HEADER OXIDOREDUCTASE 07-APR-10 3MGU TITLE STRUCTURE OF S. CEREVISIAE TPA1 PROTEIN, A PROLINE HYDROXYLASE TITLE 2 MODIFYING RIBOSOMAL PROTEIN RPS23 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PKHD-TYPE HYDROXYLASE TPA1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TERMINATION AND POLYADENYLATION PROTEIN 1; COMPND 5 EC: 1.14.11.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: TPA1, YER049W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA DE3 PLYSS NOVAGEN; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TRANSLATION TERMINATION, PROLYL-4-HYDROXYLASE, DIOXYGENASE, DSBH, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.HENRI,D.RISPAL,E.BAYART,H.VAN TILBEURGH,B.SERAPHIN,M.GRAILLE REVDAT 2 03-JAN-18 3MGU 1 TITLE REVDAT 1 14-JUL-10 3MGU 0 JRNL AUTH J.HENRI,D.RISPAL,E.BAYART,H.VAN TILBEURGH,B.SERAPHIN, JRNL AUTH 2 M.GRAILLE JRNL TITL STRUCTURAL AND FUNCTIONAL INSIGHTS INTO S. CEREVISIAE TPA1, JRNL TITL 2 A PUTATIVE PROLYL HYDROXYLASE INFLUENCING TRANSLATION JRNL TITL 3 TERMINATION AND TRANSCRIPTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.070 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 22109 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1106 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.7042 - 5.5758 0.99 2760 146 0.2342 0.2594 REMARK 3 2 5.5758 - 4.4268 1.00 2655 140 0.1902 0.2365 REMARK 3 3 4.4268 - 3.8675 0.99 2628 138 0.1875 0.2350 REMARK 3 4 3.8675 - 3.5140 0.99 2619 138 0.2149 0.2975 REMARK 3 5 3.5140 - 3.2622 0.99 2603 137 0.2512 0.3583 REMARK 3 6 3.2622 - 3.0699 0.99 2607 137 0.3027 0.3711 REMARK 3 7 3.0699 - 2.9162 0.99 2567 135 0.3358 0.4516 REMARK 3 8 2.9162 - 2.7893 0.98 2564 135 0.3602 0.3879 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 49.32 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -22.94300 REMARK 3 B22 (A**2) : 51.41700 REMARK 3 B33 (A**2) : -28.47400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4481 REMARK 3 ANGLE : 1.077 6048 REMARK 3 CHIRALITY : 0.075 646 REMARK 3 PLANARITY : 0.004 772 REMARK 3 DIHEDRAL : 19.737 1658 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3MGU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058528. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796, 0.9794, 0.9843 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22109 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 46.