HEADER FLUORESCENT PROTEIN 06-APR-10 3MGF TITLE CRYSTAL STRUCTURE OF MONOMERIC KUSABIRA-ORANGE (MKO), ORANGE-EMITTING TITLE 2 GFP-LIKE PROTEIN, AT PH 7.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLUORESCENT PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: ORANGE-EMITTING GFP-LIKE PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VERRILLOFUNGIA CONCINNA; SOURCE 3 ORGANISM_TAXID: 496660; SOURCE 4 GENE: MKO; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: KRX; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET-28(+) KEYWDS FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.EBISAWA,A.YAMAMURA,J.OHTSUKA,Y.KAMEDA,K.HAYAKAWA,K.NAGATA, AUTHOR 2 M.TANOKURA REVDAT 4 13-NOV-24 3MGF 1 REMARK REVDAT 3 15-NOV-23 3MGF 1 LINK ATOM REVDAT 2 01-NOV-23 3MGF 1 SEQADV LINK REVDAT 1 16-MAR-11 3MGF 0 JRNL AUTH T.EBISAWA,A.YAMAMURA,J.OHTSUKA,Y.KAMEDA,K.HAYAKAWA,K.NAGATA, JRNL AUTH 2 M.TANOKURA JRNL TITL CRYSTAL STRUCTURE OF MONOMERIC KUSABIRA-ORANGE (MKO), JRNL TITL 2 ORANGE-EMITTING GFP-LIKE PROTEIN, AT PH 7.5 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 79012 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3963 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5493 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.1800 REMARK 3 BIN FREE R VALUE SET COUNT : 264 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6787 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 851 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.162 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6974 ; 0.024 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9404 ; 2.115 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 836 ; 6.986 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 312 ;33.726 ;23.846 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1176 ;14.741 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;19.866 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 955 ; 0.170 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5352 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4192 ; 1.281 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6740 ; 2.138 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2782 ; 3.579 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2664 ; 5.538 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 218 REMARK 3 ORIGIN FOR THE GROUP (A): 20.4770 -10.6120 24.3740 REMARK 3 T TENSOR REMARK 3 T11: 0.0684 T22: 0.0440 REMARK 3 T33: 0.0321 T12: 0.0271 REMARK 3 T13: 0.0224 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.2054 L22: 0.8761 REMARK 3 L33: 0.0621 L12: -0.1140 REMARK 3 L13: 0.0550 L23: -0.1644 REMARK 3 S TENSOR REMARK 3 S11: 0.0387 S12: -0.0521 S13: -0.0035 REMARK 3 S21: -0.1410 S22: -0.1113 S23: -0.0298 REMARK 3 S31: 0.0290 S32: 0.0249 S33: 0.0727 