HEADER LIGASE 01-APR-10 3MEY TITLE CRYSTAL STRUCTURE OF CLASS II AARS HOMOLOGUE (BLL0957) COMPLEXED WITH TITLE 2 ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: BLL0957 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CLASS II AARS HOMOLOGUE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRADYRHIZOBIUM JAPONICUM; SOURCE 3 ORGANISM_TAXID: 224911; SOURCE 4 STRAIN: USDA110; SOURCE 5 GENE: BLL0957; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS AMINOACYL-TRNA SYNTHETASE, SERYL-TRNA SYNTHETASE, ZINC ION, LIGASE, KEYWDS 2 AMINO ACID:[CARRIER PROTEIN] LIGASE, BLL0957 EXPDTA X-RAY DIFFRACTION AUTHOR I.WEYGAND-DURASEVIC,M.MOCIBOB,N.IVIC,S.BILOKAPIC,T.MAIER,M.LUIC,N.BAN REVDAT 3 08-NOV-17 3MEY 1 REMARK REVDAT 2 13-OCT-10 3MEY 1 JRNL REVDAT 1 28-JUL-10 3MEY 0 JRNL AUTH M.MOCIBOB,N.IVIC,S.BILOKAPIC,T.MAIER,M.LUIC,N.BAN, JRNL AUTH 2 I.WEYGAND-DURASEVIC JRNL TITL HOMOLOGS OF AMINOACYL-TRNA SYNTHETASES ACYLATE CARRIER JRNL TITL 2 PROTEINS AND PROVIDE A LINK BETWEEN RIBOSOMAL AND JRNL TITL 3 NONRIBOSOMAL PEPTIDE SYNTHESIS JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 14585 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20663952 JRNL DOI 10.1073/PNAS.1007470107 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.BILOKAPIC,T.MAIER,D.AHEL,I.GRUIC-SOVULJ,D.SOLL, REMARK 1 AUTH 2 I.WEYGAND-DURASEVIC,N.BAN REMARK 1 TITL STRUCTURE OF THE UNUSUAL SERYL-TRNA SYNTHETASE REVEALS A REMARK 1 TITL 2 DISTINCT ZINC-DEPENDENT MODE OF SUBSTRATE RECOGNITION REMARK 1 REF EMBO J. V. 25 2498 2006 REMARK 1 REFN ISSN 0261-4189 REMARK 1 PMID 16675947 REMARK 1 DOI 10.1038/SJ.EMBOJ.7601129 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 23162 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1156 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 12 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.61 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2762 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2180 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2630 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.78 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 132 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4452 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 162 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.46700 REMARK 3 B22 (A**2) : -1.64600 REMARK 3 B33 (A**2) : 3.11300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.265 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : NULL ; NULL ; NULL REMARK 3 BOND ANGLES : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : NULL ; NULL ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.10 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3MEY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058460. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OXFORD DIFFRACTION ENHANCE ULTRA REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54056 REMARK 200 MONOCHROMATOR : NOVA OPTICAL ASSEMBLY REMARK 200 INCORPORATING GRADED MULTILAYER REMARK 200 OPTICS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : OXFORD RUBY CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO PRO REMARK 200 DATA SCALING SOFTWARE : SCALA CCP4_3.3.