HEADER SUGAR BINDING PROTEIN 01-APR-10 3MEZ TITLE X-RAY STRUCTURAL ANALYSIS OF A MANNOSE SPECIFIC LECTIN FROM DUTCH TITLE 2 CROCUS (CROCUS VERNUS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNOSE-SPECIFIC LECTIN 3 CHAIN 1; COMPND 3 CHAIN: A, C; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: MANNOSE-SPECIFIC LECTIN 3 CHAIN 2; COMPND 6 CHAIN: B, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CROCUS VERNUS; SOURCE 3 ORGANISM_COMMON: DUTCH CROCUS; SOURCE 4 ORGANISM_TAXID: 87752; SOURCE 5 OTHER_DETAILS: BULB; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: CROCUS VERNUS; SOURCE 8 ORGANISM_COMMON: DUTCH CROCUS; SOURCE 9 ORGANISM_TAXID: 87752; SOURCE 10 OTHER_DETAILS: BULB KEYWDS LECTIN, CROCUS, HETEROTETRAMER, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.AKREM,A.MEYER,M.PERBANDT,W.VOELTER,F.BUCK,C.BETZEL REVDAT 3 01-NOV-23 3MEZ 1 REMARK REVDAT 2 25-DEC-19 3MEZ 1 REMARK REVDAT 1 22-JUN-11 3MEZ 0 JRNL AUTH A.AKREM JRNL TITL X-RAY STRUCTURAL ANALYSIS OF A MANNOSE SPECIFIC LECTIN FROM JRNL TITL 2 DUTCH CROCUS (CROCUS VERNUS) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 85.5 REMARK 3 NUMBER OF REFLECTIONS : 30977 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1647 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2255 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3428 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 295 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.22000 REMARK 3 B22 (A**2) : -1.42000 REMARK 3 B33 (A**2) : 0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.180 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.163 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.405 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3529 ; 0.023 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4797 ; 2.142 ; 1.928 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 442 ; 8.308 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 174 ;30.795 ;24.483 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 528 ;18.649 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;22.346 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 542 ; 0.264 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2718 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2216 ; 1.382 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3546 ; 2.306 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1313 ; 3.572 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1251 ; 4.911 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MEZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058461. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8123 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48106 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.840 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: PDB ENTRY 1MSA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4M SODIUM FORMATE, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 24.21100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.07700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.21100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.07700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA C 111 REMARK 465 ALA D 113 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 