HEADER TRANSFERASE/ANTIBIOTIC 05-APR-10 3MG9 TITLE TEG 12 BINARY STRUCTURE COMPLEXED WITH THE TEICOPLANIN AGLYCONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TEG12; COMPND 3 CHAIN: A; COMPND 4 EC: 2.8.2.-; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TEICOPLANIN AGLYCONE; COMPND 8 CHAIN: B, C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNCULTURED SOIL BACTERIUM; SOURCE 3 ORGANISM_TAXID: 164851; SOURCE 4 GENE: TEG1, TEG12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: NONOMURAEA SP. ATCC 39727; SOURCE 12 ORGANISM_TAXID: 93944 KEYWDS SULFOTRANSFERASE, GLYOPEPTIDE, ANTIBIOTIC, TRANSFERASE-ANTIBIOTIC KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.BICK,J.J.BANIK,S.A.DARST,S.F.BRADY REVDAT 4 22-NOV-23 3MG9 1 LINK REVDAT 3 06-SEP-23 3MG9 1 REMARK SEQADV SEQRES LINK REVDAT 2 13-JUL-11 3MG9 1 VERSN REVDAT 1 09-JUN-10 3MG9 0 JRNL AUTH M.J.BICK,J.J.BANIK,S.A.DARST,S.F.BRADY JRNL TITL CRYSTAL STRUCTURES OF THE GLYCOPEPTIDE SULFOTRANSFERASE JRNL TITL 2 TEG12 IN A COMPLEX WITH THE TEICOPLANIN AGLYCONE. JRNL REF BIOCHEMISTRY V. 49 4159 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20361791 JRNL DOI 10.1021/BI100150V REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.120 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 15758 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 798 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.3250 - 4.1155 0.99 2792 121 0.1645 0.1948 REMARK 3 2 4.1155 - 3.2674 0.99 2648 125 0.1486 0.2087 REMARK 3 3 3.2674 - 2.8546 0.98 2578 143 0.1911 0.2547 REMARK 3 4 2.8546 - 2.5937 0.94 2449 155 0.1916 0.2552 REMARK 3 5 2.5937 - 2.4078 0.90 2333 137 0.1957 0.2340 REMARK 3 6 2.4078 - 2.2660 0.82 2160 117 0.2018 0.2345 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 55.09 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.02320 REMARK 3 B22 (A**2) : 0.97910 REMARK 3 B33 (A**2) : 2.04410 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2184 REMARK 3 ANGLE : 1.038 2983 REMARK 3 CHIRALITY : 0.074 310 REMARK 3 PLANARITY : 0.019 377 REMARK 3 DIHEDRAL : 22.406 874 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID -8:-5) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5657 0.8489 10.0219 REMARK 3 T TENSOR REMARK 3 T11: 0.2389 T22: 0.6661 REMARK 3 T33: 0.3258 T12: 0.1702 REMARK 3 T13: 0.1305 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 0.0187 L22: 0.5567 REMARK 3 L33: 0.2947 L12: -0.0298 REMARK 3 L13: 0.0014 L23: 0.3861 REMARK 3 S TENSOR REMARK 3 S11: 0.2607 S12: -0.2286 S13: -0.0025 REMARK 3 S21: -0.1869 S22: -0.2214 S23: -0.1582 REMARK 3 S31: 0.0670 S32: 0.1438 S33: 0.0026 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN C) REMARK 3 ORIGIN FOR THE GROUP (A): NULL NULL NULL REMARK 3 T TENSOR REMARK 3 T11: 0.8886 T22: 0.8005 REMARK 3 T33: 1.0637 T12: -0.1056 REMARK 3 T13: 0.3530 T23: -0.1807 REMARK 3 L TENSOR REMARK 3 L11: 0.0027 L22: 0.0453 REMARK 3 L33: 0.0496 L12: 0.0062 REMARK 3 L13: -0.0042 L23: 0.0270 REMARK 3 S TENSOR REMARK 3 S11: -1.0627 S12: 0.8816 S13: 0.0382 REMARK 3 S21: -0.2371 S22: -0.2300 S23: 1.4143 REMARK 3 S31: 0.1323 S32: -1.1877 S33: 0.0006 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 91:109) REMARK 3 ORIGIN FOR THE GROUP (A): NULL NULL NULL REMARK 3 T TENSOR REMARK 3 T11: 0.2129 T22: 0.2830 REMARK 3 T33: 0.2611 T12: -0.0315 REMARK 3 T13: 0.0859 T23: 0.0585 REMARK 3 L TENSOR REMARK 3 L11: 0.5260 L22: 0.4919 REMARK 3 L33: 0.3578 L12: -0.3787 REMARK 3 L13: 0.0950 L23: 0.2095 REMARK 3 S TENSOR REMARK 3 S11: -0.2905 S12: -0.3636 S13: -0.6933 REMARK 3 S21: 0.2051 S22: 0.0488 S23: -0.0291 REMARK 3 S31: 0.5835 S32: -0.1389 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 205:216) REMARK 3 ORIGIN FOR THE GROUP (A): NULL NULL NULL REMARK 3 T TENSOR REMARK 3 T11: 0.4299 T22: 0.3068 REMARK 3 T33: 0.3577 T12: -0.0681 REMARK 3 T13: 0.1188 T23: 0.0411 REMARK 3 L TENSOR REMARK 3 L11: 0.0104 L22: 0.8975 REMARK 3 L33: 0.3638 L12: 0.0379 REMARK 3 L13: -0.0558 L23: 0.0263 REMARK 3 S TENSOR REMARK 3 S11: 0.0554 S12: 0.0709 S13: -0.0592 REMARK 3 S21: 0.9519 S22: -0.3189 S23: -0.7983 REMARK 3 S31: -0.4065 S32: 0.0353 S33: -0.0062 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B) REMARK 3 ORIGIN FOR THE GROUP (A): NULL NULL NULL REMARK 3 T TENSOR REMARK 3 T11: 0.4039 T22: 0.5426 REMARK 3 T33: 0.7145 T12: 0.0058 REMARK 3 T13: 0.0847 T23: 0.1335 REMARK 3 L TENSOR REMARK 3 L11: 0.0404 L22: 0.1163 REMARK 3 L33: 0.0372 L12: 0.0506 REMARK 3 L13: -0.0384 L23: -0.0613 REMARK 3 S TENSOR REMARK 3 S11: -0.2385 S12: 0.1503 S13: -1.1334 REMARK 3 S21: -0.8433 S22: -0.0538 S23: 0.8226 REMARK 3 S31: -0.1195 S32: -0.4785 S33: 0.0002 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 0:90) REMARK 3 ORIGIN FOR THE GROUP (A): NULL NULL NULL REMARK 3 T TENSOR REMARK 3 T11: 0.1773 T22: 0.1563 REMARK 3 T33: 0.1706 T12: 0.0560 REMARK 3 T13: 0.0302 T23: 0.0791 REMARK 3 L TENSOR REMARK 3 L11: 0.7701 L22: 1.7311 REMARK 3 L33: 2.4156 L12: 0.5993 REMARK 3 L13: 1.0406 L23: -0.0551 REMARK 3 S TENSOR REMARK 3 S11: 0.1389 S12: -0.0723 S13: -0.2427 REMARK 3 S21: -0.0144 S22: -0.0747 S23: -0.0505 REMARK 3 S31: 0.3263 S32: 0.0318 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 247:285) REMARK 3 ORIGIN FOR THE GROUP (A): NULL NULL NULL REMARK 3 T TENSOR REMARK 3 T11: 0.1997 T22: 0.1894 REMARK 3 T33: 0.2031 T12: 0.0536 REMARK 3 T13: 0.0049 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 1.3340 L22: 0.8737 REMARK 3 L33: 1.8145 L12: -0.0453 REMARK 3 L13: -0.2129 L23: -1.2463 REMARK 3 S TENSOR REMARK 3 S11: -0.3251 S12: 0.2068 S13: 0.1433 REMARK 3 S21: -0.1545 S22: 0.1189 S23: 0.1712 REMARK 3 S31: -0.0996 S32: -0.0112 S33: -0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 