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 218 REMARK 3 ORIGIN FOR THE GROUP (A): 0.1480 11.4740 24.0700 REMARK 3 T TENSOR REMARK 3 T11: 0.0458 T22: 0.0534 REMARK 3 T33: 0.0284 T12: 0.0085 REMARK 3 T13: -0.0039 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.1860 L22: 0.7291 REMARK 3 L33: 0.3315 L12: 0.0309 REMARK 3 L13: 0.1204 L23: -0.0049 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: -0.0482 S13: 0.0006 REMARK 3 S21: -0.0713 S22: -0.0371 S23: 0.0722 REMARK 3 S31: -0.0324 S32: -0.0057 S33: 0.0370 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 218 REMARK 3 ORIGIN FOR THE GROUP (A): 33.5710 -10.6110 -14.1880 REMARK 3 T TENSOR REMARK 3 T11: 0.0692 T22: 0.0433 REMARK 3 T33: 0.0244 T12: -0.0067 REMARK 3 T13: 0.0263 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.2654 L22: 0.5668 REMARK 3 L33: 0.1784 L12: -0.1880 REMARK 3 L13: -0.1225 L23: 0.1697 REMARK 3 S TENSOR REMARK 3 S11: -0.0397 S12: -0.0082 S13: -0.0511 REMARK 3 S21: -0.0484 S22: 0.0138 S23: -0.0422 REMARK 3 S31: -0.0191 S32: 0.0058 S33: 0.0259 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 3 D 218 REMARK 3 ORIGIN FOR THE GROUP (A): 13.4130 11.4720 -11.9620 REMARK 3 T TENSOR REMARK 3 T11: 0.0443 T22: 0.0455 REMARK 3 T33: 0.0438 T12: -0.0031 REMARK 3 T13: -0.0061 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.3068 L22: 0.8715 REMARK 3 L33: 0.0997 L12: 0.1212 REMARK 3 L13: 0.0123 L23: -0.1097 REMARK 3 S TENSOR REMARK 3 S11: 0.0252 S12: -0.0855 S13: 0.0752 REMARK 3 S21: -0.1014 S22: -0.0541 S23: 0.1300 REMARK 3 S31: 0.0478 S32: 0.0414 S33: 0.0288 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3MGF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058513. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79034 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.7900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2ZMW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M L-PROLINE, 0.1M HEPES, 10%(W/V) REMARK 280 POLYETHYLENE GLYCOL 3350, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.88000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 GLY B -2 REMARK 465 ALA B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 LYS B 185 REMARK 465 ILE B 186 REMARK 465 LEU B 187 REMARK 465 GLY C -2 REMARK 465 ALA C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 VAL C 2 REMARK 465 GLY D -2 REMARK 465 ALA D -1 REMARK 465 HIS D 0 REMARK 465 MET D 1 REMARK 465 VAL D 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 9 CG - SD - CE ANGL. DEV. = -24.7 DEGREES REMARK 500 ARG A 94 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP A 131 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 PHE A 176 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 PHE A 176 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 SER D 152 CB - CA - C ANGL. DEV. = 11.