HEADER TRANSPORT PROTEIN 06-APR-10 3MGL TITLE CRYSTAL STRUCTURE OF PERMEASE FAMILY PROTEIN FROM VIBRIO CHOLERAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFATE PERMEASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR EL TOR; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 STRAIN: N16961; SOURCE 5 GENE: VC_A0077; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS PSI2, MCSG, STRUCTURAL GENOMICS, SULFATE PERMEASE FAMILY PROTEIN, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,N.MARSHALL,J.BEARDEN,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 2 08-NOV-17 3MGL 1 REMARK REVDAT 1 21-APR-10 3MGL 0 JRNL AUTH C.CHANG,N.MARSHALL,J.BEARDEN,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF PERMEASE FAMILY PROTEIN FROM VIBRIO JRNL TITL 2 CHOLERAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 13300 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 642 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 868 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.1480 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.2220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1975 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.230 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.149 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.864 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2023 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2734 ; 1.278 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 254 ; 5.082 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;34.620 ;23.882 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 362 ;15.753 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;17.413 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 315 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1495 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1266 ; 0.782 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2036 ; 1.437 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 757 ; 2.665 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 698 ; 4.348 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2023 ; 1.268 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 423 A 440 REMARK 3 ORIGIN FOR THE GROUP (A): 52.7685 64.4621 28.5450 REMARK 3 T TENSOR REMARK 3 T11: 0.1458 T22: 0.0817 REMARK 3 T33: 0.1236 T12: 0.0290 REMARK 3 T13: -0.0386 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 8.1889 L22: 4.1071 REMARK 3 L33: 14.4178 L12: 1.7726 REMARK 3 L13: -1.0699 L23: -5.7499 REMARK 3 S TENSOR REMARK 3 S11: 0.2962 S12: -0.3038 S13: -0.1219 REMARK 3 S21: 0.3997 S22: -0.2542 S23: -0.2872 REMARK 3 S31: -0.6164 S32: 0.0970 S33: -0.0420 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 441 A 534 REMARK 3 ORIGIN FOR THE GROUP (A): 37.4654 73.8386 17.1450 REMARK 3 T TENSOR REMARK 3 T11: 0.0622 T22: 0.0507 REMARK 3 T33: 0.0468 T12: -0.0188 REMARK 3 T13: -0.0103 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 2.9781 L22: 3.4240 REMARK 3 L33: 1.8111 L12: -0.3515 REMARK 3 L13: -0.0111 L23: 0.8289 REMARK 3 S TENSOR REMARK 3 S11: -0.0851 S12: 0.0728 S13: 0.1401 REMARK 3 S21: -0.2024 S22: 0.0552 S23: 0.1287 REMARK 3 S31: -0.0152 S32: -0.0864 S33: 0.0299 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 535 A 550 REMARK 3 ORIGIN FOR THE GROUP (A): 45.3467 61.1023 24.4344 REMARK 3 T TENSOR REMARK 3 T11: 0.1261 T22: 0.1312 REMARK 3 T33: 0.1187 T12: -0.0092 REMARK 3 T13: -0.0050 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 15.9196 L22: 16.7917 REMARK 3 L33: 12.3032 L12: -7.9156 REMARK 3 L13: -4.8583 L23: 6.8991 REMARK 3 S TENSOR REMARK 3 S11: -0.1672 S12: -0.0685 S13: -0.4445 REMARK 3 S21: 0.5019 S22: 0.2777 S23: -0.6389 REMARK 3 S31: 0.9299 S32: -0.0995 S33: -0.1105 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 423 B 440 REMARK 3 ORIGIN FOR THE GROUP (A): 37.5214 64.1290 42.3529 REMARK 3 T TENSOR REMARK 3 T11: 0.1603 T22: 0.0658 REMARK 3 T33: 0.0895 T12: -0.0528 REMARK 3 T13: 0.0306 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 6.0414 L22: 5.9532 REMARK 3 L33: 19.7279 L12: -2.2344 REMARK 3 L13: -0.5941 L23: 4.0135 REMARK 3 S TENSOR REMARK 