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.580 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.64 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH7.5, 44% REMARK 280 METHYLPENTANEDIOL, 0.1M MG(NO3)2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.78500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 102.78500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.59000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.42000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.59000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.42000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 102.78500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.59000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.42000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 102.78500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.59000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.42000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -102.78500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ARG A 3 REMARK 465 LYS A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 GLU A 7 REMARK 465 VAL A 8 REMARK 465 LYS A 9 REMARK 465 GLY A 10 REMARK 465 GLU A 11 REMARK 465 LYS A 12 REMARK 465 GLU A 13 REMARK 465 ARG A 14 REMARK 465 ASN A 15 REMARK 465 SER A 16 REMARK 465 LYS A 17 REMARK 465 GLN A 18 REMARK 465 ILE A 19 REMARK 465 SER A 20 REMARK 465 LEU A 21 REMARK 465 GLU A 22 REMARK 465 GLU A 23 REMARK 465 ASP A 24 REMARK 465 LYS A 25 REMARK 465 GLY A 94 REMARK 465 ASP A 95 REMARK 465 LEU A 96 REMARK 465 ALA A 97 REMARK 465 ASN A 98 REMARK 465 LEU A 99 REMARK 465 SER A 100 REMARK 465 GLY A 101 REMARK 465 LEU A 102 REMARK 465 ASP A 103 REMARK 465 TRP A 104 REMARK 465 ASP A 105 REMARK 465 ASP A 106 REMARK 465 LEU A 107 REMARK 465 SER A 108 REMARK 465 ARG A 109 REMARK 465 LEU A 110 REMARK 465 SER A 269 REMARK 465 THR A 270 REMARK 465 LEU A 271 REMARK 465 ALA A 272 REMARK 465 GLN A 273 REMARK 465 ILE A 274 REMARK 465 GLU A 275 REMARK 465 GLY A 306 REMARK 465 ASP A 307 REMARK 465 ALA A 308 REMARK 465 GLY A 309 REMARK 465 ALA A 310 REMARK 465 LYS A 311 REMARK 465 THR A 312 REMARK 465 ASP A 313 REMARK 465 ASN A 314 REMARK 465 THR A 315 REMARK 465 PRO A 316 REMARK 465 LYS A 317 REMARK 465 GLU A 318 REMARK 465 SER A 319 REMARK 465 MET A 320 REMARK 465 THR A 321 REMARK 465 SER A 322 REMARK 465 VAL A 323 REMARK 465 ILE A 324 REMARK 465 SER A 325 REMARK 465 ASP A 326 REMARK 465 SER A 327 REMARK 465 VAL A 328 REMARK 465 LYS A 329 REMARK 465 LEU A 330 REMARK 465 ASP A 455 REMARK 465 ALA A 456 REMARK 465 SER A 457 REMARK 465 GLY A 458 REMARK 465 ASN A 459 REMARK 465 ASP A 562 REMARK 465 GLU A 563 REMARK 465 ASP A 564 REMARK 465 ASN A 565 REMARK 465 LYS A 566 REMARK 465 GLN A 567 REMARK 465 TYR A 568 REMARK 465 LEU A 569 REMARK 465 LYS A 570 REMARK 465 GLU A 571 REMARK 465 ASP A 572 REMARK 465 VAL A 573 REMARK 465 GLU A 574 REMARK 465 ASP A 575 REMARK 