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23173 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7807 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.73 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, GYCEROL, PH 4.6, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 63.58300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.56650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 63.58300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.56650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ILE A 3 REMARK 465 ALA A 4 REMARK 465 VAL A 5 REMARK 465 LEU A 6 REMARK 465 PRO A 7 REMARK 465 ASN A 8 REMARK 465 SER A 9 REMARK 465 PRO A 10 REMARK 465 ASP A 11 REMARK 465 THR A 12 REMARK 465 ALA A 13 REMARK 465 PRO A 14 REMARK 465 GLN A 15 REMARK 465 ILE A 16 REMARK 465 ALA A 17 REMARK 465 PRO A 314 REMARK 465 HIS A 315 REMARK 465 VAL A 316 REMARK 465 ALA A 317 REMARK 465 ALA A 318 REMARK 465 GLY A 319 REMARK 465 ALA A 320 REMARK 465 HIS A 321 REMARK 465 GLY A 322 REMARK 465 GLU A 323 REMARK 465 GLY A 324 REMARK 465 TRP A 325 REMARK 465 ARG A 326 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ILE B 3 REMARK 465 ALA B 4 REMARK 465 VAL B 5 REMARK 465 LEU B 6 REMARK 465 PRO B 7 REMARK 465 ASN B 8 REMARK 465 SER B 9 REMARK 465 PRO B 10 REMARK 465 ASP B 11 REMARK 465 THR B 12 REMARK 465 ALA B 13 REMARK 465 PRO B 14 REMARK 465 GLN B 15 REMARK 465 ILE B 16 REMARK 465 ALA B 17 REMARK 465 ALA B 213 REMARK 465 SER B 214 REMARK 465 ASP B 215 REMARK 465 PRO B 216 REMARK 465 PHE B 217 REMARK 465 PHE B 218 REMARK 465 GLY B 219 REMARK 465 ARG B 220 REMARK 465 VAL B 221 REMARK 465 GLY B 222 REMARK 465 GLN B 223 REMARK 465 MET B 224 REMARK 465 LYS B 225 REMARK 465 ALA B 226 REMARK 465 VAL B 227 REMARK 465 SER B 228 REMARK 465 GLN B 229 REMARK 465 LYS B 230 REMARK 465 GLN B 231 REMARK 465 GLN B 232 REMARK 465 GLN B 233 REMARK 465 GLN B 313 REMARK 465 PRO B 314 REMARK 465 HIS B 315 REMARK 465 VAL B 316 REMARK 465 ALA B 317 REMARK 465 ALA B 318 REMARK 465 GLY B 319 REMARK 465 ALA B 320 REMARK 465 HIS B 321 REMARK 465 GLY B 322 REMARK 465 GLU B 323 REMARK 465 GLY B 324 REMARK 465 TRP B 325 REMARK 465 ARG B 326 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 160 67.63 -66.47 REMARK 500 ARG A 160 72.20 -68.60 REMARK 500 ARG A 258 -133.54 57.99 REMARK 500 ASP A 269 170.73 -58.48 REMARK 500 ARG B 160 65.67 -69.91 REMARK 500 ASP B 211 -159.70 -146.38 REMARK 500 LEU B 242 -52.87 -121.77 REMARK 500 ARG B 258 -142.46 60.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP B1010 O2G REMARK 620 2 ATP B1010 O1B 91.9 REMARK 620 3 HOH B 396 O 94.6 173.1 REMARK 620 4 HOH B 394 O 96.2 85.0 91.9 REMARK 620 5 HOH B 395 O 176.4 84.6 88.9 83.5 REMARK 620 6 HOH B 382 O 96.7 88.4 93.2 165.7 83.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A1010 O1B REMARK 620 2 HOH A 395 O 75.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1000 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 176 OE1 REMARK 620 2 CYS A 279 SG 91.8 REMARK 620 3 CYS A 131 SG 119.3 119.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1000 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 176 OE1 REMARK 620 2 CYS B 279 SG 90.2 REMARK 620 3 CYS B 131 SG 121.0 114.