3 S11: 0.0834 S12: 0.0113 S13: -0.1370 REMARK 3 S21: -0.1879 S22: -0.1703 S23: 0.1571 REMARK 3 S31: 0.0953 S32: 0.0622 S33: 0.0869 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 441 B 534 REMARK 3 ORIGIN FOR THE GROUP (A): 53.2726 73.8472 53.2484 REMARK 3 T TENSOR REMARK 3 T11: 0.0790 T22: 0.0467 REMARK 3 T33: 0.0322 T12: 0.0225 REMARK 3 T13: 0.0027 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 4.8771 L22: 3.4495 REMARK 3 L33: 2.7679 L12: 1.3359 REMARK 3 L13: -0.4601 L23: -0.9759 REMARK 3 S TENSOR REMARK 3 S11: -0.0907 S12: -0.0811 S13: 0.0629 REMARK 3 S21: 0.1937 S22: 0.0525 S23: -0.1059 REMARK 3 S31: -0.0543 S32: 0.0503 S33: 0.0382 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 535 B 550 REMARK 3 ORIGIN FOR THE GROUP (A): 44.7886 61.0446 46.2037 REMARK 3 T TENSOR REMARK 3 T11: 0.2410 T22: 0.1828 REMARK 3 T33: 0.1720 T12: -0.0078 REMARK 3 T13: 0.0376 T23: -0.0327 REMARK 3 L TENSOR REMARK 3 L11: 17.6424 L22: 11.8326 REMARK 3 L33: 12.2228 L12: 7.2799 REMARK 3 L13: -6.5400 L23: -3.0919 REMARK 3 S TENSOR REMARK 3 S11: -0.4214 S12: 0.1321 S13: -0.7096 REMARK 3 S21: 0.2031 S22: 0.3738 S23: 0.3084 REMARK 3 S31: 0.7656 S32: -0.2436 S33: 0.0477 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MGL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058519. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97937 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13508 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 63.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.50 REMARK 200 R MERGE FOR SHELL (I) : 0.50300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 12.20 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, MLPHARE, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM IODIDE, 20% PEG3350, PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.45700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.45700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.45700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.45700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.45700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.45700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.45700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.45700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: OCTAMER WITH OPERATOR (X,Y,Z), (Y-1/2,-X+3/2,Z), (-Y+3/2,X+ REMARK 300 1/2,Z), (-X+1,-Y+2,Z) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -119.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 90.91400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 181.82800 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 136.37100 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 45.45700 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 -45.45700 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 136.37100 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 422 REMARK 465 PRO A 551 REMARK 465 SER B 422 REMARK 465 ASN B 423 REMARK 465 ALA B 424 REMARK 465 PRO B 551 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 423 CG OD1 ND2 REMARK 470 GLN A 550 CG CD OE1 NE2 REMARK 470 SER B 427 OG REMARK 470 GLU B 448 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 I IOD A 607 O HOH A 68 3655 1.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 451 64.22 -110.95 REMARK 500 GLU B 448 -70.74 -52.26 REMARK 500 PHE B 451 65.71 -113.05 REMARK 500 ASN B 511 -179.11 -64.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 552 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 606 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC36741.1 RELATED DB: TARGETDB DBREF 3MGL A 425 551 UNP Q9KN88 Q9KN88_VIBCH 425 551 DBREF 3MGL B 425 551 UNP Q9KN88 Q9KN88_VIBCH 425 551 SEQADV 3MGL SER A 422 UNP Q9KN88 EXPRESSION TAG SEQADV 3MGL ASN A 423 UNP Q9KN88 EXPRESSION TAG SEQADV 3MGL ALA A 424 UNP Q9KN88 EXPRESSION TAG SEQADV 3MGL SER B 422 UNP Q9KN88 EXPRESSION TAG SEQADV 3MGL ASN B 423 UNP Q9KN88 EXPRESSION TAG SEQADV 3MGL ALA B 424 UNP Q9KN88 EXPRESSION TAG SEQRES 1 A 130 SER ASN ALA GLU MSE SER TYR GLU LEU ALA GLN HIS GLY SEQRES 2 A 130 ARG SER THR LEU PRO ARG GLU LEU ALA VAL TYR ALA