHE 45 119 119 PHE PHE A . n A 1 46 VAL 46 120 120 VAL VAL A . n A 1 47 GLU 47 121 121 GLU GLU A . n A 1 48 TYR 48 122 122 TYR TYR A . n A 1 49 HIS 49 123 123 HIS HIS A . n A 1 50 GLN 50 124 124 GLN GLN A . n A 1 51 SER 51 125 125 SER SER A . n A 1 52 HIS 52 126 126 HIS HIS A . n A 1 53 ASP 53 127 127 ASP ASP A . n A 1 54 ALA 54 128 128 ALA ALA A . n A 1 55 ASN 55 129 129 ASN ASN A . n A 1 56 ILE 56 130 130 ILE ILE A . n A 1 57 ALA 57 131 131 ALA ALA A . n A 1 58 LEU 58 132 132 LEU LEU A . n A 1 59 GLN 59 133 133 GLN GLN A . n A 1 60 THR 60 134 134 THR THR A . n A 1 61 LEU 61 135 135 LEU LEU A . n A 1 62 ASN 62 136 136 ASN ASN A . n A 1 63 GLY 63 137 137 GLY GLY A . n A 1 64 LYS 64 138 138 LYS LYS A . n A 1 65 GLN 65 139 139 GLN GLN A . n A 1 66 ILE 66 140 140 ILE ILE A . n A 1 67 GLU 67 141 141 GLU GLN A . n A 1 68 ASN 68 142 142 ASN ASN A . n A 1 69 ASN 69 143 143 ASN ASN A . n A 1 70 ILE 70 144 144 ILE ILE A . n A 1 71 VAL 71 145 145 VAL VAL A . n A 1 72 LYS 72 146 146 LYS LYS A . n A 1 73 ILE 73 147 147 ILE ILE A . n A 1 74 ASN 74 148 148 ASN ASN A . n A 1 75 TRP 75 149 149 TRP TRP A . n A 1 76 ALA 76 150 150 ALA ALA A . n A 1 77 PHE 77 151 151 PHE PHE A . n A 1 78 GLN 78 152 152 GLN GLN A . n A 1 79 SER 79 153 153 SER SER A . n A 1 80 GLN 80 154 154 GLN GLN A . n A 1 81 GLN 81 155 155 GLN GLN A . n A 1 82 SER 82 156 156 SER SER A . n A 1 83 SER 83 157 157 SER SER A . n A 1 84 SER 84 158 158 SER SER A . n A 1 85 ASP 85 159 159 ASP ASP A . n A 1 86 ASP 86 160 160 ASP ASP A . n A 1 87 THR 87 161 161 THR THR A . n A 1 88 PHE 88 162 162 PHE PHE A . n A 1 89 ASN 89 163 163 ASN ASN A . n A 1 90 LEU 90 164 164 LEU LEU A . n A 1 91 PHE 91 165 165 PHE PHE A . n A 1 92 VAL 92 166 166 VAL VAL A . n A 1 93 GLY 93 167 167 GLY GLY A . n A 1 94 ASP 94 168 168 ASP ASP A . n A 1 95 LEU 95 169 169 LEU LEU A . n A 1 96 ASN 96 170 170 ASN ASN A . n A 1 97 VAL 97 171 171 VAL VAL A . n A 1 98 ASN 98 172 172 ASN ASN A . n A 1 99 VAL 99 173 173 VAL VAL A . n A 1 100 ASP 100 174 174 ASP ASP A . n A 1 101 ASP 101 175 175 ASP ASP A . n A 1 102 GLU 102 176 176 GLU GLU A . n A 1 103 THR 103 177 177 THR THR A . n A 1 104 LEU 104 178 178 LEU LEU A . n A 1 105 ARG 105 179 179 ARG ARG A . n A 1 106 ASN 106 180 180 ASN ASN A . n A 1 107 ALA 107 181 181 ALA ALA A . n A 1 108 PHE 108 182 182 PHE PHE A . n A 1 109 LYS 109 183 183 LYS LYS A . n A 1 110 ASP 110 184 184 ASP ASP A . n A 1 111 PHE 111 185 185 PHE PHE A . n A 1 112 PRO 112 186 186 PRO PRO A . n A 1 113 SER 113 187 187 SER SER A . n A 1 114 TYR 114 188 188 TYR TYR A . n A 1 115 LEU 115 189 189 LEU LEU A . n A 1 116 SER 116 190 190 SER SER A . n A 1 117 GLY 117 191 191 GLY GLY A . n A 1 118 HIS 118 192 192 HIS HIS A . n A 1 119 VAL 119 193 193 VAL VAL A . n A 1 120 MET 120 194 194 MET MET A . n A 1 121 TRP 121 195 195 TRP TRP A . n A 1 122 ASP 122 196 196 ASP ASP A . n A 1 123 MET 123 197 197 MET MET A . n A 1 124 GLN 124 198 198 GLN GLN A . n A 1 125 THR 125 199 199 THR THR A . n A 1 126 GLY 126 200 200 GLY GLY A . n A 1 127 SER 127 201 201 SER SER A . n A 1 128 