HEADER LYASE,TRANSFERASE/DNA 06-APR-10 3MGI TITLE TERNARY COMPLEX OF A DNA POLYMERASE LAMBDA LOOP MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE LAMBDA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LOOP MUTANT OF DNA POLYMERASE LAMBDA; COMPND 5 SYNONYM: POL LAMBDA, DNA POLYMERASE KAPPA, DNA POLYMERASE BETA-2, POL COMPND 6 BETA2; COMPND 7 EC: 2.7.7.7, 4.2.99.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: DNA; COMPND 12 CHAIN: T; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DNA (5'-D(*CP*AP*GP*TP*AP*T)-3'); COMPND 16 CHAIN: P; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: DNA (5'-D(P*GP*CP*CP*G)-3'); COMPND 20 CHAIN: D; COMPND 21 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 MOL_ID: 4; SOURCE 16 SYNTHETIC: YES KEYWDS PROTEIN-DNA COMPLEX, LYASE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.GARCIA-DIAZ,K.BEBENEK,R.Z.ZHOU,L.F.POVIRK,T.KUNKEL REVDAT 5 21-FEB-24 3MGI 1 REMARK LINK REVDAT 4 08-NOV-17 3MGI 1 REMARK REVDAT 3 26-JUL-17 3MGI 1 SOURCE REMARK REVDAT 2 06-OCT-10 3MGI 1 JRNL REVDAT 1 19-MAY-10 3MGI 0 JRNL AUTH K.BEBENEK,M.GARCIA-DIAZ,R.Z.ZHOU,L.F.POVIRK,T.A.KUNKEL JRNL TITL LOOP 1 MODULATES THE FIDELITY OF DNA POLYMERASE LAMBDA JRNL REF NUCLEIC ACIDS RES. V. 38 5419 2010 JRNL REFN ISSN 0305-1048 JRNL PMID 20435673 JRNL DOI 10.1093/NAR/GKQ261 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.040 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 3 NUMBER OF REFLECTIONS : 14502 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 711 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.1160 - 4.4440 0.97 3064 157 0.1600 0.1970 REMARK 3 2 4.4440 - 3.5300 0.97 2940 148 0.1660 0.2450 REMARK 3 3 3.5300 - 3.0850 0.93 2809 137 0.1930 0.3050 REMARK 3 4 3.0850 - 2.8030 0.85 2533 138 0.2400 0.2980 REMARK 3 5 2.8030 - 2.6020 0.82 2445 131 0.2690 0.3670 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 26.86 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.910 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.40000 REMARK 3 B22 (A**2) : 3.04700 REMARK 3 B33 (A**2) : -0.64700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2994 REMARK 3 ANGLE : 0.796 4141 REMARK 3 CHIRALITY : 0.046 455 REMARK 3 PLANARITY : 0.002 457 REMARK 3 DIHEDRAL : 18.332 1136 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3MGI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058516. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.504 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15905 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2-PROPANOL, PH 5.5, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.08850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.19100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.61750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.19100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.08850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.61750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 