HEADER CHAPERONE 31-MAR-10 3ME0 TITLE STRUCTURE OF THE E. COLI CHAPERONE PAPD IN COMPLEX WITH THE PILIN TITLE 2 DOMAIN OF THE PAPGII ADHESIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN PAPD; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PAPG PROTEIN; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: PILIN DOMAIN (UNP RESIDUES 215-336); COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: PAPD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C600; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTRC99A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 12 ORGANISM_TAXID: 562; SOURCE 13 GENE: C3583, PAPG, PAPGII; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IMMUNOGLOBULIN PILIN CHAPERONE, CHAPERONE, FIMBRIUM, IMMUNOGLOBULIN KEYWDS 2 DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR B.A.FORD,J.S.ELAM,K.W.DODSON,J.S.PINKNER,S.J.HULTGREN REVDAT 1 27-APR-11 3ME0 0 JRNL AUTH B.A.FORD,D.VERGER,J.S.ELAM,K.W.DODSON,J.S.PINKNER,G.WAKSMAN, JRNL AUTH 2 S.J.HULTGREN JRNL TITL STRUCTURE OF THE E. COLI CHAPERONE PAPD IN COMPLEX WITH THE JRNL TITL 2 PILIN DOMAIN OF THE PAPGII ADHESIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 24168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1296 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.03 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1650 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2683 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 314 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27000 REMARK 3 B22 (A**2) : 0.15000 REMARK 3 B33 (A**2) : -0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.187 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.241 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2754 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1886 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3739 ; 1.114 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4605 ; 4.076 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 344 ; 6.048 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;33.460 ;23.967 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 470 ;16.280 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;21.203 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 415 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3050 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 532 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 525 ; 0.241 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2028 ; 0.272 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1310 ; 0.193 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1478 ; 0.118 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 274 ; 0.194 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 3 ; 0.114 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.229 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 54 ; 0.334 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.212 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1717 ; 1.274 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 692 ; 0.000 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2785 ; 2.217 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1037 ; 2.934 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 953 ; 4.220 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 95 REMARK 3 ORIGIN FOR THE GROUP (A): -31.4930 -8.6860 -19.5560 REMARK 3 T TENSOR REMARK 3 T11: 0.0621 T22: 0.0355 REMARK 3 T33: 0.0216 T12: -0.0236 REMARK 3 T13: -0.0064 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 