SER 128 202 202 SER SER A . n A 1 129 ARG 129 203 203 ARG ARG A . n A 1 130 GLY 130 204 204 GLY GLY A . n A 1 131 TYR 131 205 205 TYR TYR A . n A 1 132 GLY 132 206 206 GLY GLY A . n A 1 133 PHE 133 207 207 PHE PHE A . n A 1 134 VAL 134 208 208 VAL VAL A . n A 1 135 SER 135 209 209 SER SER A . n A 1 136 PHE 136 210 210 PHE PHE A . n A 1 137 THR 137 211 211 THR THR A . n A 1 138 SER 138 212 212 SER SER A . n A 1 139 GLN 139 213 213 GLN GLN A . n A 1 140 ASP 140 214 214 ASP ASP A . n A 1 141 ASP 141 215 215 ASP ASP A . n A 1 142 ALA 142 216 216 ALA ALA A . n A 1 143 GLN 143 217 217 GLN GLN A . n A 1 144 ASN 144 218 218 ASN ASN A . n A 1 145 ALA 145 219 219 ALA ALA A . n A 1 146 MET 146 220 220 MET MET A . n A 1 147 ASP 147 221 221 ASP ASP A . n A 1 148 SER 148 222 222 SER SER A . n A 1 149 MET 149 223 223 MET MET A . n A 1 150 GLN 150 224 224 GLN GLN A . n A 1 151 GLY 151 225 225 GLY GLY A . n A 1 152 GLN 152 226 226 GLN GLN A . n A 1 153 ASP 153 227 227 ASP ASP A . n A 1 154 LEU 154 228 228 LEU LEU A . n A 1 155 ASN 155 229 229 ASN ASN A . n A 1 156 GLY 156 230 230 GLY GLY A . n A 1 157 ARG 157 231 231 ARG ARG A . n A 1 158 PRO 158 232 232 PRO PRO A . n A 1 159 LEU 159 233 233 LEU LEU A . n A 1 160 ARG 160 234 234 ARG ARG A . n A 1 161 ILE 161 235 235 ILE ILE A . n A 1 162 ASN 162 236 236 ASN ASN A . n A 1 163 TRP 163 237 237 TRP TRP A . n A 1 164 ALA 164 238 238 ALA ALA A . n A 1 165 ALA 165 239 239 ALA ALA A . n A 1 166 LYS 166 240 240 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 1 1 SO4 SO4 A . C 2 SO4 1 2 2 SO4 SO4 A . D 2 SO4 1 3 3 SO4 SO4 A . E 2 SO4 1 4 4 SO4 SO4 A . F 2 SO4 1 5 5 SO4 SO4 A . G 2 SO4 1 6 6 SO4 SO4 A . H 2 SO4 1 7 7 SO4 SO4 A . I 2 SO4 1 8 8 SO4 SO4 A . J 3 GOL 1 241 1 GOL GOL A . K 3 GOL 1 242 2 GOL GOL A . L 3 GOL 1 243 3 GOL GOL A . M 3 GOL 1 244 4 GOL GOL A . N 3 GOL 1 245 5 GOL GOL A . O 3 GOL 1 246 6 GOL GOL A . P 3 GOL 1 247 7 GOL GOL A . Q 3 GOL 1 248 8 GOL GOL A . R 4 HOH 1 9 9 HOH HOH A . R 4 HOH 2 10 10 HOH HOH A . R 4 HOH 3 11 11 HOH HOH A . R 4 HOH 4 12 12 HOH HOH A . R 4 HOH 5 13 13 HOH HOH A . R 4 HOH 6 14 14 HOH HOH A . R 4 HOH 7 15 15 HOH HOH A . R 4 HOH 8 16 16 HOH HOH A . R 4 HOH 9 17 17 HOH HOH A . R 4 HOH 10 18 18 HOH HOH A . R 4 HOH 11 19 19 HOH HOH A . R 4 HOH 12 20 20 HOH HOH A . R 4 HOH 13 21 21 HOH HOH A . R 4 HOH 14 22 22 HOH HOH A . R 4 HOH 15 23 23 HOH HOH A . R 4 HOH 16 24 24 HOH HOH A . R 4 HOH 17 25 25 HOH HOH A . R 4 HOH 18 26 26 HOH HOH A . R 4 HOH 19 27 27 HOH HOH A . R 4 HOH 20 29 29 HOH HOH A . R 4 HOH 21 30 30 HOH HOH A . R 4 HOH 22 31 31 HOH HOH A . R 4 HOH 23 32 32 HOH HOH A . R 4 HOH 24 33 33 HOH HOH A . R 4 HOH 25 34 34 HOH HOH A . R 4 HOH 26 35 35 HOH HOH A . R 4 HOH 27 36 36 HOH HOH A . R 4 HOH 28 37 37 HOH HOH A . R 4 HOH 29 38 38 HOH HOH A . R 4 HOH 30 39 39 HOH HOH A . R 4 HOH 31 40 40 HOH HOH A . R 4 HOH 32 41 41 HOH HOH A . R 4 HOH 33 42 42 HOH HOH A . R 4 HOH 34 43 43 HOH HOH A . R 4 HOH 35 44 44 HOH HOH A . R 4 HOH 36 45 45 HOH HOH A . R 4 HOH 37 46 46 HOH HOH A . R 4 HOH 38 47 47 HOH HOH A . R 4 HOH 39 48 48 