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 1010 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MF1 RELATED DB: PDB REMARK 900 RELATED ID: 3MF2 RELATED DB: PDB DBREF 3MEY A 1 326 UNP Q89VT8 Q89VT8_BRAJA 1 326 DBREF 3MEY B 1 326 UNP Q89VT8 Q89VT8_BRAJA 1 326 SEQADV 3MEY MET A -19 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY GLY A -18 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY SER A -17 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY SER A -16 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY HIS A -15 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY HIS A -14 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY HIS A -13 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY HIS A -12 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY HIS A -11 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY HIS A -10 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY SER A -9 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY SER A -8 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY GLY A -7 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY LEU A -6 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY VAL A -5 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY PRO A -4 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY ARG A -3 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY GLY A -2 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY SER A -1 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY HIS A 0 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY MET B -19 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY GLY B -18 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY SER B -17 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY SER B -16 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY HIS B -15 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY HIS B -14 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY HIS B -13 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY HIS B -12 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY HIS B -11 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY HIS B -10 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY SER B -9 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY SER B -8 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY GLY B -7 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY LEU B -6 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY VAL B -5 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY PRO B -4 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY ARG B -3 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY GLY B -2 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY SER B -1 UNP Q89VT8 EXPRESSION TAG SEQADV 3MEY HIS B 0 UNP Q89VT8 EXPRESSION TAG SEQRES 1 A 346 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 346 LEU VAL PRO ARG GLY SER HIS MET ASN ILE ALA VAL LEU SEQRES 3 A 346 PRO ASN SER PRO ASP THR ALA PRO GLN ILE ALA ASP PRO SEQRES 4 A 346 LEU ASP HIS LEU ALA ASP LYS LEU PHE HIS SER MET GLY SEQRES 5 A 346 SER ASP GLY VAL TYR ALA ARG THR ALA LEU TYR GLU SER SEQRES 6 A 346 ILE VAL GLU ARG LEU ALA ALA LEU ILE THR SER HIS ARG SEQRES 7 A 346 GLU ALA GLY THR GLU ALA LEU ARG PHE PRO PRO VAL MET SEQRES 8 A 346 SER ARG ALA GLN LEU GLU LYS SER GLY TYR LEU LYS SER SEQRES 9 A 346 PHE PRO ASN LEU LEU GLY CYS VAL CYS GLY LEU HIS GLY SEQRES 10 A 346 THR GLU ARG GLU ILE ASN ALA ALA VAL SER ARG PHE ASP SEQRES 11 A 346 ALA GLY GLY ASP TRP THR THR SER LEU SER PRO ALA ASP SEQRES 12 A 346 LEU VAL LEU SER PRO ALA ALA CYS TYR PRO VAL TYR PRO SEQRES 13 A 346 ILE ALA ALA SER ARG GLY PRO LEU PRO LYS GLY GLY LEU SEQRES 14 A 346 ARG PHE ASP VAL ALA ALA ASP CYS PHE ARG ARG GLU PRO SEQRES 15 A 346 SER LYS HIS LEU ASP ARG LEU GLN SER PHE ARG MET ARG SEQRES 