465 ALA A 576 REMARK 465 SER A 577 REMARK 465 VAL A 578 REMARK 465 TYR A 579 REMARK 465 ARG A 580 REMARK 465 ALA A 581 REMARK 465 ASP A 582 REMARK 465 ASP A 583 REMARK 465 SER A 584 REMARK 465 ASP A 636 REMARK 465 GLU A 637 REMARK 465 ASP A 638 REMARK 465 GLY A 639 REMARK 465 GLN A 640 REMARK 465 GLU A 641 REMARK 465 ASP A 642 REMARK 465 GLU A 643 REMARK 465 ALA A 644 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 365 CA - CB - CG ANGL. DEV. = 15.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 29 37.15 -97.47 REMARK 500 PHE A 30 -148.64 -98.46 REMARK 500 GLN A 92 -156.01 -105.17 REMARK 500 TYR A 131 -64.32 -91.47 REMARK 500 LYS A 134 34.36 70.98 REMARK 500 LYS A 152 122.93 -35.42 REMARK 500 ARG A 167 -66.08 -100.05 REMARK 500 PRO A 175 -175.37 -61.56 REMARK 500 LEU A 196 136.28 -179.03 REMARK 500 PHE A 212 -78.79 -37.86 REMARK 500 ASN A 213 41.50 -89.42 REMARK 500 SER A 225 49.97 -76.31 REMARK 500 ALA A 262 0.60 -66.94 REMARK 500 ASN A 267 93.87 -65.69 REMARK 500 ASP A 287 58.62 -97.01 REMARK 500 GLN A 366 59.96 -119.86 REMARK 500 SER A 369 74.83 25.39 REMARK 500 ALA A 412 173.02 175.03 REMARK 500 ARG A 413 106.67 -168.13 REMARK 500 ASN A 437 57.28 -97.43 REMARK 500 PHE A 511 169.65 178.42 REMARK 500 ASN A 526 128.93 -177.64 REMARK 500 TRP A 546 35.95 -78.44 REMARK 500 SER A 548 117.85 -163.67 REMARK 500 GLU A 550 0.31 -60.22 REMARK 500 MET A 558 163.68 179.58 REMARK 500 TYR A 614 122.20 -27.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A1501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 227 NE2 REMARK 620 2 ASP A 161 OD1 78.5 REMARK 620 3 HIS A 159 NE2 78.2 61.8 REMARK 620 4 ASP A 161 OD2 71.1 51.4 109.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 1501 DBREF 3MGU A 1 644 UNP P40032 TPA1_YEAST 1 644 SEQRES 1 A 644 MET LYS ARG LYS THR ALA GLU VAL LYS GLY GLU LYS GLU SEQRES 2 A 644 ARG ASN SER LYS GLN ILE SER LEU GLU GLU ASP LYS ILE SEQRES 3 A 644 LYS GLY MET PHE ASN PRO LYS ILE TRP ASP LYS THR PHE SEQRES 4 A 644 GLN ASP GLY LEU LYS LYS GLU ILE GLU ASP SER GLN PRO SEQRES 5 A 644 TYR ASN TRP GLY THR ILE HIS GLU LEU VAL ASN ASP ASP SEQRES 6 A 644 LEU LEU ARG ALA VAL ARG LYS GLU ILE GLU THR GLU ILE SEQRES 7 A 644 HIS PHE THR LYS LYS GLU THR ASP ILE TYR ARG VAL ASN SEQRES 8 A 644 GLN SER GLY ASP LEU ALA ASN LEU SER GLY LEU ASP TRP SEQRES 9 A 644 ASP ASP LEU SER ARG LEU PRO ASN LEU PHE LYS LEU ARG SEQRES 10 A 644 GLN ILE LEU TYR SER LYS GLN TYR ARG ASP PHE PHE GLY SEQRES 11 A 644 TYR VAL THR LYS ALA GLY LYS LEU SER GLY SER LYS THR SEQRES 12 A 644 ASP MET SER ILE ASN THR TYR THR LYS GLY CYS HIS LEU SEQRES 13 A 644 LEU THR HIS ASP ASP VAL ILE GLY SER ARG ARG ILE SER SEQRES 