LEU SEQRES 3 A 130 GLU GLY PRO PHE PHE PHE ALA ALA ALA GLU THR PHE GLU SEQRES 4 A 130 ARG VAL MSE GLY SER ILE GLN GLU THR PRO GLN ILE LEU SEQRES 5 A 130 ILE LEU ARG LEU LYS TRP VAL PRO PHE MSE ASP ILE THR SEQRES 6 A 130 GLY ILE GLN THR LEU GLU GLU MSE ILE GLN SER PHE HIS SEQRES 7 A 130 LYS ARG GLY ILE LYS VAL LEU ILE SER GLY ALA ASN SER SEQRES 8 A 130 ARG VAL SER GLN LYS LEU VAL LYS ALA GLY ILE VAL LYS SEQRES 9 A 130 LEU VAL GLY GLU GLN ASN VAL TYR PRO VAL PHE GLU GLY SEQRES 10 A 130 ALA LEU SER ALA ALA LEU THR GLU ILE GLU ALA GLN PRO SEQRES 1 B 130 SER ASN ALA GLU MSE SER TYR GLU LEU ALA GLN HIS GLY SEQRES 2 B 130 ARG SER THR LEU PRO ARG GLU LEU ALA VAL TYR ALA LEU SEQRES 3 B 130 GLU GLY PRO PHE PHE PHE ALA ALA ALA GLU THR PHE GLU SEQRES 4 B 130 ARG VAL MSE GLY SER ILE GLN GLU THR PRO GLN ILE LEU SEQRES 5 B 130 ILE LEU ARG LEU LYS TRP VAL PRO PHE MSE ASP ILE THR SEQRES 6 B 130 GLY ILE GLN THR LEU GLU GLU MSE ILE GLN SER PHE HIS SEQRES 7 B 130 LYS ARG GLY ILE LYS VAL LEU ILE SER GLY ALA ASN SER SEQRES 8 B 130 ARG VAL SER GLN LYS LEU VAL LYS ALA GLY ILE VAL LYS SEQRES 9 B 130 LEU VAL GLY GLU GLN ASN VAL TYR PRO VAL PHE GLU GLY SEQRES 10 B 130 ALA LEU SER ALA ALA LEU THR GLU ILE GLU ALA GLN PRO MODRES 3MGL MSE A 426 MET SELENOMETHIONINE MODRES 3MGL MSE A 463 MET SELENOMETHIONINE MODRES 3MGL MSE A 483 MET SELENOMETHIONINE MODRES 3MGL MSE A 494 MET SELENOMETHIONINE MODRES 3MGL MSE B 426 MET SELENOMETHIONINE MODRES 3MGL MSE B 463 MET SELENOMETHIONINE MODRES 3MGL MSE B 483 MET SELENOMETHIONINE MODRES 3MGL MSE B 494 MET SELENOMETHIONINE HET MSE A 426 8 HET MSE A 463 8 HET MSE A 483 8 HET MSE A 494 8 HET MSE B 426 8 HET MSE B 463 8 HET MSE B 483 8 HET MSE B 494 8 HET IOD A 602 1 HET IOD A 603 1 HET IOD A 604 1 HET IOD A 605 1 HET IOD A 607 1 HET IOD A 552 1 HET IOD B 601 1 HET IOD B 602 1 HET IOD B 603 1 HET IOD B 604 1 HET IOD B 606 1 HETNAM MSE SELENOMETHIONINE HETNAM IOD IODIDE ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 IOD 11(I 1-) FORMUL 14 HOH *68(H2 O) HELIX 1 1 ASN A 423 HIS A 433 1 11 HELIX 2 2 PHE A 452 ILE A 466 1 15 HELIX 3 3 ASP A 484 ARG A 501 1 18 HELIX 4 4 ASN A 511 ALA A 521 1 11 HELIX 5 5 GLY A 522 GLY A 528 1 7 HELIX 6 6 VAL A 535 GLN A 550 1 16 HELIX 7 7 GLU B 425 HIS B 433 1 9 HELIX 8 8 PHE B 452 ILE B 466 1 15 HELIX 9 9 ASP B 484 ARG B 501 1 18 HELIX 10 10 ASN B 511 ALA B 521 1 11 HELIX 11 11 GLY B 522 GLY B 528 1 7 HELIX 12 12 VAL B 535 ALA B 549 1 15 SHEET 1 A 4 LEU A 442 GLU A 448 0 SHEET 2 A 4 ILE A 472 TRP A 479 1 O ILE A 474 N TYR A 445 SHEET 3 A 4 LYS A 504 SER A 508 1 O LEU A 506 N LEU A 475 SHEET 4 A 4 VAL A 532 TYR A 533 1 O TYR A 533 N ILE A 507 SHEET 1 B 4 LEU B 442 ALA B 446 0 SHEET 2 B 4 ILE B 472 ARG B 476 1 O ARG B 476 N TYR B 445 SHEET 3 B 4 LYS B 504 SER B 508 1 O LEU B 506 N LEU B 473 SHEET 4 B 4 VAL B 532 TYR B 533 1 O TYR B 533 N ILE B 507 LINK C GLU A 425 N MSE A 426 1555 1555 1.33 LINK C MSE A 426 N SER A 427 1555 1555 1.32 LINK C VAL A 462 N MSE A 463 1555 1555 1.33 LINK C MSE A 463 N GLY A 464 1555 1555 1.33 LINK C PHE A 482 N MSE A 483 1555 1555 1.33 LINK C MSE A 483 N ASP A 484 1555 1555 1.32 LINK C GLU A 493 N MSE A 494 1555 1555 1.33 LINK C MSE A 494 N ILE A 495 1555 1555 1.33 LINK C GLU B 425 N MSE B 426 1555 1555 1.32 LINK C VAL B 462 N MSE B 463 1555 1555 1.33 LINK C MSE B 463 N GLY B 464 1555 1555 1.33 LINK C PHE B 482 N MSE B 483 1555 1555 1.33 LINK C MSE B 483 N ASP B 484 1555 1555 1.32 LINK C GLU B 493 N MSE B 494 1555 1555 1.33 LINK C MSE B 494 N ILE B 495 1555 1555 1.33 LINK C MSE B 426 N SER B 427 1555 1555 1.34 SITE 1 AC1 4 HOH A 11 ARG A 476 LYS A 478 SER A 508 SITE 1 AC2 2 MSE A 483 LYS A 517 SITE 1 AC3 1 PRO A 534 SITE 1 AC4 1 PHE A 451 SITE 1 AC5 2 HOH A 68 LYS A 517 SITE 1 AC6 2 LYS A 525 GLN B 516 SITE 1 AC7 3 MSE B 483 ARG B 513 LYS B 517 SITE 1 AC8 2 PRO B 534 GLY B 538 SITE 1 AC9 5 HOH B 59 ARG B 476 LYS B 478 SER B 508 SITE 2 AC9 5 GLY B 509 SITE 1 BC1 1 PHE B 451 CRYST1 90.914 90.914 65.210 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010999 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010999 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015335 0.00000