HOH HOH A . R 4 HOH 40 49 49 HOH HOH A . R 4 HOH 41 50 50 HOH HOH A . R 4 HOH 42 51 51 HOH HOH A . R 4 HOH 43 52 52 HOH HOH A . R 4 HOH 44 53 53 HOH HOH A . R 4 HOH 45 54 54 HOH HOH A . R 4 HOH 46 55 55 HOH HOH A . R 4 HOH 47 56 56 HOH HOH A . R 4 HOH 48 57 57 HOH HOH A . R 4 HOH 49 58 58 HOH HOH A . R 4 HOH 50 59 59 HOH HOH A . R 4 HOH 51 60 60 HOH HOH A . R 4 HOH 52 61 61 HOH HOH A . R 4 HOH 53 62 62 HOH HOH A . R 4 HOH 54 63 63 HOH HOH A . R 4 HOH 55 64 64 HOH HOH A . R 4 HOH 56 65 65 HOH HOH A . R 4 HOH 57 66 66 HOH HOH A . R 4 HOH 58 67 67 HOH HOH A . R 4 HOH 59 68 68 HOH HOH A . R 4 HOH 60 69 69 HOH HOH A . R 4 HOH 61 70 70 HOH HOH A . R 4 HOH 62 71 71 HOH HOH A . R 4 HOH 63 72 72 HOH HOH A . R 4 HOH 64 73 73 HOH HOH A . R 4 HOH 65 74 74 HOH HOH A . R 4 HOH 66 249 1 HOH HOH A . R 4 HOH 67 250 2 HOH HOH A . R 4 HOH 68 251 3 HOH HOH A . R 4 HOH 69 252 4 HOH HOH A . R 4 HOH 70 253 5 HOH HOH A . R 4 HOH 71 254 6 HOH HOH A . R 4 HOH 72 255 7 HOH HOH A . R 4 HOH 73 256 8 HOH HOH A . R 4 HOH 74 257 75 HOH HOH A . R 4 HOH 75 258 76 HOH HOH A . R 4 HOH 76 259 77 HOH HOH A . R 4 HOH 77 260 78 HOH HOH A . R 4 HOH 78 261 79 HOH HOH A . R 4 HOH 79 262 80 HOH HOH A . R 4 HOH 80 263 81 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 105 ? CD ? A LYS 31 CD 2 1 Y 1 A LYS 105 ? CE ? A LYS 31 CE 3 1 Y 1 A LYS 105 ? NZ ? A LYS 31 NZ 4 1 Y 1 A ASN 111 ? CG ? A ASN 37 CG 5 1 Y 1 A ASN 111 ? OD1 ? A ASN 37 OD1 6 1 Y 1 A ASN 111 ? ND2 ? A ASN 37 ND2 7 1 Y 1 A LYS 113 ? CG ? A LYS 39 CG 8 1 Y 1 A LYS 113 ? CD ? A LYS 39 CD 9 1 Y 1 A LYS 113 ? CE ? A LYS 39 CE 10 1 Y 1 A LYS 113 ? NZ ? A LYS 39 NZ 11 1 Y 1 A GLN 124 ? OE1 ? A GLN 50 OE1 12 1 Y 1 A GLN 124 ? NE2 ? A GLN 50 NE2 # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 4 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.100 'Jan. 22, 2010' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 MAR345dtb . ? ? ? ? 'data collection' ? ? ? 7 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? # _cell.length_a 57.615 _cell.length_b 57.615 _cell.length_c 237.082 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3MD3 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.entry_id 3MD3 _symmetry.Int_Tables_number 178 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3MD3 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 0.385 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 3.02 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 59.30 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.temp 283 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '2.0M ammonium sulfate, 0.1M sodium citrate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 283K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2009-05-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH3R' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3MD3 _reflns.d_resolution_high 2.700 _reflns.d_resolution_low 50.000 _reflns.number_obs 7092 _reflns.pdbx_Rmerge_I_obs 0.117 _reflns.pdbx_netI_over_sigmaI 7.500 _reflns.pdbx_chi_squared 1.202 _reflns.pdbx_redundancy 6.000 _reflns.percent_possible_obs 99.300 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 2.70 2.80 ? ? ? 