14 A 644 PHE ILE LEU TYR LEU PRO ASP PRO ASP ARG LYS TRP LYS SEQRES 15 A 644 SER HIS TYR GLY GLY GLY LEU ARG LEU PHE PRO SER ILE SEQRES 16 A 644 LEU PRO ASN VAL PRO HIS SER ASP PRO SER ALA LYS LEU SEQRES 17 A 644 VAL PRO GLN PHE ASN GLN ILE ALA PHE PHE LYS VAL LEU SEQRES 18 A 644 PRO GLY PHE SER PHE HIS ASP VAL GLU GLU VAL LYS VAL SEQRES 19 A 644 ASP LYS HIS ARG LEU SER ILE GLN GLY TRP TYR HIS ILE SEQRES 20 A 644 PRO GLN VAL GLY GLU GLU GLY TYR ILE PRO GLY GLU GLU SEQRES 21 A 644 GLU ALA TRP VAL ARG ASN ASN THR SER THR LEU ALA GLN SEQRES 22 A 644 ILE GLU SER ASN VAL LEU GLU ASP PHE GLU PHE PRO LYS SEQRES 23 A 644 ASP GLU ARG ASN ILE LEU SER PHE HIS GLU VAL LYS HIS SEQRES 24 A 644 PHE GLU LYS MET LEU LYS GLY ASP ALA GLY ALA LYS THR SEQRES 25 A 644 ASP ASN THR PRO LYS GLU SER MET THR SER VAL ILE SER SEQRES 26 A 644 ASP SER VAL LYS LEU SER GLU ALA GLU PHE THR TYR LEU SEQRES 27 A 644 SER GLN TYR ILE SER PRO GLU HIS LEU SER SER LYS GLY SEQRES 28 A 644 ILE GLU LYS LEU GLN LYS GLN PHE VAL GLU ASN SER SER SEQRES 29 A 644 LEU GLN ILE GLU SER PHE LEU ASN ASP ASP LYS SER GLU SEQRES 30 A 644 LEU LEU LYS LYS VAL ILE LYS GLN LYS GLU LEU GLU GLN SEQRES 31 A 644 GLU CYS PRO TYR HIS SER LYS ASP VAL LYS ALA PRO TRP SEQRES 32 A 644 LYS THR ALA ILE PRO PRO HIS LYS ALA ARG TYR LEU TYR SEQRES 33 A 644 ILE ASP GLY LYS GLU TYR ARG ASN PHE GLN THR GLU ALA SEQRES 34 A 644 ASP ILE LEU GLU ALA LEU ASN ASN ASN ASP LEU PRO ASN SEQRES 35 A 644 PHE GLN PHE THR LYS ASP ALA ILE LYS ILE ILE SER ASP SEQRES 36 A 644 ALA SER GLY ASN SER ARG GLU ASN ASN PHE ASP ALA GLU SEQRES 37 A 644 LEU ALA LEU ILE ASP LEU ALA VAL PHE HIS LYS SER THR SEQRES 38 A 644 ILE PHE LYS LYS TYR LEU ALA LEU LEU THR SER LEU CYS SEQRES 39 A 644 PRO VAL SER GLU GLN ILE LEU ILE ARG ARG PHE ARG PRO SEQRES 40 A 644 GLY MET ASP PHE THR LEU ALA THR LYS CYS ARG PHE ASN SEQRES 41 A 644 GLU LEU LEU LYS SER ASN PRO ASP ILE ILE ASP ALA VAL SEQRES 42 A 644 LEU GLU GLY THR LEU CYS LEU THR PRO SER ALA GLY TRP SEQRES 43 A 644 GLU SER GLY GLU LEU GLY GLY TYR GLU LEU TYR MET MET SEQRES 44 A 644 ASP ASP ASP GLU ASP ASN LYS GLN TYR LEU LYS GLU ASP SEQRES 45 A 644 VAL GLU ASP ALA SER VAL TYR ARG ALA ASP ASP SER GLY SEQRES 46 A 644 ASP SER VAL LEU ILE ASN ASP PRO PRO ALA TRP ASN THR SEQRES 47 A 644 PHE ASN LEU VAL LEU ARG ASP GLU SER VAL LEU GLU PHE SEQRES 48 A 644 VAL LYS TYR VAL SER TRP SER ALA LYS SER SER ARG TRP SEQRES 49 A 644 ASP VAL LYS MET LYS TRP ASP VAL LYS SER CYS ASP GLU SEQRES 50 A 644 ASP GLY GLN GLU ASP GLU ALA HET FE2 A1501 1 HETNAM FE2 FE (II) ION FORMUL 2 FE2 FE 2+ FORMUL 3 HOH *33(H2 O) HELIX 1 1 ASN A 31 TRP A 35 5 5 HELIX 2 2 ASP A 36 SER A 50 1 15 HELIX 3 3 ASN A 