75 O HOH B 684 1.76 REMARK 500 C SER D 42 N THR D 44 2.12 REMARK 500 O SER D 42 N THR D 44 2.16 REMARK 500 O GLU C 20 O HOH C 138 2.16 REMARK 500 NE2 GLN A 16 O HOH A 127 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 59 CB CYS B 59 SG -0.100 REMARK 500 VAL B 92 CB VAL B 92 CG2 -0.136 REMARK 500 TYR C 76 CE2 TYR C 76 CD2 -0.111 REMARK 500 GLU D 88 CB GLU D 88 CG -0.131 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 28 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 ARG D 4 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 LYS D 43 N - CA - C ANGL. DEV. = -19.9 DEGREES REMARK 500 LEU D 93 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 20 -120.65 54.20 REMARK 500 CYS A 30 -0.23 78.94 REMARK 500 ALA A 38 22.65 -145.43 REMARK 500 SER A 69 -100.72 -67.15 REMARK 500 SER B 12 -21.11 90.01 REMARK 500 ASN B 18 9.10 80.53 REMARK 500 ARG B 24 -128.13 52.61 REMARK 500 CYS B 34 5.68 80.94 REMARK 500 SER B 42 72.57 11.73 REMARK 500 LYS B 43 -17.94 105.98 REMARK 500 VAL B 85 89.30 -163.79 REMARK 500 GLU C 20 -123.08 54.26 REMARK 500 CYS C 30 0.25 80.04 REMARK 500 ALA C 38 -147.04 176.53 REMARK 500 SER D 12 -19.15 88.83 REMARK 500 ARG D 24 -127.42 54.22 REMARK 500 CYS D 34 3.89 80.76 REMARK 500 LYS D 43 44.53 -78.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 69 ASN A 70 -31.56 REMARK 500 GLY D 41 SER D 42 -36.31 REMARK 500 THR D 44 ASN D 45 -148.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 112 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 112 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT C 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT D 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT D 115 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MSA RELATED DB: PDB REMARK 900 MANNOSE SPECIFIC LECTIN FROM GALANTHUS NIVALIS REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHOR WILL CONTACT UNIPROT FOR MODIFICATION ON DATABASE P86626 REMARK 999 (LEC3_CROVR). DBREF 3MEZ A 1 110 UNP P86626 LEC3_CROVR 1 110 DBREF 3MEZ B 1 112 UNP P86626 LEC3_CROVR 111 222 DBREF 3MEZ C 1 110 UNP P86626 LEC3_CROVR 1 110 DBREF 3MEZ D 1 112 UNP P86626 LEC3_CROVR 111 222 SEQADV 3MEZ HIS A 12 UNP P86626 SER 12 SEE REMARK 999 SEQADV 3MEZ ASP A 51 UNP P86626 ASN 51 SEE REMARK 999 SEQADV 3MEZ ARG A 84 UNP P86626 GLN 84 SEE REMARK 999 SEQADV 3MEZ THR A 90 UNP P86626 VAL 90 SEE REMARK 999 SEQADV 3MEZ ALA A 111 UNP P86626 SEE REMARK 999 SEQADV 3MEZ MET B 15 UNP P86626 GLN 125 SEE REMARK 999 SEQADV 3MEZ SER B 42 UNP P86626 GLY 152 SEE REMARK 999 SEQADV 3MEZ LYS B 43 UNP P86626 GLN 153 SEE REMARK 999 SEQADV 3MEZ VAL B 47 UNP P86626 SER 157 SEE REMARK 999 SEQADV 3MEZ GLU B 68 UNP P86626 GLN 178 SEE REMARK 999 SEQADV 3MEZ THR B 78 UNP P86626 SER 188 SEE REMARK 999 SEQADV 3MEZ ALA B 113 UNP P86626 SEE REMARK 999 SEQADV 3MEZ HIS C 12 UNP P86626 SER 12 SEE REMARK 999 SEQADV 3MEZ ASP C 51 UNP P86626 ASN 51 SEE REMARK 999 SEQADV 3MEZ ARG C 84 UNP P86626 GLN 84 SEE REMARK 999 SEQADV 3MEZ THR C 90 UNP P86626 VAL 90 SEE REMARK 999 SEQADV 3MEZ ALA C 111 UNP P86626 SEE REMARK 999 SEQADV 3MEZ MET D 15 UNP P86626 GLN 125 SEE REMARK 999 SEQADV 3MEZ SER D 42 UNP P86626 GLY 152 SEE REMARK 999 SEQADV 3MEZ LYS D 43 UNP P86626 GLN 153 SEE REMARK 999 SEQADV 3MEZ VAL D 47 UNP P86626 SER 