0.324 ? ? 1.026 6.20 ? 680 99.70 ? 1 2.80 2.91 ? ? ? 0.274 ? ? 0.985 6.30 ? 683 99.90 ? 2 2.91 3.04 ? ? ? 0.234 ? ? 1.017 6.30 ? 680 99.70 ? 3 3.04 3.20 ? ? ? 0.178 ? ? 1.015 6.10 ? 696 99.90 ? 4 3.20 3.40 ? ? ? 0.144 ? ? 1.223 6.20 ? 683 100.00 ? 5 3.40 3.66 ? ? ? 0.111 ? ? 1.343 6.00 ? 696 99.70 ? 6 3.66 4.03 ? ? ? 0.089 ? ? 1.369 6.00 ? 702 99.70 ? 7 4.03 4.62 ? ? ? 0.074 ? ? 1.544 5.80 ? 718 99.70 ? 8 4.62 5.81 ? ? ? 0.076 ? ? 1.267 5.70 ? 745 99.30 ? 9 5.81 50.00 ? ? ? 0.068 ? ? 1.251 5.20 ? 809 95.70 ? 10 # _refine.entry_id 3MD3 _refine.ls_d_res_high 2.700 _refine.ls_d_res_low 49.900 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.820 _refine.ls_number_reflns_obs 7062 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.218 _refine.ls_R_factor_R_work 0.216 _refine.ls_wR_factor_R_work 0.182 _refine.ls_R_factor_R_free 0.268 _refine.ls_wR_factor_R_free 0.223 _refine.ls_percent_reflns_R_free 4.700 _refine.ls_number_reflns_R_free 334 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 19.472 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.060 _refine.aniso_B[2][2] 0.060 _refine.aniso_B[3][3] -0.090 _refine.aniso_B[1][2] 0.030 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.914 _refine.correlation_coeff_Fo_to_Fc_free 0.881 _refine.overall_SU_R_Cruickshank_DPI 1.008 _refine.overall_SU_R_free 0.352 _refine.pdbx_overall_ESU_R 1.008 _refine.pdbx_overall_ESU_R_Free 0.352 _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.817 _refine.B_iso_max 65.58 _refine.B_iso_min 2.55 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1304 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 88 _refine_hist.number_atoms_solvent 80 _refine_hist.number_atoms_total 1472 _refine_hist.d_res_high 2.700 _refine_hist.d_res_low 49.900 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1484 0.007 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2003 0.939 1.948 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 174 5.699 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 80 37.457 25.500 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 228 17.576 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 5 9.950 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 202 0.070 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1118 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 860 0.279 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1379 0.517 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 624 0.392 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 623 0.694 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.700 _refine_ls_shell.d_res_low 2.770 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 494 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.306 _refine_ls_shell.R_factor_R_free 0.280 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 20 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 514 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3MD3 _struct.title 'Crystal Structure of the First Two RRM Domains of Yeast Poly(U) Binding Protein (Pub1)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3MD3 _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text 'RRM, RNP, RBD, poly(U) binding, tandem, Acetylation, Cytoplasm, Nucleus, RNA-binding, RNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? Q N N 3 ? R N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PUB1_YEAST _struct_ref.pdbx_db_accession P32588 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ QSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR INWAAK ; _struct_ref.pdbx_align_begin 75 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3MD3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 166 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P32588 _struct_ref_seq.db_align_beg 75 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 240 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 75 _struct_ref_seq.pdbx_auth_seq_align_end 240 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 4380 ? 2 MORE -17 ? 2 'SSA (A^2)' 15200 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 2 1,2 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-1/6 0.5000000000 -0.8660254038 0.0000000000 -28.8075000000 -0.8660254038 -0.5000000000 0.0000000000 -49.8960536390 0.0000000000 0.0000000000 -1.0000000000 -39.5136666667 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 13 ? GLN A 22 ? THR A 87 GLN A 96 1 ? 10 HELX_P HELX_P2 2 VAL A 23 ? GLY A 25 ? VAL A 97 GLY A 99 5 ? 3 HELX_P HELX_P3 3 GLN A 50 ? ASN A 62 ? GLN A 124 ASN A 136 1 ? 13 HELX_P HELX_P4 4 ASP A 100 ? LYS A 109 ? ASP A 174 LYS A 183 1 ? 10 HELX_P HELX_P5 5 SER A 138 ? GLN A 150 ? SER A 212 GLN A 224 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? C ? 4 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 27 ? MET A 33 ? ILE A 101 MET A 107 A 2 VAL A 41 ? TYR A 48 ? VAL A 115 TYR A 122 A 3 VAL A 2 ? ASP A 9 ? VAL A 76 ASP A 83 A 4 LYS A 72 ? TRP A 75 ? LYS A 146 TRP A 149 B 1 GLN A 65 ? ILE A 66 ? GLN A 139 ILE A 140 B 2 ASN A 69 ? ILE A 70 ? ASN A 143 ILE A 144 C 1 TYR A 114 ? TRP A 121 ? TYR A 188 TRP A 195 C 2 SER A 128 ? PHE A 136 ? SER A 202 PHE A 210 C 3 PHE A 88 ? GLY A 93 ? PHE A 162 GLY A 167 C 4 ARG A 160 ? TRP A 163 ? ARG A 234 TRP A 237 D 1 ASP A 153 ? LEU A 154 ? ASP A 227 LEU A 228 D 2 ARG A 157 ? PRO A 158 ? ARG A 231 PRO A 232 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N MET A 33 ? N MET A 107 O TYR A 43 ? O TYR A 117 A 2 3 O VAL A 46 ? O VAL A 120 N LEU A 3 ? N LEU A 77 A 3 4 N GLY A 6 ? N GLY A 80 O LYS A 72 ? O LYS A 146 B 1 2 N ILE A 66 ? N ILE A 140 O ASN A 69 ? O ASN A 143 C 1 2 N SER A 116 ? N SER A 190 O SER A 135 ? O SER A 209 C 2 3 O PHE A 136 ? O PHE A 210 N PHE A 88 ? N PHE A 162 C 3 4 N PHE A 91 ? N PHE A 165 O ASN A 162 ? O ASN A 236 D 1 2 N LEU A 154 ? N LEU A 228 O ARG A 157 ? O ARG A 231 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 1 ? 3 'BINDING SITE FOR RESIDUE SO4 A 1' AC2 Software A SO4 2 ? 