110:129) REMARK 3 ORIGIN FOR THE GROUP (A): NULL NULL NULL REMARK 3 T TENSOR REMARK 3 T11: 0.2399 T22: 0.3857 REMARK 3 T33: 0.2129 T12: 0.1532 REMARK 3 T13: -0.0086 T23: -0.0432 REMARK 3 L TENSOR REMARK 3 L11: 0.2531 L22: 0.2606 REMARK 3 L33: 0.4403 L12: 0.2062 REMARK 3 L13: -0.0404 L23: 0.1772 REMARK 3 S TENSOR REMARK 3 S11: -0.3130 S12: -0.9389 S13: 0.1812 REMARK 3 S21: 0.3272 S22: 0.2457 S23: 0.1852 REMARK 3 S31: -0.2779 S32: -0.1239 S33: 0.0002 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 135:204) REMARK 3 ORIGIN FOR THE GROUP (A): NULL NULL NULL REMARK 3 T TENSOR REMARK 3 T11: 0.1520 T22: 0.1345 REMARK 3 T33: 0.1783 T12: 0.0774 REMARK 3 T13: 0.0720 T23: 0.0371 REMARK 3 L TENSOR REMARK 3 L11: 1.1871 L22: 1.3456 REMARK 3 L33: 1.9175 L12: 0.0448 REMARK 3 L13: 0.3490 L23: 0.1017 REMARK 3 S TENSOR REMARK 3 S11: 0.0396 S12: 0.0735 S13: -0.2382 REMARK 3 S21: -0.0826 S22: -0.1200 S23: -0.1664 REMARK 3 S31: 0.1066 S32: 0.1946 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3MG9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058507. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : VERTICAL AND HORIZONTAL FOCUSING REMARK 200 MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16630 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.266 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.08680 REMARK 200 R SYM (I) : 0.08680 REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.54200 REMARK 200 R SYM FOR SHELL (I) : 0.54200 REMARK 200 FOR SHELL : 2.170 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2OV8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MG/ML PROTEIN. 1:1 UL HANGING DROPS. REMARK 280 1.0M SODIUM FORMATE, 0.1 M SODIUM ACETATE, PH 4.6, 1MM REMARK 280 TEICOPLANIN AGLYCONE, 25 MM CHES, PH 9.1, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.05950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.46850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.07700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.46850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.05950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.07700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.05950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.07700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.46850 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.07700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.05950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.46850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -33.05950 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2056 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2060 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 TEICOPLANIN IS A FAMILY OF TETRACYCLIC GLYCOPEPTIDE ANTIBIOTICS. REMARK 400 THE SCAFFOLD IS A HEPTAPEPTIDE