16 A 346 GLU TYR VAL CYS ILE GLY THR PRO ASP ASP VAL SER ASP SEQRES 17 A 346 PHE ARG GLU ARG TRP MET VAL ARG ALA GLN ALA ILE ALA SEQRES 18 A 346 ARG ASP LEU GLY LEU THR PHE ARG VAL ASP TYR ALA SER SEQRES 19 A 346 ASP PRO PHE PHE GLY ARG VAL GLY GLN MET LYS ALA VAL SEQRES 20 A 346 SER GLN LYS GLN GLN GLN LEU LYS PHE GLU LEU LEU ILE SEQRES 21 A 346 PRO LEU ARG SER GLU GLU GLN PRO THR ALA CYS MET SER SEQRES 22 A 346 PHE ASN TYR HIS ARG GLU HIS PHE GLY THR THR TRP GLY SEQRES 23 A 346 ILE GLN ASP ALA ASN GLY GLU PRO ALA HIS THR GLY CYS SEQRES 24 A 346 VAL ALA PHE GLY MET ASP ARG LEU ALA VAL ALA MET PHE SEQRES 25 A 346 HIS THR HIS GLY THR ASP LEU SER ALA TRP PRO ALA LYS SEQRES 26 A 346 VAL ARG ASP ILE LEU GLY LEU GLN PRO HIS VAL ALA ALA SEQRES 27 A 346 GLY ALA HIS GLY GLU GLY TRP ARG SEQRES 1 B 346 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 346 LEU VAL PRO ARG GLY SER HIS MET ASN ILE ALA VAL LEU SEQRES 3 B 346 PRO ASN SER PRO ASP THR ALA PRO GLN ILE ALA ASP PRO SEQRES 4 B 346 LEU ASP HIS LEU ALA ASP LYS LEU PHE HIS SER MET GLY SEQRES 5 B 346 SER ASP GLY VAL TYR ALA ARG THR ALA LEU TYR GLU SER SEQRES 6 B 346 ILE VAL GLU ARG LEU ALA ALA LEU ILE THR SER HIS ARG SEQRES 7 B 346 GLU ALA GLY THR GLU ALA LEU ARG PHE PRO PRO VAL MET SEQRES 8 B 346 SER ARG ALA GLN LEU GLU LYS SER GLY TYR LEU LYS SER SEQRES 9 B 346 PHE PRO ASN LEU LEU GLY CYS VAL CYS GLY LEU HIS GLY SEQRES 10 B 346 THR GLU ARG GLU ILE ASN ALA ALA VAL SER ARG PHE ASP SEQRES 11 B 346 ALA GLY GLY ASP TRP THR THR SER LEU SER PRO ALA ASP SEQRES 12 B 346 LEU VAL LEU SER PRO ALA ALA CYS TYR PRO VAL TYR PRO SEQRES 13 B 346 ILE ALA ALA SER ARG GLY PRO LEU PRO LYS GLY GLY LEU SEQRES 14 B 346 ARG PHE ASP VAL ALA ALA ASP CYS PHE ARG ARG GLU PRO SEQRES 15 B 346 SER LYS HIS LEU ASP ARG LEU GLN SER PHE ARG MET ARG SEQRES 16 B 346 GLU TYR VAL CYS ILE GLY THR PRO ASP ASP VAL SER ASP SEQRES 17 B 346 PHE ARG GLU ARG TRP MET VAL ARG ALA GLN ALA ILE ALA SEQRES 18 B 346 ARG ASP LEU GLY LEU THR PHE ARG VAL ASP TYR ALA SER SEQRES 19 B 346 ASP PRO PHE PHE GLY ARG VAL GLY GLN MET LYS ALA VAL SEQRES 20 B 346 SER GLN LYS GLN GLN GLN LEU LYS PHE GLU LEU LEU ILE SEQRES 21 B 346 PRO LEU ARG SER GLU GLU GLN PRO THR ALA CYS MET SER SEQRES 22 B 346 PHE ASN TYR HIS ARG GLU HIS PHE GLY THR THR TRP GLY SEQRES 23 B 346 ILE GLN ASP ALA ASN GLY GLU PRO ALA HIS THR GLY CYS SEQRES 24 B 346 VAL ALA PHE GLY MET ASP ARG LEU ALA VAL ALA MET PHE SEQRES 25 B 346 HIS THR HIS GLY THR ASP LEU SER ALA TRP PRO ALA LYS SEQRES 26 B 346 VAL ARG ASP ILE LEU GLY LEU GLN PRO HIS VAL ALA ALA SEQRES 27 B 346 GLY ALA HIS GLY GLU GLY TRP ARG HET ZN A1000 1 HET MG A1001 1 HET ATP A1010 31 HET ZN B1000 1 HET MG B1001 1 HET ATP B1010 31 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MG 2(MG 2+) FORMUL 5 ATP 2(C10 H16 N5 O13 P3) FORMUL 9 HOH *162(H2 O) HELIX 1 1 LEU A 20 HIS A 22 5 3 HELIX 2 2 LEU A 23 LEU A 27 1 5 HELIX 3 3 THR A 40 SER A 56 1 17 HELIX 4 4 ARG A 73 SER A 79 1 7 HELIX 5 5 GLY A 80 PHE A 85 1 6 HELIX 6 6 THR A 98 ALA A 111 1 14 HELIX 7 7 ASP A 114 LEU A 119 5 6 HELIX 8 8 PRO A 133 SER A 140 1 8 HELIX 9 9 THR A 182 LEU A 204 1 23 HELIX 10 10 PHE A 218 GLN A 233 1 16 HELIX 11 11 GLU A 259 GLY A 266 1 8 HELIX 12 12 MET A 284 GLY A 296 1 13 HELIX 13 13 ASP A 298 TRP A 302 5 5 HELIX 14 14 PRO A 303 LEU A 310 1 8 HELIX 15 15 LEU B 20 HIS B 22 5 3 HELIX 16 16 LEU B 23 LEU B 27 1 5 HELIX 17 17 THR B 40 HIS B 57 1 18 HELIX 18 18 ARG B 73 