5 'BINDING SITE FOR RESIDUE SO4 A 2' AC3 Software A SO4 3 ? 6 'BINDING SITE FOR RESIDUE SO4 A 3' AC4 Software A SO4 4 ? 3 'BINDING SITE FOR RESIDUE SO4 A 4' AC5 Software A SO4 5 ? 2 'BINDING SITE FOR RESIDUE SO4 A 5' AC6 Software A SO4 6 ? 4 'BINDING SITE FOR RESIDUE SO4 A 6' AC7 Software A SO4 7 ? 3 'BINDING SITE FOR RESIDUE SO4 A 7' AC8 Software A SO4 8 ? 3 'BINDING SITE FOR RESIDUE SO4 A 8' AC9 Software A GOL 241 ? 3 'BINDING SITE FOR RESIDUE GOL A 241' BC1 Software A GOL 242 ? 4 'BINDING SITE FOR RESIDUE GOL A 242' BC2 Software A GOL 243 ? 7 'BINDING SITE FOR RESIDUE GOL A 243' BC3 Software A GOL 244 ? 6 'BINDING SITE FOR RESIDUE GOL A 244' BC4 Software A GOL 246 ? 1 'BINDING SITE FOR RESIDUE GOL A 246' BC5 Software A GOL 247 ? 5 'BINDING SITE FOR RESIDUE GOL A 247' BC6 Software A GOL 248 ? 3 'BINDING SITE FOR RESIDUE GOL A 248' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ASN A 7 ? ASN A 81 . ? 1_555 ? 2 AC1 3 ASN A 69 ? ASN A 143 . ? 1_555 ? 3 AC1 3 ILE A 70 ? ILE A 144 . ? 1_555 ? 4 AC2 5 HOH R . ? HOH A 51 . ? 1_555 ? 5 AC2 5 HOH R . ? HOH A 71 . ? 10_444 ? 6 AC2 5 LYS A 72 ? LYS A 146 . ? 10_444 ? 7 AC2 5 ARG A 105 ? ARG A 179 . ? 1_555 ? 8 AC2 5 LYS A 109 ? LYS A 183 . ? 1_555 ? 9 AC3 6 HOH R . ? HOH A 18 . ? 1_555 ? 10 AC3 6 HOH R . ? HOH A 19 . ? 1_555 ? 11 AC3 6 ASN A 74 ? ASN A 148 . ? 10_444 ? 12 AC3 6 TRP A 75 ? TRP A 149 . ? 10_444 ? 13 AC3 6 SER A 82 ? SER A 156 . ? 1_555 ? 14 AC3 6 HIS A 118 ? HIS A 192 . ? 1_555 ? 15 AC4 3 HIS A 52 ? HIS A 126 . ? 1_555 ? 16 AC4 3 ASN A 55 ? ASN A 129 . ? 1_555 ? 17 AC4 3 HOH R . ? HOH A 263 . ? 1_555 ? 18 AC5 2 ARG A 157 ? ARG A 231 . ? 1_555 ? 19 AC5 2 GOL L . ? GOL A 243 . ? 1_555 ? 20 AC6 4 HOH R . ? HOH A 41 . ? 1_555 ? 21 AC6 4 ARG A 1 ? ARG A 75 . ? 1_555 ? 22 AC6 4 GLN A 50 ? GLN A 124 . ? 1_555 ? 23 AC6 4 SER A 51 ? SER A 125 . ? 1_555 ? 24 AC7 3 SER A 138 ? SER A 212 . ? 1_555 ? 25 AC7 3 GLN A 139 ? GLN A 213 . ? 1_555 ? 26 AC7 3 ASP A 140 ? ASP A 214 . ? 1_555 ? 27 AC8 3 HOH R . ? HOH A 70 . ? 1_555 ? 28 AC8 3 THR A 103 ? THR A 177 . ? 1_555 ? 29 AC8 3 ASN A 106 ? ASN A 180 . ? 1_555 ? 30 AC9 3 PHE A 45 ? PHE A 119 . ? 1_555 ? 31 AC9 3 GLN A 78 ? GLN A 152 . ? 1_555 ? 32 AC9 3 ASP A 122 ? ASP A 196 . ? 10_444 ? 33 BC1 4 GLN A 80 ? GLN A 154 . ? 1_555 ? 34 BC1 4 GLN A 81 ? GLN A 155 . ? 1_555 ? 35 BC1 4 ASP A 122 ? ASP A 196 . ? 10_444 ? 36 BC1 4 ARG A 129 ? ARG A 203 . ? 10_444 ? 37 BC2 7 SO4 F . ? SO4 A 5 . ? 1_555 ? 38 BC2 7 HOH R . ? HOH A 37 . ? 1_555 ? 39 BC2 7 HOH R . ? HOH A 38 . ? 1_555 ? 40 BC2 7 LEU A 95 ? LEU A 169 . ? 1_555 ? 41 BC2 7 GLY A 130 ? GLY A 204 . ? 1_555 ? 42 BC2 7 ARG A 157 ? ARG A 231 . ? 1_555 ? 43 BC2 7 ALA A 165 ? ALA A 239 . ? 10_444 ? 44 BC3 6 HOH R . ? HOH A 39 . ? 1_555 ? 45 BC3 6 GLN A 81 ? GLN A 155 . ? 1_555 ? 46 BC3 6 ASN A 89 ? ASN A 163 . ? 1_555 ? 47 BC3 6 ARG A 129 ? ARG A 203 . ? 10_444 ? 48 BC3 6 TYR A 131 ? TYR A 205 . ? 10_444 ? 49 BC3 6 HOH R . ? HOH A 256 . ? 1_555 ? 50 BC4 1 ASN A 55 ? ASN A 129 . ? 1_555 ? 51 BC5 5 HOH R . ? HOH A 20 . ? 10_444 ? 52 BC5 5 ASN A 62 ? ASN A 136 . ? 1_555 ? 