FURTHER GLYCOSYLATED BY THREE REMARK 400 MONO SACCHARIDES: MANNOSE, N-ACETYLGLUCOSAMINE AND REMARK 400 BETA-D-GLUCOSAMINE AND ONLY DIFFER BY THE SIDE CHAIN ATTACHED REMARK 400 TO THE LATTER. REMARK 400 HERE, TEICOPLANIN AGLYCON IS REPRESENTED BY THE SEQUENCE (SEQRES) REMARK 400 REMARK 400 THE TEICOPLANIN AGLYCONE IS OLIGOPEPTIDE, A MEMBER OF ANTIBIOTIC REMARK 400 CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: TEICOPLANIN AGLYCONE REMARK 400 CHAIN: B, C REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: TEICOPLANIN AGLYCON IS THE NONSUGAR COMPONENT OF REMARK 400 TEICOPLANIN, CONSISTING OF THE TETRACYCLIC REMARK 400 HEPTAPEPTIDE ONLY. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 UNK A -4 REMARK 465 UNK A -3 REMARK 465 UNK A -2 REMARK 465 UNK A -1 REMARK 465 ALA A 130 REMARK 465 LEU A 131 REMARK 465 GLY A 132 REMARK 465 ALA A 133 REMARK 465 GLY A 134 REMARK 465 GLN A 217 REMARK 465 GLN A 218 REMARK 465 GLY A 219 REMARK 465 GLY A 220 REMARK 465 GLY A 221 REMARK 465 SER A 222 REMARK 465 PRO A 223 REMARK 465 ILE A 224 REMARK 465 ARG A 225 REMARK 465 HIS A 226 REMARK 465 GLY A 227 REMARK 465 ASP A 228 REMARK 465 ALA A 229 REMARK 465 ARG A 230 REMARK 465 MET A 231 REMARK 465 MET A 232 REMARK 465 LYS A 233 REMARK 465 GLY A 234 REMARK 465 GLY A 235 REMARK 465 PRO A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ALA A 239 REMARK 465 ARG A 240 REMARK 465 PRO A 241 REMARK 465 GLN A 242 REMARK 465 PHE A 243 REMARK 465 VAL A 244 REMARK 465 GLY A 245 REMARK 465 GLU A 246 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 GLN A 32 CG CD OE1 NE2 REMARK 470 GLU A 57 CD OE1 OE2 REMARK 470 MET A 59 CG SD CE REMARK 470 GLU A 80 CD OE1 OE2 REMARK 470 MET A 102 SD CE REMARK 470 GLU A 111 CD OE1 OE2 REMARK 470 ARG A 118 CD NE CZ NH1 NH2 REMARK 470 LYS A 119 CE NZ REMARK 470 GLU A 183 CD OE1 OE2 REMARK 470 GLU A 194 CD OE1 OE2 REMARK 470 ARG A 197 NE CZ NH1 NH2 REMARK 470 ARG A 198 CD NE CZ NH1 NH2 REMARK 470 GLU A 258 CD OE1 OE2 REMARK 470 LYS A 279 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 3FG B 389 C GHP B 390 N 0.138 REMARK 500 3FG C 389 C GHP C 390 N 0.142 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 OMY C 392 14.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 288 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 289 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN B OF TEICOPLANIN AGLYCONE REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN C OF TEICOPLANIN AGLYCONE REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MGB RELATED DB: PDB REMARK 900 TEG 12 TERNARY STRUCTURE COMPLEXED WITH PAP AND THE TEICOPLANIN REMARK 900 AGLYCONE REMARK 900 RELATED ID: 2WDX RELATED DB: PDB REMARK 900 THE COMPLEXED CRYSTAL STRUCTURE OF THE PRIMARY HEXOSE OXIDASE REMARK 900 (DBV29) IN ANTIBIOTIC A40926 BIOSYNTHESIS REMARK 900 RELATED ID: 3MGC