242 REMARK 465 GLN A 243 REMARK 465 PRO A 244 REMARK 465 SER A 245 REMARK 465 SER A 246 REMARK 465 GLN A 247 REMARK 465 LYS A 248 REMARK 465 ALA A 249 REMARK 465 THR A 250 REMARK 465 ASN A 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 252 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 256 CD1 REMARK 470 GLU A 258 CG CD OE1 OE2 REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 SER A 295 OG REMARK 470 GLN A 297 CG CD OE1 NE2 REMARK 470 ILE A 302 CD1 REMARK 470 ILE A 305 CD1 REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 ILE A 313 CD1 REMARK 470 ILE A 314 CD1 REMARK 470 ILE A 316 CD1 REMARK 470 GLU A 318 CG CD OE1 OE2 REMARK 470 SER A 319 OG REMARK 470 HIS A 321 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 323 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 326 CG OD1 OD2 REMARK 470 ILE A 328 CD1 REMARK 470 ARG A 438 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 441 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 443 CG1 CG2 CD1 REMARK 470 VAL A 545 CG1 CG2 REMARK 470 GLU A 572 CG CD OE1 OE2 REMARK 470 TRP A 575 O REMARK 470 DT P 6 O3' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT P 6 P DT P 6 OP1 0.152 REMARK 500 DT P 6 C3' DT P 6 C2' -0.050 REMARK 500 DT P 6 C4 DT P 6 C5 -0.105 REMARK 500 DG D 1 P DG D 1 OP3 -0.128 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG T 2 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT T 7 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DA P 5 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT P 6 O3' - P - O5' ANGL. DEV. = -14.7 DEGREES REMARK 500 DT P 6 O3' - P - OP1 ANGL. DEV. = 14.0 DEGREES REMARK 500 DT P 6 OP1 - P - OP2 ANGL. DEV. = -9.8 DEGREES REMARK 500 DT P 6 N1 - C2 - N3 ANGL. DEV. = 5.0 DEGREES REMARK 500 DT P 6 C2 - N3 - C4 ANGL. DEV. = -6.8 DEGREES REMARK 500 DT P 6 N3 - C4 - C5 ANGL. DEV. = 4.7 DEGREES REMARK 500 DT P 6 C5 - C6 - N1 ANGL. DEV. = -3.6 DEGREES REMARK 500 DT P 6 C5 - C4 - O4 ANGL. DEV. = -4.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 254 -7.51 -173.21 REMARK 500 HIS A 255 46.13 -64.29 REMARK 500 HIS A 321 -168.84 -129.60 REMARK 500 ASN A 407 91.75 -176.22 REMARK 500 CYS A 415 -139.60 -111.09 REMARK 500 ARG A 438 -18.10 -153.49 REMARK 500 ARG A 441 96.75 -65.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 578 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 4 O REMARK 620 2 SER A 339 O 104.6 REMARK 620 3 ILE A 341 O 89.4 95.7 REMARK 620 4 ALA A 344 O 152.3 74.5 63.5 REMARK 620 5 DA P 5 OP1 107.3 147.7 80.0 75.0 REMARK 620 6 HOH P 95 O 136.7 66.1 132.3 69.2 93.