1.6925 L22: 0.9816 REMARK 3 L33: 1.2489 L12: -1.1308 REMARK 3 L13: -1.1557 L23: 0.9409 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: 0.0578 S13: -0.1782 REMARK 3 S21: -0.0119 S22: -0.0676 S23: 0.1381 REMARK 3 S31: 0.0482 S32: -0.0646 S33: 0.0761 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 96 A 122 REMARK 3 ORIGIN FOR THE GROUP (A): -24.2730 -6.6220 -17.9070 REMARK 3 T TENSOR REMARK 3 T11: 0.0621 T22: 0.0774 REMARK 3 T33: 0.0431 T12: -0.0045 REMARK 3 T13: -0.0176 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 7.3090 L22: 1.5838 REMARK 3 L33: 0.0425 L12: -2.8495 REMARK 3 L13: 0.1914 L23: 0.0584 REMARK 3 S TENSOR REMARK 3 S11: 0.0886 S12: 0.4477 S13: -0.3239 REMARK 3 S21: 0.0360 S22: -0.1259 S23: 0.0441 REMARK 3 S31: 0.0749 S32: -0.0813 S33: 0.0373 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 123 A 216 REMARK 3 ORIGIN FOR THE GROUP (A): -32.6770 17.0900 -7.5950 REMARK 3 T TENSOR REMARK 3 T11: 0.0736 T22: 0.0565 REMARK 3 T33: -0.0014 T12: -0.0073 REMARK 3 T13: -0.0044 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 1.0015 L22: 1.5890 REMARK 3 L33: 1.3093 L12: 0.5998 REMARK 3 L13: 0.3134 L23: 0.3703 REMARK 3 S TENSOR REMARK 3 S11: 0.0027 S12: -0.0923 S13: 0.0819 REMARK 3 S21: 0.0472 S22: -0.0670 S23: -0.0096 REMARK 3 S31: -0.0826 S32: -0.0271 S33: 0.0643 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 214 B 238 REMARK 3 ORIGIN FOR THE GROUP (A): -3.8390 -8.6090 -21.5280 REMARK 3 T TENSOR REMARK 3 T11: 0.0551 T22: -0.0109 REMARK 3 T33: 0.1045 T12: 0.0142 REMARK 3 T13: 0.0077 T23: -0.0755 REMARK 3 L TENSOR REMARK 3 L11: 10.6672 L22: 3.7228 REMARK 3 L33: 3.0368 L12: -5.6703 REMARK 3 L13: 3.5611 L23: -3.0373 REMARK 3 S TENSOR REMARK 3 S11: 0.0597 S12: 0.3658 S13: -0.2010 REMARK 3 S21: -0.2899 S22: -0.0945 S23: -0.1817 REMARK 3 S31: -0.0740 S32: 0.2464 S33: 0.0348 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 239 B 277 REMARK 3 ORIGIN FOR THE GROUP (A): -9.5090 -5.5860 -12.1870 REMARK 3 T TENSOR REMARK 3 T11: -0.0098 T22: 0.0314 REMARK 3 T33: 0.0493 T12: -0.0092 REMARK 3 T13: -0.0420 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 3.3418 L22: 2.0476 REMARK 3 L33: 1.3050 L12: -1.9825 REMARK 3 L13: -0.0416 L23: -0.1694 REMARK 3 S TENSOR REMARK 3 S11: 0.0342 S12: -0.3095 S13: -0.2855 REMARK 3 S21: -0.0001 S22: 0.0855 S23: 0.1034 REMARK 3 S31: -0.0473 S32: -0.0239 S33: -0.1197 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 278 B 316 REMARK 3 ORIGIN FOR THE GROUP (A): -6.0900 -3.1170 -12.4230 REMARK 3 T TENSOR REMARK 3 T11: -0.0084 T22: 0.0567 REMARK 3 T33: 0.0810 T12: 0.0072 REMARK 3 T13: -0.0206 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 3.1095 L22: 1.9291 REMARK 3 L33: 1.0836 L12: -1.8096 REMARK 3 L13: 0.1667 L23: -0.5863 REMARK 3 S TENSOR REMARK 3 S11: 0.0874 S12: -0.3221 S13: -0.0161 REMARK 3 S21: -0.0061 S22: 0.0459 S23: -0.1420 REMARK 3 S31: -0.0929 S32: 0.1567 S33: -0.1333 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 319 B 336 REMARK 3 ORIGIN FOR THE GROUP (A): -8.2580 -13.0250 -12.9130 REMARK 3 T TENSOR REMARK 3 T11: 0.0783 T22: 0.0995 REMARK 3 T33: 0.0597 T12: -0.0075 REMARK 3 T13: -0.0152 T23: 0.0602 REMARK 3 L TENSOR REMARK 3 L11: 7.7191 L22: 1.5584 REMARK 3 L33: 0.4450 L12: -3.0527 REMARK 3 L13: -1.1507 L23: 0.7649 REMARK 3 S TENSOR REMARK 3 S11: -0.2665 S12: -0.7450 S13: -0.6711 REMARK 3 S21: 0.1751 S22: 0.3773 S23: 0.2421 REMARK 3 S31: 0.0133 S32: 0.0003 S33: -0.1109 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 3ME0 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-APR-10. REMARK 100 THE RCSB ID CODE IS RCSB058427. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24169 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 28.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.000 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 12.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER EP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M SODIUM MALONATE, PH 7.3, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 51.83250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.92250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 51.83250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.92250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 393 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 217 REMARK 465 LYS A 218 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MSE A 66 CA CB CG SE CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS B 191 N HIS B 193 1.99 REMARK 500 O HOH B 335 O HOH B 336 2.07 REMARK 500 O HOH A 431 O HOH A 453 2.09 REMARK 500 O ASN B 217 O LEU B 293 2.11 REMARK 500 O HOH A 388 O HOH B 411 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 65 -155.93 -151.36 REMARK 500 ARG A 96 -125.09 43.67 REMARK 500 ASN A 101 61.54 63.71 REMARK 500 HIS B 190 52.63 -62.89 REMARK 500 HIS B 192 17.00 18.38 REMARK 500 HIS B 193 -32.73 50.35 REMARK 500 SER B 200 148.99 -38.40 REMARK 500 ASN B 214 -25.77 -140.45 REMARK 500 SER B 215 67.03 25.49 REMARK 500 ASN B 242 -69.68 -99.59 REMARK 500 HIS B 259 -132.05 55.95 REMARK 500 GLU B 296 -77.94 -81.33 REMARK 500 SER B 297 -49.05 151.35 REMARK 500 ILE B 300 -175.39 -44.24 REMARK 500 GLN B 301 146.40 172.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 MSE A 66 14.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 531 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH B 320 DISTANCE = 5.02 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WMP RELATED DB: PDB REMARK 900 STRUCTURE OF THE E. COLI CHAPERONE PAPD IN COMPLEX WITH THE REMARK 900 PILIN DOMAIN OF THE PAPGII ADHESIN, FORM 2 DBREF 3ME0 A 1 218 UNP P15319 PAPD_ECOLX 22 239 DBREF 3ME0 B 195 316 UNP Q8FDY8 Q8FDY8_ECOL6 215 336 SEQADV 3ME0 HIS B 189 UNP Q8FDY8 EXPRESSION TAG SEQADV 3ME0 HIS B 190 UNP Q8FDY8 EXPRESSION TAG SEQADV 3ME0 HIS B 191 UNP Q8FDY8 EXPRESSION TAG SEQADV 3ME0 HIS B 192 UNP Q8FDY8 EXPRESSION TAG SEQADV 3ME0 HIS B 193 UNP Q8FDY8 EXPRESSION TAG SEQADV 3ME0 HIS B 194 UNP Q8FDY8 EXPRESSION TAG SEQRES 1 A 218 ALA VAL SER LEU ASP ARG THR ARG ALA VAL PHE ASP GLY SEQRES 2 A 218 SER GLU LYS SER MSE THR LEU ASP ILE SER ASN ASP ASN SEQRES 3 A 218 LYS GLN LEU PRO TYR LEU ALA GLN ALA TRP ILE GLU ASN SEQRES 4 A 218 GLU ASN GLN GLU LYS ILE ILE THR GLY PRO VAL ILE ALA SEQRES 5 A 218 THR PRO PRO VAL GLN ARG LEU GLU PRO GLY ALA LYS SER SEQRES 6 A 218 MSE VAL ARG LEU SER THR THR PRO ASP ILE SER LYS LEU SEQRES 7 A 218 PRO GLN ASP ARG GLU SER LEU PHE TYR PHE ASN LEU ARG SEQRES 8 A 218 GLU ILE PRO PRO ARG SER GLU LYS ALA ASN VAL LEU GLN SEQRES 9 A 218 ILE ALA LEU GLN THR LYS ILE LYS LEU PHE TYR ARG PRO SEQRES 10 A 218 ALA ALA ILE LYS THR ARG PRO ASN GLU VAL TRP GLN ASP SEQRES 11 A 218 GLN LEU ILE LEU ASN LYS VAL SER GLY GLY TYR ARG ILE SEQRES 12 A 218 GLU ASN PRO THR PRO TYR TYR VAL THR VAL ILE GLY LEU SEQRES 13 A 218 GLY GLY SER GLU LYS GLN ALA GLU GLU GLY GLU PHE GLU SEQRES 14 A 218 THR VAL MSE LEU SER PRO ARG SER GLU GLN THR VAL LYS SEQRES 15 A 218 SER ALA ASN TYR ASN THR PRO TYR LEU SER TYR ILE ASN SEQRES 16 A 218 ASP TYR GLY GLY ARG PRO VAL LEU SER PHE ILE CYS ASN SEQRES 17 A 218 GLY SER ARG CYS SER VAL