53 BC5 5 LYS A 72 ? LYS A 146 . ? 1_555 ? 54 BC5 5 ILE A 73 ? ILE A 147 . ? 1_555 ? 55 BC5 5 ASN A 74 ? ASN A 148 . ? 1_555 ? 56 BC6 3 ARG A 157 ? ARG A 231 . ? 1_555 ? 57 BC6 3 PRO A 158 ? PRO A 232 . ? 1_555 ? 58 BC6 3 LYS A 166 ? LYS A 240 . ? 10_444 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 74 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 260 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 6_555 _pdbx_validate_symm_contact.dist 2.19 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CD _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 GLU _pdbx_validate_rmsd_bond.auth_seq_id_1 141 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OE2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLU _pdbx_validate_rmsd_bond.auth_seq_id_2 141 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.326 _pdbx_validate_rmsd_bond.bond_target_value 1.252 _pdbx_validate_rmsd_bond.bond_deviation 0.074 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.011 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 141 ? ? 63.75 -117.26 2 1 ALA A 239 ? ? -141.16 12.36 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id ASN _pdbx_unobs_or_zero_occ_residues.auth_seq_id 112 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id ASN _pdbx_unobs_or_zero_occ_residues.label_seq_id 38 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 GOL C1 C N N 123 GOL O1 O N N 124 GOL C2 C N N 125 GOL O2 O N N 126 GOL C3 C N N 127 GOL O3 O N N 128 GOL H11 H N N 129 GOL H12 H N N 130 GOL HO1 H N N 131 GOL H2 H N N 132 GOL HO2 H N N 133 GOL H31 H N N 134 GOL H32 H N N 135 GOL HO3 H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 SO4 S S N N 304 SO4 O1 O N N 305 SO4 O2 O N N 306 SO4 O3 O N N 307 SO4 O4 O N N 308 THR N N N N 309 THR CA C N S 310 THR C C N N 311 THR O O N N 312 THR CB C N R 313 THR OG1 O N N 314 THR CG2 C N N 315 THR OXT O N N 316 THR H H N N 317 THR H2 H N N 318 THR HA H N N 319 THR HB H N N 320 THR HG1 H N N 321 THR HG21 H N N 322 THR HG22 H N N 323 THR HG23 H N N 324 THR HXT H N N 325 TRP N N N N 326 TRP CA C N S 327 TRP C C N N 328 TRP O O N N 329 TRP CB C N N 330 TRP CG C Y N 331 TRP CD1 C Y N 332 TRP CD2 C Y N 333 TRP NE1 N Y N 334 TRP CE2 C Y N 335 TRP CE3 C Y N 336 TRP CZ2 C Y N 337 TRP CZ3 C Y N 338 TRP CH2 C Y N 339 TRP OXT O N N 340 TRP H H N N 341 TRP H2 H N N 342 TRP HA H N N 343 TRP HB2 H N N 344 TRP HB3 H N N 345 TRP HD1 H N N 346 TRP HE1 H N N 347 TRP HE3 H N N 348 TRP HZ2 H N N 349 TRP HZ3 H N N 350 TRP HH2 H N N 351 TRP HXT H N N 352 TYR N N N N 353 TYR CA C N S 354 TYR C C N N 355 TYR O O N N 356 TYR CB C N N 357 TYR CG C Y N 358 TYR CD1 C Y N 359 TYR CD2 C Y N 360 TYR CE1 C Y N 361 TYR CE2 C Y N 362 TYR CZ C Y N 363 TYR OH O N N 364 TYR OXT O N N 365 TYR H H N N 366 TYR H2 H N N 367 TYR HA H N N 368 TYR HB2 H N N 369 TYR HB3 H N N 370 TYR HD1 H N N 371 TYR HD2 H N N 372 TYR HE1 H N N 373 TYR HE2 H N N 374 TYR HH H N N 375 TYR HXT H N N 376 VAL N N N N 377 VAL CA C N S 378 VAL C C N N 379 VAL O O N N 380 VAL CB C N N 381 VAL CG1 C N N 382 VAL CG2 C N N 383 