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 577 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 87 O REMARK 620 2 ASP A 427 OD2 117.0 REMARK 620 3 ASP A 427 O 69.4 65.9 REMARK 620 4 ASP A 429 OD2 83.1 75.6 112.3 REMARK 620 5 D3T A 576 O3G 117.9 122.3 120.5 127.0 REMARK 620 6 D3T A 576 O1B 77.6 138.6 146.6 67.8 70.5 REMARK 620 7 D3T A 576 O1A 136.8 88.7 151.9 69.7 62.2 61.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE D3T A 576 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 577 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 578 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MGH RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THIS IS A DELETION-SUBSTITUTION MUTANT, WITH REMARK 999 RESIDUES SQEENGQQQ IN THE WILDTYPE SUBSTITUTED BY RESIDUES KGET. REMARK 999 HOWEVER, THE RESIDUE NUMBERING WAS KEPT CONSISTENT WITH THE WT REMARK 999 PROTEIN. DBREF 3MGI A 242 462 UNP Q9UGP5 DPOLL_HUMAN 242 462 DBREF 3MGI A 472 575 UNP Q9UGP5 DPOLL_HUMAN 472 575 DBREF 3MGI T 1 11 PDB 3MGI 3MGI 1 11 DBREF 3MGI P 1 6 PDB 3MGI 3MGI 1 6 DBREF 3MGI D 1 4 PDB 3MGI 3MGI 1 4 SEQADV 3MGI LYS A 463 UNP Q9UGP5 SEE REMARK 999 SEQADV 3MGI GLY A 464 UNP Q9UGP5 SEE REMARK 999 SEQADV 3MGI GLU A 470 UNP Q9UGP5 SEE REMARK 999 SEQADV 3MGI THR A 471 UNP Q9UGP5 SEE REMARK 999 SEQRES 1 A 329 ALA GLN PRO SER SER GLN LYS ALA THR ASN HIS ASN LEU SEQRES 2 A 329 HIS ILE THR GLU LYS LEU GLU VAL LEU ALA LYS ALA TYR SEQRES 3 A 329 SER VAL GLN GLY ASP LYS TRP ARG ALA LEU GLY TYR ALA SEQRES 4 A 329 LYS ALA ILE ASN ALA LEU LYS SER PHE HIS LYS PRO VAL SEQRES 5 A 329 THR SER TYR GLN GLU ALA CYS SER ILE PRO GLY ILE GLY SEQRES 6 A 329 LYS ARG MET ALA GLU LYS ILE ILE GLU ILE LEU GLU SER SEQRES 7 A 329 GLY HIS LEU ARG LYS LEU ASP HIS ILE SER GLU SER VAL SEQRES 8 A 329 PRO VAL LEU GLU LEU PHE SER ASN ILE TRP GLY ALA GLY SEQRES 9 A 329 THR LYS THR ALA GLN MET TRP TYR GLN GLN GLY PHE ARG SEQRES 10 A 329 SER LEU GLU ASP ILE ARG SER GLN ALA SER LEU THR THR SEQRES 11 A 329 GLN GLN ALA ILE GLY LEU LYS HIS TYR SER ASP PHE LEU SEQRES 12 A 329 GLU ARG MET PRO ARG GLU GLU ALA THR GLU ILE GLU GLN SEQRES 13 A 329 THR VAL GLN LYS ALA ALA GLN ALA PHE ASN SER GLY LEU SEQRES 14 A 329 LEU CYS VAL ALA CYS GLY SER TYR ARG ARG GLY LYS ALA SEQRES 15 A 329 THR CYS GLY ASP VAL ASP VAL LEU ILE THR HIS PRO ASP SEQRES 16 A 329 GLY ARG SER HIS ARG GLY ILE PHE SER ARG LEU LEU ASP SEQRES 17 A 329 SER LEU ARG GLN GLU GLY PHE LEU THR ASP ASP LEU VAL SEQRES 18 A 329 LYS GLY GLU THR LYS TYR LEU GLY VAL CYS ARG LEU PRO SEQRES 19 A 329 GLY PRO GLY ARG ARG HIS ARG ARG LEU ASP ILE ILE VAL SEQRES 20 A 329 VAL PRO TYR SER GLU PHE ALA CYS ALA LEU LEU TYR PHE SEQRES 21 A 329 THR GLY SER ALA HIS PHE ASN ARG SER MET ARG ALA LEU SEQRES 22 A 329 ALA LYS THR LYS GLY MET SER LEU SER GLU HIS ALA LEU SEQRES 23 A 329 SER THR ALA VAL VAL ARG ASN THR HIS GLY CYS LYS VAL SEQRES 24 A 329 GLY PRO GLY ARG VAL LEU PRO THR PRO THR GLU LYS ASP SEQRES 25 A 329 VAL PHE ARG LEU LEU GLY LEU PRO TYR ARG GLU PRO ALA SEQRES 26 A 