SER B 79 1 7 HELIX 19 19 GLY B 80 PHE B 85 1 6 HELIX 20 20 THR B 98 ALA B 111 1 14 HELIX 21 21 ASP B 114 LEU B 119 5 6 HELIX 22 22 PRO B 133 SER B 140 1 8 HELIX 23 23 THR B 182 LEU B 204 1 23 HELIX 24 24 GLU B 259 GLY B 266 1 8 HELIX 25 25 MET B 284 GLY B 296 1 13 HELIX 26 26 ASP B 298 TRP B 302 5 5 HELIX 27 27 PRO B 303 LEU B 310 1 8 SHEET 1 A 2 PHE A 28 SER A 33 0 SHEET 2 A 2 VAL A 36 ARG A 39 -1 O ALA A 38 N HIS A 29 SHEET 1 B 7 THR A 62 ARG A 66 0 SHEET 2 B 7 LEU A 149 PHE A 158 1 O ASP A 152 N LEU A 65 SHEET 3 B 7 SER A 171 GLY A 181 -1 O GLU A 176 N VAL A 153 SHEET 4 B 7 HIS A 276 GLY A 283 -1 O HIS A 276 N GLY A 181 SHEET 5 B 7 THR A 249 ARG A 258 -1 N ASN A 255 O CYS A 279 SHEET 6 B 7 LYS A 235 ILE A 240 -1 N ILE A 240 O THR A 249 SHEET 7 B 7 ARG A 209 TYR A 212 -1 N ARG A 209 O LEU A 239 SHEET 1 C 6 VAL A 70 SER A 72 0 SHEET 2 C 6 SER A 120 LEU A 126 -1 O VAL A 125 N MET A 71 SHEET 3 C 6 GLY A 90 GLY A 94 -1 N VAL A 92 O ALA A 122 SHEET 4 C 6 GLY B 90 GLY B 94 -1 O CYS B 91 N CYS A 93 SHEET 5 C 6 SER B 120 LEU B 126 -1 O ALA B 122 N VAL B 92 SHEET 6 C 6 VAL B 70 SER B 72 -1 N MET B 71 O VAL B 125 SHEET 1 D 2 PHE B 28 SER B 33 0 SHEET 2 D 2 VAL B 36 ARG B 39 -1 O ALA B 38 N HIS B 29 SHEET 1 E 7 THR B 62 ARG B 66 0 SHEET 2 E 7 LEU B 149 PHE B 158 1 O ASP B 152 N LEU B 65 SHEET 3 E 7 SER B 171 GLY B 181 -1 O GLU B 176 N VAL B 153 SHEET 4 E 7 HIS B 276 GLY B 283 -1 O HIS B 276 N GLY B 181 SHEET 5 E 7 THR B 249 TYR B 256 -1 N SER B 253 O ALA B 281 SHEET 6 E 7 LYS B 235 ILE B 240 -1 N ILE B 240 O THR B 249 SHEET 7 E 7 ARG B 209 ASP B 211 -1 N ARG B 209 O LEU B 239 SSBOND 1 CYS A 93 CYS B 93 1555 1555 2.03 LINK MG MG B1001 O2G ATP B1010 1555 1555 1.95 LINK MG MG B1001 O1B ATP B1010 1555 1555 2.00 LINK MG MG B1001 O HOH B 396 1555 1555 2.06 LINK MG MG A1001 O1B ATP A1010 1555 1555 2.08 LINK MG MG B1001 O HOH B 394 1555 1555 2.15 LINK OE1 GLU A 176 ZN ZN A1000 1555 1555 2.22 LINK OE1 GLU B 176 ZN ZN B1000 1555 1555 2.24 LINK MG MG B1001 O HOH B 395 1555 1555 2.32 LINK MG MG A1001 O HOH A 395 1555 1555 2.33 LINK MG MG B1001 O HOH B 382 1555 1555 2.35 LINK SG CYS B 279 ZN ZN B1000 1555 1555 2.50 LINK SG CYS A 279 ZN ZN A1000 1555 1555 2.50 LINK SG CYS A 131 ZN ZN A1000 1555 1555 2.51 LINK SG CYS B 131 ZN ZN B1000 1555 1555 2.53 SITE 1 AC1 4 CYS A 131 GLU A 176 CYS A 279 HOH A 401 SITE 1 AC2 5 LEU A 88 ARG A 159 PRO A 216 HOH A 395 SITE 2 AC2 5 ATP A1010 SITE 1 AC3 21 ARG A 159 GLU A 161 ASP A 167 ARG A 168 SITE 2 AC3 21 LEU A 169 PHE A 172 MET A 174 PRO A 216 SITE 3 AC3 21 LYS A 235 GLU A 237 ALA A 250 CYS A 251 SITE 4 AC3 21 SER A 253 ALA A 281 GLY A 283 ARG A 286 SITE 5 AC3 21 HOH A 332 HOH A 378 HOH A 395 HOH A 403 SITE 6 AC3 21 MG A1001 SITE 1 AC4 5 CYS B 131 GLU B 176 CYS B 279 HOH B 343 SITE 2 AC4 5 HOH B 393 SITE 1 AC5 6 ARG B 159 HOH B 382 HOH B 394 HOH B 395 SITE 2 AC5 6 HOH B 396 ATP B1010 SITE 1 AC6 25 ARG B 159 GLU B 161 ARG B 168 LEU B 169 SITE 2 AC6 25 PHE B 172 MET B 174 LYS B 235 GLU B 237 SITE 3 AC6 25 ALA B 250 CYS B 251 MET B 252 SER B 253 SITE 4 AC6 25 ASN B 255 ALA B 281 GLY B 283 ARG B 286 SITE 5 AC6 25 HOH B 344 HOH B 348 HOH B 358 HOH B 381 SITE 6 AC6 25 HOH B 382 HOH B 394 HOH B 395 HOH B 396 SITE 7 AC6 25 MG B1001 CRYST1 127.166 101.133 50.414 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007864 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009888 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019836 0.00000