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 54 32.80 -92.60 REMARK 500 SER B 152 -130.08 -118.52 REMARK 500 SER C 152 -134.02 -111.51 REMARK 500 SER D 152 -135.38 -135.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 168 GLY A 169 146.48 REMARK 500 SER D 3 VAL D 4 -149.43 REMARK 500 REMARK 500 REMARK: NULL DBREF 3MGF A 1 218 UNP Q6I7B2 Q6I7B2_FUNCO 1 218 DBREF 3MGF B 1 218 UNP Q6I7B2 Q6I7B2_FUNCO 1 218 DBREF 3MGF C 1 218 UNP Q6I7B2 Q6I7B2_FUNCO 1 218 DBREF 3MGF D 1 218 UNP Q6I7B2 Q6I7B2_FUNCO 1 218 SEQADV 3MGF GLY A -2 UNP Q6I7B2 EXPRESSION TAG SEQADV 3MGF ALA A -1 UNP Q6I7B2 EXPRESSION TAG SEQADV 3MGF HIS A 0 UNP Q6I7B2 EXPRESSION TAG SEQADV 3MGF CFY A 66 UNP Q6I7B2 PHE 64 CHROMOPHORE SEQADV 3MGF CFY A 66 UNP Q6I7B2 CYS 65 CHROMOPHORE SEQADV 3MGF CFY A 66 UNP Q6I7B2 TYR 66 CHROMOPHORE SEQADV 3MGF CFY A 66 UNP Q6I7B2 GLY 67 CHROMOPHORE SEQADV 3MGF GLY B -2 UNP Q6I7B2 EXPRESSION TAG SEQADV 3MGF ALA B -1 UNP Q6I7B2 EXPRESSION TAG SEQADV 3MGF HIS B 0 UNP Q6I7B2 EXPRESSION TAG SEQADV 3MGF CFY B 66 UNP Q6I7B2 PHE 64 CHROMOPHORE SEQADV 3MGF CFY B 66 UNP Q6I7B2 CYS 65 CHROMOPHORE SEQADV 3MGF CFY B 66 UNP Q6I7B2 TYR 66 CHROMOPHORE SEQADV 3MGF CFY B 66 UNP Q6I7B2 GLY 67 CHROMOPHORE SEQADV 3MGF GLY C -2 UNP Q6I7B2 EXPRESSION TAG SEQADV 3MGF ALA C -1 UNP Q6I7B2 EXPRESSION TAG SEQADV 3MGF HIS C 0 UNP Q6I7B2 EXPRESSION TAG SEQADV 3MGF CFY C 66 UNP Q6I7B2 PHE 64 CHROMOPHORE SEQADV 3MGF CFY C 66 UNP Q6I7B2 CYS 65 CHROMOPHORE SEQADV 3MGF CFY C 66 UNP Q6I7B2 TYR 66 CHROMOPHORE SEQADV 3MGF CFY C 66 UNP Q6I7B2 GLY 67 CHROMOPHORE SEQADV 3MGF GLY D -2 UNP Q6I7B2 EXPRESSION TAG SEQADV 3MGF ALA D -1 UNP Q6I7B2 EXPRESSION TAG SEQADV 3MGF HIS D 0 UNP Q6I7B2 EXPRESSION TAG SEQADV 3MGF CFY D 66 UNP Q6I7B2 PHE 64 CHROMOPHORE SEQADV 3MGF CFY D 66 UNP Q6I7B2 CYS 65 CHROMOPHORE SEQADV 3MGF CFY D 66 UNP Q6I7B2 TYR 66 CHROMOPHORE SEQADV 3MGF CFY D 66 UNP Q6I7B2 GLY 67 CHROMOPHORE SEQRES 1 A 218 GLY ALA HIS MET VAL SER VAL ILE LYS PRO GLU MET LYS SEQRES 2 A 218 MET ARG TYR TYR MET ASP GLY SER VAL ASN GLY HIS GLU SEQRES 3 A 218 PHE THR ILE GLU GLY GLU GLY THR GLY ARG PRO TYR GLU SEQRES 4 A 218 GLY HIS GLN GLU MET THR LEU ARG VAL THR MET ALA LYS SEQRES 5 A 218 GLY GLY PRO MET PRO PHE ALA PHE ASP LEU VAL SER HIS SEQRES 6 A 218 VAL CFY HIS ARG PRO PHE THR LYS TYR PRO GLU GLU ILE SEQRES 7 A 218 PRO ASP TYR PHE LYS GLN ALA PHE PRO GLU GLY LEU SER SEQRES 8 A 218 TRP GLU ARG SER LEU GLU PHE GLU ASP GLY GLY SER ALA SEQRES 9 A 218 SER VAL SER ALA HIS ILE SER LEU ARG GLY ASN THR PHE SEQRES 10 A 218 TYR HIS LYS SER LYS PHE THR GLY VAL ASN PHE PRO ALA SEQRES 11 A 218 ASP GLY PRO ILE MET GLN ASN GLN SER VAL ASP TRP GLU SEQRES 12 A 218 PRO SER THR GLU LYS ILE THR ALA SER ASP GLY VAL LEU SEQRES 13 A 218 LYS GLY ASP VAL THR MET TYR LEU LYS LEU GLU GLY GLY SEQRES 14 A 218 GLY ASN