329 GLU ARG ASP TRP SEQRES 1 T 11 DC DG DG DC DA DA DT DA DC DT DG SEQRES 1 P 6 DC DA DG DT DA DT SEQRES 1 D 4 DG DC DC DG HET D3T A 576 28 HET MG A 577 1 HET NA A 578 1 HETNAM D3T 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION FORMUL 5 D3T C10 H17 N2 O13 P3 FORMUL 6 MG MG 2+ FORMUL 7 NA NA 1+ FORMUL 8 HOH *156(H2 O) HELIX 1 1 ILE A 256 GLN A 270 1 15 HELIX 2 2 ASP A 272 LEU A 286 1 15 HELIX 3 3 LYS A 287 PHE A 289 5 3 HELIX 4 4 SER A 295 SER A 301 1 7 HELIX 5 5 GLY A 306 SER A 319 1 14 HELIX 6 6 LEU A 322 HIS A 327 1 6 HELIX 7 7 GLU A 330 SER A 339 1 10 HELIX 8 8 GLY A 345 GLN A 355 1 11 HELIX 9 9 SER A 359 ALA A 367 1 9 HELIX 10 10 THR A 370 HIS A 379 1 10 HELIX 11 11 TYR A 380 GLU A 385 5 6 HELIX 12 12 ARG A 389 PHE A 406 1 18 HELIX 13 13 CYS A 415 ARG A 420 1 6 HELIX 14 14 GLY A 442 GLU A 454 1 13 HELIX 15 15 PRO A 495 SER A 497 5 3 HELIX 16 16 GLU A 498 GLY A 508 1 11 HELIX 17 17 SER A 509 LYS A 523 1 15 HELIX 18 18 THR A 555 LEU A 563 1 9 HELIX 19 19 GLU A 569 ASP A 574 5 6 SHEET 1 A 2 MET A 387 PRO A 388 0 SHEET 2 A 2 THR A 424 CYS A 425 -1 O CYS A 425 N MET A 387 SHEET 1 B 5 LEU A 411 ALA A 414 0 SHEET 2 B 5 VAL A 428 THR A 433 -1 O LEU A 431 N VAL A 413 SHEET 3 B 5 ARG A 487 VAL A 493 1 O ASP A 490 N VAL A 430 SHEET 4 B 5 LYS A 472 CYS A 477 -1 N GLY A 475 O LEU A 489 SHEET 5 B 5 LEU A 457 LYS A 463 -1 N THR A 458 O VAL A 476 SHEET 1 C 3 SER A 526 LEU A 527 0 SHEET 2 C 3 LEU A 532 THR A 534 -1 O SER A 533 N SER A 526 SHEET 3 C 3 ARG A 549 LEU A 551 -1 O LEU A 551 N LEU A 532 SHEET 1 D 2 VAL A 537 ARG A 538 0 SHEET 2 D 2 LYS A 544 GLY A 546 -1 O VAL A 545 N VAL A 537 LINK O HOH A 4 NA NA A 578 1555 1555 2.97 LINK O HOH A 87 MG MG A 577 1555 1555 2.41 LINK O SER A 339 NA NA A 578 1555 1555 2.87 LINK O ILE A 341 NA NA A 578 1555 1555 3.11 LINK O ALA A 344 NA NA A 578 1555 1555 3.00 LINK OD2 ASP A 427 MG MG A 577 1555 1555 2.36 LINK O ASP A 427 MG MG A 577 1555 1555 2.95 LINK OD2 ASP A 429 MG MG A 577 1555 1555 2.55 LINK O3G D3T A 576 MG MG A 577 1555 1555 2.40 LINK O1B D3T A 576 MG MG A 577 1555 1555 2.48 LINK O1A D3T A 576 MG MG A 577 1555 1555 2.57 LINK NA NA A 578 OP1 DA P 5 1555 1555 2.91 LINK NA NA A 578 O HOH P 95 1555 1555 3.10 CISPEP 1 GLY A 508 SER A 509 0 3.99 SITE 1 AC1 21 HOH A 21 HOH A 22 HOH A 87 HOH A 144 SITE 2 AC1 21 ARG A 386 GLY A 416 SER A 417 ARG A 420 SITE 3 AC1 21 CYS A 425 GLY A 426 ASP A 427 ASP A 429 SITE 4 AC1 21 TYR A 505 PHE A 506 GLY A 508 ALA A 510 SITE 5 AC1 21 ASN A 513 MG A 577 DT P 6 HOH P 17 SITE 6 AC1 21 DA T 5 SITE 1 AC2 4 HOH A 87 ASP A 427 ASP A 429 D3T A 576 SITE 1 AC3 5 HOH A 4 SER A 339 ILE A 341 ALA A 344 SITE 2 AC3 5 DA P 5 CRYST1 56.177 63.235 140.382 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017801 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015814 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007123 0.00000