VAL OXT O N N 384 VAL H H N N 385 VAL H2 H N N 386 VAL HA H N N 387 VAL HB H N N 388 VAL HG11 H N N 389 VAL HG12 H N N 390 VAL HG13 H N N 391 VAL HG21 H N N 392 VAL HG22 H N N 393 VAL HG23 H N N 394 VAL HXT H N N 395 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 GOL C1 O1 sing N N 116 GOL C1 C2 sing N N 117 GOL C1 H11 sing N N 118 GOL C1 H12 sing N N 119 GOL O1 HO1 sing N N 120 GOL C2 O2 sing N N 121 GOL C2 C3 sing N N 122 GOL C2 H2 sing N N 123 GOL O2 HO2 sing N N 124 GOL C3 O3 sing N N 125 GOL C3 H31 sing N N 126 GOL C3 H32 sing N N 127 GOL O3 HO3 sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 SO4 S O1 doub N N 290 SO4 S O2 doub N N 291 SO4 S O3 sing N N 292 SO4 S O4 sing N N 293 THR N CA sing N N 294 THR N H sing N N 295 THR N H2 sing N N 296 THR CA C sing N N 297 THR CA CB sing N N 298 THR CA HA sing N N 299 THR C O doub N N 300 THR C OXT sing N N 301 THR CB OG1 sing N N 302 THR CB CG2 sing N N 303 THR CB HB sing N N 304 THR OG1 HG1 sing N N 305 THR CG2 HG21 sing N N 306 THR CG2 HG22 sing N N 307 THR CG2 HG23 sing N N 308 THR OXT HXT sing N N 309 TRP N CA sing N N 310 TRP N H sing N N 311 TRP N H2 sing N N 312 TRP CA C sing N N 313 TRP CA CB sing N N 314 TRP CA HA sing N N 315 TRP C O doub N N 316 TRP C OXT sing N N 317 TRP CB CG sing N N 318 TRP CB HB2 sing N N 319 TRP CB HB3 sing N N 320 TRP CG CD1 doub Y N 321 TRP CG CD2 sing Y N 322 TRP CD1 NE1 sing Y N 323 TRP CD1 HD1 sing N N 324 TRP CD2 CE2 doub Y N 325 TRP CD2 CE3 sing Y N 326 TRP NE1 CE2 sing Y N 327 TRP NE1 HE1 sing N N 328 TRP CE2 CZ2 sing Y N 329 TRP CE3 CZ3 doub Y N 330 TRP CE3 HE3 sing N N 331 TRP CZ2 CH2 doub Y N 332 TRP CZ2 HZ2 sing N N 333 TRP CZ3 CH2 sing Y N 334 TRP CZ3 HZ3 sing N N 335 TRP CH2 HH2 sing N N 336 TRP OXT HXT sing N N 337 TYR N CA sing N N 338 TYR N H sing N N 339 TYR N H2 sing N N 340 TYR CA C sing N N 341 TYR CA CB sing N N 342 TYR CA HA sing N N 343 TYR C O doub N N 344 TYR C OXT sing N N 345 TYR CB CG sing N N 346 TYR CB HB2 sing N N 347 TYR CB HB3 sing N N 348 TYR CG CD1 doub Y N 349 TYR CG CD2 sing Y N 350 TYR CD1 CE1 sing Y N 351 TYR CD1 HD1 sing N N 352 TYR CD2 CE2 doub Y N 353 TYR CD2 HD2 sing N N 354 TYR CE1 CZ doub Y N 355 TYR CE1 HE1 sing N N 356 TYR CE2 CZ sing Y N 357 TYR CE2 HE2 sing N N 358 TYR CZ OH sing N N 359 TYR OH HH sing N N 360 TYR OXT HXT sing N N 361 VAL N CA sing N N 362 VAL N H sing N N 363 VAL N H2 sing N N 364 VAL CA C sing N N 365 VAL CA CB sing N N 366 VAL CA HA sing N N 367 VAL C O doub N N 368 VAL C OXT sing N N 369 VAL CB CG1 sing N N 370 VAL CB CG2 sing N N 371 VAL CB HB sing N N 372 VAL CG1 HG11 sing N N 373 VAL CG1 HG12 sing N N 374 VAL CG1 HG13 sing N N 375 VAL CG2 HG21 sing N N 376 VAL CG2 HG22 sing N N 377 VAL CG2 HG23 sing N N 378 VAL OXT HXT sing N N 379 # _atom_sites.entry_id 3MD3 _atom_sites.fract_transf_matrix[1][1] 0.017357 _atom_sites.fract_transf_matrix[1][2] 0.010021 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020042 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004218 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_