HIS LYS CYS GLN PHE LYS THR THR TYR LYS ALA SEQRES 15 A 218 ALA LYS LYS ILE LEU LYS MET PRO GLY SER HIS TYR ILE SEQRES 16 A 218 SER HIS ARG LEU VAL ARG LYS THR GLU GLY ASN ILE THR SEQRES 17 A 218 GLU LEU VAL GLU ASP ALA VAL ALA HIS SER SEQRES 1 B 218 GLY ALA HIS MET VAL SER VAL ILE LYS PRO GLU MET LYS SEQRES 2 B 218 MET ARG TYR TYR MET ASP GLY SER VAL ASN GLY HIS GLU SEQRES 3 B 218 PHE THR ILE GLU GLY GLU GLY THR GLY ARG PRO TYR GLU SEQRES 4 B 218 GLY HIS GLN GLU MET THR LEU ARG VAL THR MET ALA LYS SEQRES 5 B 218 GLY GLY PRO MET PRO PHE ALA PHE ASP LEU VAL SER HIS SEQRES 6 B 218 VAL CFY HIS ARG PRO PHE THR LYS TYR PRO GLU GLU ILE SEQRES 7 B 218 PRO ASP TYR PHE LYS GLN ALA PHE PRO GLU GLY LEU SER SEQRES 8 B 218 TRP GLU ARG SER LEU GLU PHE GLU ASP GLY GLY SER ALA SEQRES 9 B 218 SER VAL SER ALA HIS ILE SER LEU ARG GLY ASN THR PHE SEQRES 10 B 218 TYR HIS LYS SER LYS PHE THR GLY VAL ASN PHE PRO ALA SEQRES 11 B 218 ASP GLY PRO ILE MET GLN ASN GLN SER VAL ASP TRP GLU SEQRES 12 B 218 PRO SER THR GLU LYS ILE THR ALA SER ASP GLY VAL LEU SEQRES 13 B 218 LYS GLY ASP VAL THR MET TYR LEU LYS LEU GLU GLY GLY SEQRES 14 B 218 GLY ASN HIS LYS CYS GLN PHE LYS THR THR TYR LYS ALA SEQRES 15 B 218 ALA LYS LYS ILE LEU LYS MET PRO GLY SER HIS TYR ILE SEQRES 16 B 218 SER HIS ARG LEU VAL ARG LYS THR GLU GLY ASN ILE THR SEQRES 17 B 218 GLU LEU VAL GLU ASP ALA VAL ALA HIS SER SEQRES 1 C 218 GLY ALA HIS MET VAL SER VAL ILE LYS PRO GLU MET LYS SEQRES 2 C 218 MET ARG TYR TYR MET ASP GLY SER VAL ASN GLY HIS GLU SEQRES 3 C 218 PHE THR ILE GLU GLY GLU GLY THR GLY ARG PRO TYR GLU SEQRES 4 C 218 GLY HIS GLN GLU MET THR LEU ARG VAL THR MET ALA LYS SEQRES 5 C 218 GLY GLY PRO MET PRO PHE ALA PHE ASP LEU VAL SER HIS SEQRES 6 C 218 VAL CFY HIS ARG PRO PHE THR LYS TYR PRO GLU GLU ILE SEQRES 7 C 218 PRO ASP TYR PHE LYS GLN ALA PHE PRO GLU GLY LEU SER SEQRES 8 C 218 TRP GLU ARG SER LEU GLU PHE GLU ASP GLY GLY SER ALA SEQRES 9 C 218 SER VAL SER ALA HIS ILE SER LEU ARG GLY ASN THR PHE SEQRES 10 C 218 TYR HIS LYS SER LYS PHE THR GLY VAL ASN PHE PRO ALA SEQRES 11 C 218 ASP GLY PRO ILE MET GLN ASN GLN SER VAL ASP TRP GLU SEQRES 12 C 218 PRO SER THR GLU LYS ILE THR ALA SER ASP GLY VAL LEU SEQRES 13 C 218 LYS GLY ASP VAL THR MET TYR LEU LYS LEU GLU GLY GLY SEQRES 14 C 218 GLY ASN HIS LYS CYS GLN PHE LYS THR THR TYR LYS ALA SEQRES 15 C 218 ALA LYS LYS ILE LEU LYS MET PRO GLY SER HIS TYR ILE SEQRES 16 C 218 SER HIS ARG LEU VAL ARG LYS THR GLU GLY ASN ILE THR SEQRES 17 C 218 GLU LEU VAL GLU ASP ALA VAL ALA HIS SER SEQRES 1 D 218 GLY ALA HIS MET VAL SER VAL ILE LYS PRO GLU MET LYS SEQRES 2 D 218 MET ARG TYR TYR MET ASP GLY SER VAL ASN GLY HIS GLU SEQRES 3 D 218 PHE THR ILE GLU GLY GLU GLY THR GLY ARG PRO TYR GLU SEQRES 4 D 218 GLY HIS GLN GLU MET THR LEU ARG VAL THR MET ALA LYS SEQRES 5 D 218 GLY GLY PRO MET