157 SEE REMARK 999 SEQADV 3MEZ GLU D 68 UNP P86626 GLN 178 SEE REMARK 999 SEQADV 3MEZ THR D 78 UNP P86626 SER 188 SEE REMARK 999 SEQADV 3MEZ ALA D 113 UNP P86626 SEE REMARK 999 SEQRES 1 A 111 ASP ASN ASN VAL LEU LEU THR GLY ASP VAL ILE HIS THR SEQRES 2 A 111 ASP ASN GLN LEU SER TYR GLU SER ALA ALA PHE VAL MET SEQRES 3 A 111 GLN GLY ASP CYS ASN LEU VAL LEU TYR ASN GLU ALA GLY SEQRES 4 A 111 GLY PHE GLN SER ASN THR HIS GLY ARG GLY VAL ASP CYS SEQRES 5 A 111 THR LEU ARG LEU ASN ASN ARG GLY GLN LEU GLU ILE HIS SEQRES 6 A 111 SER ALA ASN SER ASN THR PRO VAL TRP VAL TYR PRO ARG SEQRES 7 A 111 SER VAL ASN THR VAL ARG GLY ASN TYR ALA ALA THR LEU SEQRES 8 A 111 GLY PRO ASP GLN HIS VAL THR ILE TYR GLY PRO ALA ILE SEQRES 9 A 111 TRP SER THR PRO ALA ALA ALA SEQRES 1 B 113 ASN ILE PRO ARG VAL ARG ASN VAL LEU PHE SER SER GLN SEQRES 2 B 113 VAL MET TYR ASP ASN ALA GLN LEU ALA THR ARG ASP TYR SEQRES 3 B 113 SER LEU VAL MET ARG ASP ASP CYS ASN LEU VAL LEU THR SEQRES 4 B 113 LYS GLY SER LYS THR ASN ILE VAL TRP GLU SER GLY THR SEQRES 5 B 113 SER GLY ARG GLY GLN HIS CYS PHE MET ARG LEU GLY HIS SEQRES 6 B 113 SER GLY GLU LEU ASP ILE THR ASP ASP ARG LEU ASN THR SEQRES 7 B 113 VAL PHE VAL SER ASN THR VAL GLY GLN GLU GLY ASP TYR SEQRES 8 B 113 VAL LEU ILE LEU GLN ILE ASN GLY GLN ALA VAL VAL TYR SEQRES 9 B 113 GLY PRO ALA VAL TRP SER THR ALA ALA SEQRES 1 C 111 ASP ASN ASN VAL LEU LEU THR GLY ASP VAL ILE HIS THR SEQRES 2 C 111 ASP ASN GLN LEU SER TYR GLU SER ALA ALA PHE VAL MET SEQRES 3 C 111 GLN GLY ASP CYS ASN LEU VAL LEU TYR ASN GLU ALA GLY SEQRES 4 C 111 GLY PHE GLN SER ASN THR HIS GLY ARG GLY VAL ASP CYS SEQRES 5 C 111 THR LEU ARG LEU ASN ASN ARG GLY GLN LEU GLU ILE HIS SEQRES 6 C 111 SER ALA ASN SER ASN THR PRO VAL TRP VAL TYR PRO ARG SEQRES 7 C 111 SER VAL ASN THR VAL ARG GLY ASN TYR ALA ALA THR LEU SEQRES 8 C 111 GLY PRO ASP GLN HIS VAL THR ILE TYR GLY PRO ALA ILE SEQRES 9 C 111 TRP SER THR PRO ALA ALA ALA SEQRES 1 D 113 ASN ILE PRO ARG VAL ARG ASN VAL LEU PHE SER SER GLN SEQRES 2 D 113 VAL MET TYR ASP ASN ALA GLN LEU ALA THR ARG ASP TYR SEQRES 3 D 113 SER LEU VAL MET ARG ASP ASP CYS ASN LEU VAL LEU THR SEQRES 4 D 113 LYS GLY SER LYS THR ASN ILE VAL TRP GLU SER GLY THR SEQRES 5 D 113 SER GLY ARG GLY GLN HIS CYS PHE MET ARG LEU GLY HIS SEQRES 6 D 113 SER GLY GLU LEU ASP ILE THR ASP ASP ARG LEU ASN THR SEQRES 7 D 113 VAL PHE VAL SER ASN THR VAL GLY GLN GLU GLY ASP TYR SEQRES 8 D 113 VAL LEU ILE LEU GLN ILE ASN GLY GLN ALA VAL VAL TYR SEQRES 9 D 113 GLY PRO ALA VAL TRP SER THR ALA ALA HET GOL A 112 6 HET GOL A 113 6 HET FMT A 114 3 HET FMT A 115 3 HET FMT B 114 3 HET FMT B 115 3 HET FMT B 116 3 HET GOL C 112 6 HET FMT C 113 3 HET FMT D 114 3 HET FMT D 115 3 HETNAM GOL GLYCEROL HETNAM FMT FORMIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 3(C3 H8 O3) FORMUL 7 FMT 8(C H2 O2) FORMUL 16 HOH *295(H2 O) SHEET 1 A 4 VAL A 4 LEU A 6 0 SHEET 2 A 4 ALA A 88 LEU A 91 -1 O ALA A 89 N LEU A 5 SHEET 3 A 4 VAL A 97 TYR A 100 -1 O TYR A 100 N ALA A 88 SHEET 4 A 4 ALA B 107 SER B 110 -1 O VAL B 108 N ILE A 99 SHEET 1 B 4 VAL A 10 ILE A 11 0 SHEET 2 B 4 THR A 53 LEU A 56 -1 O LEU A 54 N ILE A 11 SHEET 3 B 4 LEU A 62 HIS A 65 -1 O GLU A 63 N ARG A 55 SHEET 4 B 4 TRP A 74 TYR A 76 -1 O TYR A 76 N LEU A 62 SHEET 1 C 4 GLN A 16 TYR A 19 0 SHEET 