RELATED DB: PDB REMARK 900 TEG12 APO DBREF 3MG9 A 1 285 UNP B7T1D7 B7T1D7_9BACT 1 285 DBREF 3MG9 B 387 393 PDB 3MG9 3MG9 387 393 DBREF 3MG9 C 387 393 PDB 3MG9 3MG9 387 393 SEQADV 3MG9 UNK A -8 UNP B7T1D7 EXPRESSION TAG SEQADV 3MG9 UNK A -7 UNP B7T1D7 EXPRESSION TAG SEQADV 3MG9 UNK A -6 UNP B7T1D7 EXPRESSION TAG SEQADV 3MG9 UNK A -5 UNP B7T1D7 EXPRESSION TAG SEQADV 3MG9 UNK A -4 UNP B7T1D7 EXPRESSION TAG SEQADV 3MG9 UNK A -3 UNP B7T1D7 EXPRESSION TAG SEQADV 3MG9 UNK A -2 UNP B7T1D7 EXPRESSION TAG SEQADV 3MG9 UNK A -1 UNP B7T1D7 EXPRESSION TAG SEQADV 3MG9 SER A 0 UNP B7T1D7 EXPRESSION TAG SEQRES 1 A 294 UNK UNK UNK UNK UNK UNK UNK UNK SER MET ASN GLY ILE SEQRES 2 A 294 ARG TRP ILE ALA SER TYR PRO LYS ALA GLY ASN THR TRP SEQRES 3 A 294 VAL ARG CYS MET LEU ALA ALA TYR ILE THR GLY LYS ALA SEQRES 4 A 294 PRO GLN VAL TRP ASN ASP ILE ASP ALA GLU SER LEU THR SEQRES 5 A 294 LEU GLU ALA MET LEU ARG PHE GLY ASP LEU PRO PRO ALA SEQRES 6 A 294 GLU PRO MET GLU PRO VAL LEU VAL LYS THR HIS LEU LYS SEQRES 7 A 294 ALA ASP VAL PRO VAL LEU GLY LEU TYR GLY GLU ALA THR SEQRES 8 A 294 ALA LYS VAL LEU TYR LEU VAL ARG ASN PRO ARG ASP MET SEQRES 9 A 294 LEU LEU SER SER MET ARG MET ALA SER ILE SER ARG ASP SEQRES 10 A 294 ASP VAL GLU LYS SER ARG ASP PHE ALA ARG LYS PHE ILE SEQRES 11 A 294 ALA ASN GLU GLY LEU GLY TRP ASN ALA LEU GLY ALA GLY SEQRES 12 A 294 GLY GLY VAL GLY LEU GLY SER TRP PRO GLU ASN VAL ARG SEQRES 13 A 294 SER TRP THR GLU SER SER SER ASP ARG PHE PRO ASN ALA SEQRES 14 A 294 ASP VAL LEU THR MET ARG TYR GLU ASP LEU LYS GLY ASP SEQRES 15 A 294 PRO VAL ALA ARG PHE SER GLU ILE VAL GLU PHE LEU ASP SEQRES 16 A 294 LEU GLY GLY PRO VAL ASP ILE GLU ASP ILE ARG ARG ALA SEQRES 17 A 294 VAL ALA ALA SER THR LEU GLU ARG MET ARG GLU LEU GLU SEQRES 18 A 294 LYS ARG SER GLU GLN GLN GLY GLY GLY SER PRO ILE ARG SEQRES 19 A 294 HIS GLY ASP ALA ARG MET MET LYS GLY GLY PRO GLY GLY SEQRES 20 A 294 ALA ARG PRO GLN PHE VAL GLY GLU GLY ARG TYR ASP GLN SEQRES 21 A 294 SER LEU SER PHE LEU GLY GLU ASP ILE GLU SER ASP TYR SEQRES 22 A 294 GLN GLU LEU LEU HIS GLY ASP SER GLY PHE ALA LEU TYR SEQRES 23 A 294 ALA LYS GLN TYR GLY TYR ALA GLY SEQRES 1 B 7 GHP 3MY 3FG GHP GHP OMY 3FG SEQRES 1 C 7 GHP 3MY 3FG GHP GHP OMY 3FG HET GHP B 387 11 HET 3MY B 388 13 HET 3FG B 389 12 HET GHP B 390 11 HET GHP B 391 11 HET OMY B 392 14 HET 3FG B 393 13 HET GHP C 387 11 HET 3MY C 388 13 HET 3FG C 389 12 HET GHP C 390 11 HET GHP C 391 11 HET OMY C 392 14 HET 3FG C 393 13 HET FMT A 288 3 HET FMT A 289 3 HET GOL B 400 6 HETNAM GHP (2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID HETNAM 3MY 3-CHLORO-D-TYROSINE HETNAM 3FG (2S)-AMINO(3,5-DIHYDROXYPHENYL)ETHANOIC ACID HETNAM OMY (BETAR)-3-CHLORO-BETA-HYDROXY-L-TYROSINE HETNAM FMT FORMIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GHP 6(C8 H9 N O3) FORMUL 2 3MY 2(C9 H10 CL N O3) FORMUL 2 