PRO PHE ALA PHE ASP LEU VAL SER HIS SEQRES 6 D 218 VAL CFY HIS ARG PRO PHE THR LYS TYR PRO GLU GLU ILE SEQRES 7 D 218 PRO ASP TYR PHE LYS GLN ALA PHE PRO GLU GLY LEU SER SEQRES 8 D 218 TRP GLU ARG SER LEU GLU PHE GLU ASP GLY GLY SER ALA SEQRES 9 D 218 SER VAL SER ALA HIS ILE SER LEU ARG GLY ASN THR PHE SEQRES 10 D 218 TYR HIS LYS SER LYS PHE THR GLY VAL ASN PHE PRO ALA SEQRES 11 D 218 ASP GLY PRO ILE MET GLN ASN GLN SER VAL ASP TRP GLU SEQRES 12 D 218 PRO SER THR GLU LYS ILE THR ALA SER ASP GLY VAL LEU SEQRES 13 D 218 LYS GLY ASP VAL THR MET TYR LEU LYS LEU GLU GLY GLY SEQRES 14 D 218 GLY ASN HIS LYS CYS GLN PHE LYS THR THR TYR LYS ALA SEQRES 15 D 218 ALA LYS LYS ILE LEU LYS MET PRO GLY SER HIS TYR ILE SEQRES 16 D 218 SER HIS ARG LEU VAL ARG LYS THR GLU GLY ASN ILE THR SEQRES 17 D 218 GLU LEU VAL GLU ASP ALA VAL ALA HIS SER MODRES 3MGF CFY A 66 PHE MODRES 3MGF CFY A 66 CYS MODRES 3MGF CFY A 66 TYR MODRES 3MGF CFY A 66 GLY MODRES 3MGF CFY B 66 PHE MODRES 3MGF CFY B 66 CYS MODRES 3MGF CFY B 66 TYR MODRES 3MGF CFY B 66 GLY MODRES 3MGF CFY C 66 PHE MODRES 3MGF CFY C 66 CYS MODRES 3MGF CFY C 66 TYR MODRES 3MGF CFY C 66 GLY MODRES 3MGF CFY D 66 PHE MODRES 3MGF CFY D 66 CYS MODRES 3MGF CFY D 66 TYR MODRES 3MGF CFY D 66 GLY HET CFY A 66 32 HET CFY B 66 32 HET CFY C 66 32 HET CFY D 66 32 HETNAM CFY [(4Z)-2-{(2R)-2-[(1S)-1-AMINO-2-PHENYLETHYL]-2-HYDROXY- HETNAM 2 CFY 2,5-DIHYDRO-1,3-THIAZOL-4-YL}-4-(4- HETNAM 3 CFY HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 4 CFY YL]ACETIC ACID HETSYN CFY CHROMOPHORE (PHE-CYS-TYR-GLY) FORMUL 1 CFY 4(C23 H22 N4 O5 S) FORMUL 5 HOH *851(H2 O) HELIX 1 1 PRO A 34 GLU A 36 5 3 HELIX 2 2 PHE A 57 HIS A 62 1 6 HELIX 3 3 ASP A 80 ALA A 85 1 6 HELIX 4 4 PRO B 34 GLU B 36 5 3 HELIX 5 5 PHE B 57 HIS B 62 1 6 HELIX 6 6 ASP B 80 ALA B 85 1 6 HELIX 7 7 PRO C 34 GLU C 36 5 3 HELIX 8 8 PHE C 57 HIS C 62 1 6 HELIX 9 9 ASP C 80 ALA C 85 1 6 HELIX 10 10 PRO D 34 GLU D 36 5 3 HELIX 11 11 PHE D 57 HIS D 62 1 6 HELIX 12 12 ASP D 80 ALA D 85 1 6 SHEET 1 A13 SER A 139 TRP A 142 0 SHEET 2 A13 VAL A 155 LEU A 166 -1 O LYS A 165 N ASP A 141 SHEET 3 A13 ASN A 171 ALA A 182 -1 O TYR A 180 N LEU A 156 SHEET 4 A13 LEU A 90 PHE A 98 -1 N SER A 91 O LYS A 181 SHEET 5 A13 SER A 103 ARG A 113 -1 O ILE A 110 N LEU A 90 SHEET 6 A13 THR A 116 VAL A 126 -1 O VAL A 126 N SER A 103 SHEET 7 A13 MET A 9 VAL A 19 1 N LYS A 10 O PHE A 117 SHEET 8 A13 HIS A 22 ARG A 33 -1 O PHE A 24 N GLY A 17 SHEET 9 A13 HIS A 38 MET A 47 -1 O THR A 46 N THR A 25 SHEET 10 A13 ILE A 207 HIS A 217 -1 O THR A 208 N LEU A 43 SHEET 11 A13 HIS A 193 GLU A 204 -1 N GLU A 204 O ILE A 207 SHEET 12 A13 SER A 145 SER A 152 -1 N ILE A 149 O HIS A 193 SHEET 13 A13 VAL A 155 LEU A 166 -1 O VAL A 155 N SER A 152 SHEET 1 B13 SER B 139 TRP B 142 0 SHEET 2 B13 LEU B 156 LEU B 166 -1 O LYS B 165 N