63 ILE A 78 1 16 HELIX 4 4 ASN A 112 TYR A 121 1 10 HELIX 5 5 SER A 122 THR A 133 1 12 HELIX 6 6 LYS A 182 GLY A 186 5 5 HELIX 7 7 GLU A 260 ARG A 265 1 6 HELIX 8 8 SER A 276 GLU A 283 5 8 HELIX 9 9 SER A 293 LEU A 304 1 12 HELIX 10 10 SER A 331 SER A 339 1 9 HELIX 11 11 SER A 343 SER A 348 1 6 HELIX 12 12 SER A 348 SER A 363 1 16 HELIX 13 13 ASN A 372 GLN A 390 1 19 HELIX 14 14 HIS A 395 VAL A 399 5 5 HELIX 15 15 THR A 427 ASN A 437 1 11 HELIX 16 16 ASN A 442 ILE A 453 1 12 HELIX 17 17 GLU A 462 HIS A 478 1 17 HELIX 18 18 SER A 480 SER A 492 1 13 SHEET 1 A 5 GLY A 56 ILE A 58 0 SHEET 2 A 5 ILE A 215 LYS A 219 -1 O ILE A 215 N ILE A 58 SHEET 3 A 5 ARG A 166 LEU A 174 -1 N SER A 169 O PHE A 218 SHEET 4 A 5 HIS A 237 HIS A 246 -1 O TYR A 245 N ARG A 167 SHEET 5 A 5 MET A 145 THR A 151 -1 N SER A 146 O GLN A 242 SHEET 1 B 6 LYS A 82 GLU A 84 0 SHEET 2 B 6 TYR A 88 ASN A 91 -1 O VAL A 90 N LYS A 83 SHEET 3 B 6 HIS A 155 HIS A 159 -1 O HIS A 155 N ARG A 89 SHEET 4 B 6 PHE A 226 VAL A 229 -1 O HIS A 227 N HIS A 159 SHEET 5 B 6 LEU A 189 PHE A 192 -1 N PHE A 192 O PHE A 226 SHEET 6 B 6 ALA A 206 LEU A 208 -1 O ALA A 206 N LEU A 191 SHEET 1 C 5 ASN A 290 ILE A 291 0 SHEET 2 C 5 SER A 497 PHE A 505 -1 O GLU A 498 N ASN A 290 SHEET 3 C 5 ARG A 623 SER A 634 -1 O LYS A 627 N LEU A 501 SHEET 4 C 5 LEU A 415 ILE A 417 0 SHEET 5 C 5 LYS A 404 THR A 405 -1 N LYS A 404 O TYR A 416 SHEET 1 D 6 SER A 364 ILE A 367 0 SHEET 2 D 6 TRP A 596 ARG A 604 -1 O LEU A 601 N LEU A 365 SHEET 3 D 6 ILE A 529 LEU A 540 -1 N THR A 537 O ASN A 600 SHEET 4 D 6 ARG A 623 SER A 634 -1 O MET A 628 N GLY A 536 SHEET 5 D 6 SER A 497 PHE A 505 -1 N LEU A 501 O LYS A 627 SHEET 6 D 6 LEU A 493 PRO A 495 0 SHEET 1 E 2 ALA A 412 ARG A 413 0 SHEET 2 E 2 PHE A 511 THR A 512 -1 O PHE A 511 N ARG A 413 SHEET 1 F 3 VAL A 588 ASP A 592 0 SHEET 2 F 3 GLU A 555 MET A 559 -1 N GLU A 555 O ASP A 592 SHEET 3 F 3 VAL A 608 VAL A 612 -1 O LEU A 609 N MET A 558 SSBOND 1 CYS A 494 CYS A 635 1555 1555 2.05 LINK NE2 HIS A 227 FE FE2 A1501 1555 1555 2.34 LINK OD1 ASP A 161 FE FE2 A1501 1555 1555 2.37 LINK NE2 HIS A 159 FE FE2 A1501 1555 1555 2.59 LINK OD2 ASP A 161 FE FE2 A1501 1555 1555 2.66 CISPEP 1 GLN A 51 PRO A 52 0 5.01 CISPEP 2 PHE A 284 PRO A 285 0 -2.09 CISPEP 3 ALA A 401 PRO A 402 0 6.80 CISPEP 4 ILE A 407 PRO A 408 0 1.40 CISPEP 5 GLU A 547 SER A 548 0 -3.58 CISPEP 6 SER A 548 GLY A 549 0 -8.89 SITE 1 AC1 3 HIS A 159 ASP A 161 HIS A 227 CRYST1 81.180 104.840 205.570 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012318 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009538 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004865 0.00000