LYS LYS GLU LYS SEQRES 1 B 128 HIS HIS HIS HIS HIS HIS GLY GLY CYS ARG PRO SER ALA SEQRES 2 B 128 GLN SER LEU GLU ILE LYS HIS GLY ASP LEU SER ILE ASN SEQRES 3 B 128 SER ALA ASN ASN HIS TYR ALA ALA GLN THR LEU SER VAL SEQRES 4 B 128 SER CYS ASP VAL PRO ALA ASN ILE ARG PHE MET LEU LEU SEQRES 5 B 128 ARG ASN THR THR PRO THR TYR SER HIS GLY LYS LYS PHE SEQRES 6 B 128 SER VAL GLY LEU GLY HIS GLY TRP ASP SER ILE VAL SER SEQRES 7 B 128 VAL ASN GLY VAL ASP THR GLY GLU THR THR MET ARG TRP SEQRES 8 B 128 TYR LYS ALA GLY THR GLN ASN LEU THR ILE GLY SER ARG SEQRES 9 B 128 LEU TYR GLY GLU SER SER LYS ILE GLN PRO GLY VAL LEU SEQRES 10 B 128 SER GLY SER ALA THR LEU LEU MET ILE LEU PRO MODRES 3ME0 MSE A 18 MET SELENOMETHIONINE MODRES 3ME0 MSE A 66 MET SELENOMETHIONINE MODRES 3ME0 MSE A 172 MET SELENOMETHIONINE HET MSE A 18 8 HET MSE A 66 13 HET MSE A 172 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 3 HOH *314(H2 O) HELIX 1 1 PRO A 73 LEU A 78 5 6 HELIX 2 2 PRO A 117 LYS A 121 5 5 HELIX 3 3 TRP A 128 GLN A 131 5 4 HELIX 4 4 SER A 159 GLY A 166 1 8 SHEET 1 A 4 VAL A 2 LEU A 4 0 SHEET 2 A 4 SER A 17 ASN A 24 -1 O SER A 23 N SER A 3 SHEET 3 A 4 LYS A 64 THR A 71 -1 O LEU A 69 N MSE A 18 SHEET 4 A 4 VAL A 50 THR A 53 -1 N THR A 53 O ARG A 68 SHEET 1 B 7 VAL A 56 LEU A 59 0 SHEET 2 B 7 TYR A 31 ASN A 39 -1 N TYR A 31 O LEU A 59 SHEET 3 B 7 SER A 84 ILE A 93 -1 O ARG A 91 N GLN A 34 SHEET 4 B 7 VAL A 102 ARG A 116 -1 O LEU A 113 N PHE A 86 SHEET 5 B 7 SER B 306 ILE B 314 1 O MET B 313 N GLN A 108 SHEET 6 B 7 ALA B 233 ARG B 241 -1 N MET B 238 O LEU B 312 SHEET 7 B 7 GLU B 274 TRP B 279 -1 O THR B 275 N PHE B 237 SHEET 1 C 3 ARG A 8 ASP A 12 0 SHEET 2 C 3 VAL A 102 ARG A 116 1 O PHE A 114 N ALA A 9 SHEET 3 C 3 GLU B 205 LYS B 207 -1 O ILE B 206 N LEU A 103 SHEET 1 D 3 VAL A 56 LEU A 59 0 SHEET 2 D 3 TYR A 31 ASN A 39 -1 N TYR A 31 O LEU A 59 SHEET 3 D 3 LYS A 44 ILE A 45 -1 O ILE A 45 N ILE A 37 SHEET 1 E 5 LYS A 44 ILE A 45 0 SHEET 2 E 5 TYR A 31 ASN A 39 -1 N ILE A 37 O ILE A 45 SHEET 3 E 5 SER A 84 ILE A 93 -1 O ARG A 91 N GLN A 34 SHEET 4 E 5 VAL A 102 ARG A 116 -1 O LEU A 113 N PHE A 86 SHEET 5 E 5 GLU B 205 LYS B 207 -1 O ILE B 206 N LEU A 103 SHEET 1 F 8 VAL A 171 LEU A 173 0 SHEET 2 F 8 VAL A 151 GLY A 157 -1 N VAL A 151 O LEU A 173 SHEET 3 F 8 TYR A 190 ILE A 194 -1 O TYR A 190 N GLY A 157 SHEET 4 F 8 VAL A 202 ASN A 208 -1 O LEU A 203 N LEU A 191 SHEET 5 F 8 ARG A 211 VAL A 214 -1 O SER A 213 N ILE A 206 SHEET 6 F 8 ILE A 133 VAL A 137 -1 N LEU A 134 O CYS A 212 SHEET 7 F 8 GLY A 140 ASN A 145 -1 O GLU A 144 N ILE A 133 SHEET 8 F 8 SER A 177 LYS A 182 -1 O VAL A 181 N TYR A 141 SHEET 1 G 5 CYS B 197 PRO B 199 0 SHEET 2 G 5 TYR B 220 CYS B 229 -1 O SER B 228 N ARG B 198 SHEET 3 G 5 GLY B 283 GLY B 295 -1 O LEU B 287 N LEU B 225 SHEET 4 G 5 TRP B 261 VAL B 267 -1 N ASP B 262 O TYR B 294 SHEET 5 G 5 SER B 254 GLY B 258 -1 N LEU B 257 O TRP B 261 SSBOND 1 CYS A 207 CYS A 212 1555 1555 2.07 SSBOND 2 CYS B 197 CYS B 229 1555 1555 2.00 LINK C SER A 17 N MSE A 18 1555 1555 1.33 LINK C MSE A 18 N THR A 19 1555 1555 1.31 LINK C SER A 65 N MSE A 66 1555 1555 1.31 LINK C MSE A 66 N VAL A 67 1555 1555 1.30 LINK C VAL A 171 N MSE A 172 1555 1555 1.32 LINK C MSE A 172 N LEU A 173 1555 1555 1.33 CISPEP 1 GLY A 48 PRO A 49 0 7.51 CISPEP 2 THR A 53 PRO A 54 0 -8.71 CISPEP 3 ARG A 96 SER A 97 0 -3.53 CRYST1 103.665 65.845 56.525 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009646 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015187 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017691 0.00000