2 C 4 ALA A 22 MET A 26 -1 O ALA A 22 N TYR A 19 SHEET 3 C 4 LEU A 32 TYR A 35 -1 O TYR A 35 N ALA A 23 SHEET 4 C 4 PHE A 41 GLN A 42 -1 O PHE A 41 N LEU A 34 SHEET 1 D 4 ALA A 103 SER A 106 0 SHEET 2 D 4 ALA B 101 TYR B 104 -1 O VAL B 103 N ILE A 104 SHEET 3 D 4 VAL B 92 LEU B 95 -1 N ILE B 94 O VAL B 102 SHEET 4 D 4 VAL B 8 PHE B 10 -1 N LEU B 9 O LEU B 93 SHEET 1 E 4 VAL B 14 TYR B 16 0 SHEET 2 E 4 PHE B 60 LEU B 63 -1 O MET B 61 N MET B 15 SHEET 3 E 4 LEU B 69 THR B 72 -1 O THR B 72 N PHE B 60 SHEET 4 E 4 THR B 78 VAL B 81 -1 O VAL B 79 N ILE B 71 SHEET 1 F 4 GLN B 20 THR B 23 0 SHEET 2 F 4 TYR B 26 MET B 30 -1 O LEU B 28 N LEU B 21 SHEET 3 F 4 LEU B 36 LYS B 40 -1 O VAL B 37 N VAL B 29 SHEET 4 F 4 ASN B 45 GLU B 49 -1 O TRP B 48 N LEU B 38 SHEET 1 G 4 VAL C 4 LEU C 6 0 SHEET 2 G 4 ALA C 88 LEU C 91 -1 O ALA C 89 N LEU C 5 SHEET 3 G 4 VAL C 97 TYR C 100 -1 O TYR C 100 N ALA C 88 SHEET 4 G 4 ALA D 107 SER D 110 -1 O VAL D 108 N ILE C 99 SHEET 1 H 4 VAL C 10 ILE C 11 0 SHEET 2 H 4 THR C 53 LEU C 56 -1 O LEU C 54 N ILE C 11 SHEET 3 H 4 LEU C 62 HIS C 65 -1 O HIS C 65 N THR C 53 SHEET 4 H 4 TRP C 74 TYR C 76 -1 O TRP C 74 N ILE C 64 SHEET 1 I 4 GLN C 16 TYR C 19 0 SHEET 2 I 4 ALA C 22 MET C 26 -1 O PHE C 24 N LEU C 17 SHEET 3 I 4 LEU C 32 TYR C 35 -1 O TYR C 35 N ALA C 23 SHEET 4 I 4 PHE C 41 GLN C 42 -1 O PHE C 41 N LEU C 34 SHEET 1 J 4 ALA C 103 SER C 106 0 SHEET 2 J 4 ALA D 101 TYR D 104 -1 O VAL D 103 N TRP C 105 SHEET 3 J 4 VAL D 92 LEU D 95 -1 N VAL D 92 O TYR D 104 SHEET 4 J 4 VAL D 8 PHE D 10 -1 N LEU D 9 O LEU D 93 SHEET 1 K 4 VAL D 14 TYR D 16 0 SHEET 2 K 4 PHE D 60 LEU D 63 -1 O MET D 61 N MET D 15 SHEET 3 K 4 LEU D 69 THR D 72 -1 O THR D 72 N PHE D 60 SHEET 4 K 4 THR D 78 VAL D 81 -1 O PHE D 80 N ILE D 71 SHEET 1 L 4 GLN D 20 THR D 23 0 SHEET 2 L 4 TYR D 26 MET D 30 -1 O TYR D 26 N THR D 23 SHEET 3 L 4 LEU D 36 LYS D 40 -1 O VAL D 37 N VAL D 29 SHEET 4 L 4 ASN D 45 GLU D 49 -1 O TRP D 48 N LEU D 38 SSBOND 1 CYS A 30 CYS A 52 1555 1555 1.83 SSBOND 2 CYS B 34 CYS B 59 1555 1555 2.09 SSBOND 3 CYS C 30 CYS C 52 1555 1555 2.11 SSBOND 4 CYS D 34 CYS D 59 1555 1555 2.08 CISPEP 1 TYR A 76 PRO A 77 0 -4.61 CISPEP 2 GLY A 101 PRO A 102 0 1.40 CISPEP 3 ALA A 110 ALA A 111 0 1.22 CISPEP 4 GLY B 105 PRO B 106 0 1.88 CISPEP 5 ALA B 112 ALA B 113 0 17.29 CISPEP 6 TYR C 76 PRO C 77 0 -8.04 CISPEP 7 GLY C 101 PRO C 102 0 3.24 CISPEP 8 ALA C 109 ALA C 110 0 -4.42 CISPEP 9 GLY D 105 PRO D 106 0 1.50 SITE 1 AC1 5 PRO A 93 ASP A 94 HOH A 131 HOH A 200 SITE 2 AC1 5 ILE B 2 SITE 1 AC2 6 HOH A 418 HOH A 578 ARG B 24 ASP B 25 SITE 2 AC2 6 LYS B 40 HOH B 323 SITE 1 AC3 3 GLU A 20 HOH A 130 PRO B 3 SITE 1 AC4 2 GLU A 20 HOH A 320 SITE 1 AC5 5 GLY B 56 GLN B 57 HIS B 58 ASP B 73 SITE 2 AC5 5 ASP B 74 SITE 1 AC6 3 ASN A 86 GLN B 96 TYR B 104 SITE 1 AC7 6 PRO C 93 ASP C 94 HOH C 153 ILE D 2 SITE 2 AC7 6 PHE D 10 HOH D 124 SITE 1 AC8 3 SER C 66 SER C 69 HOH C 534 SITE 1 AC9 5 GLY D 56 GLN D 57 HIS D 58 ASP D 73 SITE 2 AC9 5 ASP D 74 SITE 1 BC1 6 HOH C 153 HIS D 65 ASP D 90 HOH D 188 SITE 2 BC1 6 HOH D 275 HOH D 580 CRYST1 48.422 98.154 105.827 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020652 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010188 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009449 0.00000