3FG 4(C8 H9 N O4) FORMUL 2 OMY 2(C9 H10 CL N O4) FORMUL 4 FMT 2(C H2 O2) FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *95(H2 O) HELIX 1 1 GLY A 14 GLY A 28 1 15 HELIX 2 2 VAL A 33 SER A 41 5 9 HELIX 3 3 LEU A 44 PHE A 50 1 7 HELIX 4 4 VAL A 72 GLY A 79 5 8 HELIX 5 5 ASN A 91 ARG A 101 1 11 HELIX 6 6 MET A 102 SER A 104 5 3 HELIX 7 7 ASP A 109 GLU A 124 1 16 HELIX 8 8 GLY A 135 LEU A 139 5 5 HELIX 9 9 SER A 141 GLU A 151 1 11 HELIX 10 10 SER A 152 PHE A 157 1 6 HELIX 11 11 TYR A 167 ASP A 173 1 7 HELIX 12 12 ASP A 173 ASP A 186 1 14 HELIX 13 13 ASP A 192 GLU A 216 1 25 HELIX 14 14 LEU A 253 LEU A 256 5 4 HELIX 15 15 GLY A 257 HIS A 269 1 13 HELIX 16 16 SER A 272 TYR A 281 1 10 SHEET 1 AA 5 LEU A 42 THR A 43 0 SHEET 2 AA 5 PRO A 61 THR A 66 1 O LEU A 63 N LEU A 42 SHEET 3 AA 5 GLY A 3 SER A 9 1 O GLY A 3 N VAL A 62 SHEET 4 AA 5 THR A 82 VAL A 89 1 N ALA A 83 O ILE A 4 SHEET 5 AA 5 ASP A 161 ARG A 166 1 O ASP A 161 N VAL A 85 LINK C GHP B 387 N 3MY B 388 1555 1555 1.45 LINK C3 GHP B 387 OD2 3FG B 389 1555 1555 1.42 LINK C 3MY B 388 N 3FG B 389 1555 1555 1.44 LINK OBD 3MY B 388 C3 GHP B 390 1555 1555 1.39 LINK C 3FG B 389 N GHP B 390 1555 1555 1.47 LINK C GHP B 390 N GHP B 391 1555 1555 1.45 LINK C5 GHP B 390 OCZ OMY B 392 1555 1555 1.40 LINK C GHP B 391 N OMY B 392 1555 1555 1.43 LINK C5 GHP B 391 CG1 3FG B 393 1555 1555 1.43 LINK C OMY B 392 N 3FG B 393 1555 1555 1.45 LINK C GHP C 387 N 3MY C 388 1555 1555 1.45 LINK C3 GHP C 387 OD2 3FG C 389 1555 1555 1.41 LINK C 3MY C 388 N 3FG C 389 1555 1555 1.44 LINK OBD 3MY C 388 C3 GHP C 390 1555 1555 1.40 LINK C 3FG C 389 N GHP C 390 1555 1555 1.48 LINK C GHP C 390 N GHP C 391 1555 1555 1.45 LINK C5 GHP C 390 OCZ OMY C 392 1555 1555 1.40 LINK C GHP C 391 N OMY C 392 1555 1555 1.43 LINK C5 GHP C 391 CG1 3FG C 393 1555 1555 1.43 LINK C OMY C 392 N 3FG C 393 1555 1555 1.46 CISPEP 1 GHP B 391 OMY B 392 0 10.03 CISPEP 2 GHP C 391 OMY C 392 0 15.12 SITE 1 AC1 6 ASN A 15 THR A 43 GLU A 45 LYS A 65 SITE 2 AC1 6 THR A 66 HIS A 67 SITE 1 AC2 3 LYS A 12 ASN A 35 HOH A2062 SITE 1 AC3 6 ARG A 214 GHP B 387 3MY B 388 3FG B 389 SITE 2 AC3 6 GHP B 390 OMY B 392 SITE 1 AC4 24 LYS A 12 ARG A 90 LEU A 97 SER A 98 SITE 2 AC4 24 ARG A 101 SER A 106 ARG A 107 ASP A 108 SITE 3 AC4 24 TYR A 167 LYS A 171 GLU A 206 ARG A 207 SITE 4 AC4 24 GLU A 210 LYS A 213 ARG A 214 GLU A 216 SITE 5 AC4 24 ARG A 248 GLN A 251 HOH A2067 HOH A2075 SITE 6 AC4 24 GOL B 400 HOH B2001 HOH B2005 HOH B2006 SITE 1 AC5 12 PRO A 190 VAL A 191 ASP A 192 ILE A 193 SITE 2 AC5 12 MET A 208 ARG A 209 LEU A 211 GLU A 212 SITE 3 AC5 12 SER A 215 GLU A 216 HOH C2001 HOH C2002 CRYST1 66.119 80.154 132.937 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015124 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012476 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007522 0.00000