ASP B 141 SHEET 3 B13 ASN B 171 ALA B 182 -1 O CYS B 174 N MET B 162 SHEET 4 B13 LEU B 90 PHE B 98 -1 N SER B 91 O LYS B 181 SHEET 5 B13 SER B 103 ARG B 113 -1 O ILE B 110 N LEU B 90 SHEET 6 B13 THR B 116 VAL B 126 -1 O VAL B 126 N SER B 103 SHEET 7 B13 MET B 9 VAL B 19 1 N SER B 18 O GLY B 125 SHEET 8 B13 HIS B 22 ARG B 33 -1 O PHE B 24 N GLY B 17 SHEET 9 B13 HIS B 38 MET B 47 -1 O ARG B 44 N GLU B 27 SHEET 10 B13 ILE B 207 HIS B 217 -1 O THR B 208 N LEU B 43 SHEET 11 B13 HIS B 193 GLU B 204 -1 N LYS B 202 O GLU B 209 SHEET 12 B13 SER B 145 ALA B 151 -1 N GLU B 147 O ILE B 195 SHEET 13 B13 LEU B 156 LEU B 166 -1 O ASP B 159 N LYS B 148 SHEET 1 C13 SER C 139 TRP C 142 0 SHEET 2 C13 LEU C 156 LEU C 166 -1 O LYS C 165 N ASP C 141 SHEET 3 C13 ASN C 171 ALA C 182 -1 O CYS C 174 N MET C 162 SHEET 4 C13 LEU C 90 PHE C 98 -1 N SER C 91 O LYS C 181 SHEET 5 C13 SER C 103 ARG C 113 -1 O ILE C 110 N LEU C 90 SHEET 6 C13 THR C 116 VAL C 126 -1 O VAL C 126 N SER C 103 SHEET 7 C13 MET C 9 VAL C 19 1 N LYS C 10 O PHE C 117 SHEET 8 C13 HIS C 22 ARG C 33 -1 O PHE C 24 N GLY C 17 SHEET 9 C13 HIS C 38 MET C 47 -1 O HIS C 38 N ARG C 33 SHEET 10 C13 ILE C 207 HIS C 217 -1 O THR C 208 N LEU C 43 SHEET 11 C13 HIS C 193 GLU C 204 -1 N VAL C 200 O VAL C 211 SHEET 12 C13 SER C 145 ALA C 151 -1 N ILE C 149 O HIS C 193 SHEET 13 C13 LEU C 156 LEU C 166 -1 O LYS C 157 N THR C 150 SHEET 1 D13 SER D 139 TRP D 142 0 SHEET 2 D13 LEU D 156 LEU D 166 -1 O LYS D 165 N ASP D 141 SHEET 3 D13 ASN D 171 ALA D 182 -1 O CYS D 174 N MET D 162 SHEET 4 D13 LEU D 90 PHE D 98 -1 N SER D 91 O LYS D 181 SHEET 5 D13 SER D 103 ARG D 113 -1 O ILE D 110 N LEU D 90 SHEET 6 D13 THR D 116 VAL D 126 -1 O VAL D 126 N SER D 103 SHEET 7 D13 MET D 9 VAL D 19 1 N LYS D 10 O PHE D 117 SHEET 8 D13 HIS D 22 ARG D 33 -1 O ILE D 26 N MET D 15 SHEET 9 D13 HIS D 38 MET D 47 -1 O ARG D 44 N GLU D 27 SHEET 10 D13 ILE D 207 HIS D 217 -1 O THR D 208 N LEU D 43 SHEET 11 D13 HIS D 193 GLU D 204 -1 N TYR D 194 O HIS D 217 SHEET 12 D13 SER D 145 ALA D 151 -1 N GLU D 147 O ILE D 195 SHEET 13 D13 LEU D 156 LEU D 166 -1 O ASP D 159 N LYS D 148 LINK C VAL A 63 N0 CFY A 66 1555 1555 1.49 LINK C3 CFY A 66 N HIS A 68 1555 1555 1.42 LINK C VAL B 63 N0 CFY B 66 1555 1555 1.35 LINK C3 CFY B 66 N HIS B 68 1555 1555 1.26 LINK C VAL C 63 N0 CFY C 66 1555 1555 1.32 LINK C3 CFY C 66 N HIS C 68 1555 1555 1.19 LINK C VAL D 63 N0 CFY D 66 1555 1555 1.34 LINK C3 CFY D 66 N HIS D 68 1555 1555 1.36 CISPEP 1 PHE A 86 PRO A 87 0 10.60 CISPEP 2 PHE B 86 PRO B 87 0 8.37 CISPEP 3 PHE C 86 PRO C 87 0 14.32 CISPEP 4 PHE D 86 PRO D 87 0 18.08 CRYST1 67.520 83.760 82.180 90.00 110.75 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014810 0.000000 0.005611 0.00000 SCALE2 0.000000 0.011939 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013012 0.00000