HEADER IMMUNE SYSTEM 07-APR-10 3MHD TITLE CRYSTAL STRUCTURE OF DCR3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 6B; COMPND 3 CHAIN: D; COMPND 4 FRAGMENT: UNP RESIDUES 30-195; COMPND 5 SYNONYM: DECOY RECEPTOR FOR FAS LIGAND, DECOY RECEPTOR 3, DCR3, M68; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DCR3, TNFRSF6B, TR6; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7215; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: S2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMT/BIP/V5-HIS KEYWDS DCR3, TNFR, DECOY RECEPTOR, GLYCOPROTEIN, SECRETED, RECEPTOR, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.ZHAN,Y.PATSKOVSKY,Q.YAN,Z.LI,U.A.RAMAGOPAL,S.G.NATHENSON,S.C.ALMO REVDAT 2 06-SEP-23 3MHD 1 SEQADV REVDAT 1 23-FEB-11 3MHD 0 JRNL AUTH C.ZHAN,Y.PATSKOVSKY,Q.YAN,Z.LI,U.RAMAGOPAL,H.CHENG, JRNL AUTH 2 M.BRENOWITZ,X.HUI,S.G.NATHENSON,S.C.ALMO JRNL TITL DECOY STRATEGIES: THE STRUCTURE OF TL1A:DCR3 COMPLEX. JRNL REF STRUCTURE V. 19 162 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 21300286 JRNL DOI 10.1016/J.STR.2010.12.004 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0034 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 88.2 REMARK 3 NUMBER OF REFLECTIONS : 6010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.286 REMARK 3 R VALUE (WORKING SET) : 0.285 REMARK 3 FREE R VALUE : 0.315 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.700 REMARK 3 FREE R VALUE TEST SET COUNT : 169 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 85 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 18.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.3350 REMARK 3 BIN FREE R VALUE SET COUNT : 7 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1004 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.95000 REMARK 3 B22 (A**2) : 0.95000 REMARK 3 B33 (A**2) : -1.42000 REMARK 3 B12 (A**2) : 0.47000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.634 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.396 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.434 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 54.802 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.857 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.825 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1060 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1450 ; 1.212 ; 1.928 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 133 ; 7.869 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 53 ;29.428 ;21.509 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 147 ;19.838 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;14.289 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 146 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 858 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 372 ; 0.129 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 662 ; 0.301 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 41 ; 0.137 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.104 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.033 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 681 ; 4.144 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1071 ; 6.649 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 429 ;10.879 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 377 ;16.004 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 113 REMARK 3 ORIGIN FOR THE GROUP (A): 42.8133 0.8825 40.8147 REMARK 3 T TENSOR REMARK 3 T11: 0.4284 T22: 0.1542 REMARK 3 T33: 0.1205 T12: -0.0548 REMARK 3 T13: 0.1336 T23: -0.0617 REMARK 3 L TENSOR REMARK 3 L11: 6.0533 L22: 18.9908 REMARK 3 L33: 5.5285 L12: 5.9611 REMARK 3 L13: -1.4320 L23: -1.7600 REMARK 3 S TENSOR REMARK 3 S11: 0.2668 S12: 0.1668 S13: 0.2639 REMARK 3 S21: 1.1513 S22: 0.0522 S23: -0.3907 REMARK 3 S31: -0.8320 S32: 0.3887 S33: -0.3190 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 114 D 170 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6851 -32.8854 40.7072 REMARK 3 T TENSOR REMARK 3 T11: 0.2950 T22: 0.4509 REMARK 3 T33: 0.4665 T12: 0.0475 REMARK 3 T13: 0.2285 T23: -0.0463 REMARK 3 L TENSOR REMARK 3 L11: 19.7832 L22: 15.5264 REMARK 3 L33: 15.6153 L12: 11.0388 REMARK 3 L13: 5.5750 L23: 0.7561 REMARK 3 S TENSOR REMARK 3 S11: 0.0970 S12: 0.9969 S13: -0.8862 REMARK 3 S21: -0.6016 S22: -0.1984 S23: -0.5578 REMARK 3 S31: 0.5952 S32: -1.0258 S33: 0.1014 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE DIFFRACTION DATA WERE CORRECTED FOR REMARK 3 ANISOTROPY REMARK 4 REMARK 4 3MHD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058547. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8677 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.79300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3K51 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM ACETATE, 1MM CACL2, 0.1M REMARK 280 SODIUM CITRATE, 10% PEG 4000, PH 5.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 65.00950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.53325 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 32.00867 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 65.00950 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 37.53325 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 32.00867 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 65.00950 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 37.53325 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 32.00867 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 65.00950 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 37.53325 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.00867 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 65.00950 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 37.53325 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 32.00867 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 65.00950 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 37.53325 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 32.00867 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 75.06650 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 64.01733 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 75.06650 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 64.01733 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 75.06650 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 64.01733 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 75.06650 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 64.01733 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 75.06650 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 64.01733 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 75.06650 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 64.01733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL D 30 REMARK 465 ALA D 31 REMARK 465 GLN D 151 REMARK 465 PRO D 152 REMARK 465 CYS D 153 REMARK 465 PRO D 154 REMARK 465 PRO D 155 REMARK 465 GLY D 156 REMARK 465 CYS D 168 REMARK 465 GLN D 169 REMARK 465 PRO D 170 REMARK 465 HIS D 171 REMARK 465 ARG D 172 REMARK 465 ASN D 173 REMARK 465 CYS D 174 REMARK 465 THR D 175 REMARK 465 ALA D 176 REMARK 465 LEU D 177 REMARK 465 GLY D 178 REMARK 465 LEU D 179 REMARK 465 ALA D 180 REMARK 465 LEU D 181 REMARK 465 ASN D 182 REMARK 465 VAL D 183 REMARK 465 PRO D 184 REMARK 465 GLY D 185 REMARK 465 SER D 186 REMARK 465 SER D 187 REMARK 465 SER D 188 REMARK 465 HIS D 189 REMARK 465 ASP D 190 REMARK 465 THR D 191 REMARK 465 LEU D 192 REMARK 465 CYS D 193 REMARK 465 THR D 194 REMARK 465 SER D 195 REMARK 465 THR D 196 REMARK 465 GLY D 197 REMARK 465 HIS D 198 REMARK 465 HIS D 199 REMARK 465 HIS D 200 REMARK 465 HIS D 201 REMARK 465 HIS D 202 REMARK 465 HIS D 203 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO D 61 -169.78 -77.10 REMARK 500 ARG D 63 -165.99 -101.66 REMARK 500 PRO D 67 -156.60 -85.54 REMARK 500 PRO D 133 177.33 -59.09 REMARK 500 SER D 164 40.66 -102.67 REMARK 500 SER D 165 -46.27 -136.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3K51 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TL1A-DCR3 COMPLEX REMARK 900 RELATED ID: 2QE3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TL1A REMARK 900 RELATED ID: 3MI8 RELATED DB: PDB DBREF 3MHD D 30 195 UNP O95407 TNF6B_HUMAN 30 195 SEQADV 3MHD THR D 196 UNP O95407 EXPRESSION TAG SEQADV 3MHD GLY D 197 UNP O95407 EXPRESSION TAG SEQADV 3MHD HIS D 198 UNP O95407 EXPRESSION TAG SEQADV 3MHD HIS D 199 UNP O95407 EXPRESSION TAG SEQADV 3MHD HIS D 200 UNP O95407 EXPRESSION TAG SEQADV 3MHD HIS D 201 UNP O95407 EXPRESSION TAG SEQADV 3MHD HIS D 202 UNP O95407 EXPRESSION TAG SEQADV 3MHD HIS D 203 UNP O95407 EXPRESSION TAG SEQRES 1 D 174 VAL ALA GLU THR PRO THR TYR PRO TRP ARG ASP ALA GLU SEQRES 2 D 174 THR GLY GLU ARG LEU VAL CYS ALA GLN CYS PRO PRO GLY SEQRES 3 D 174 THR PHE VAL GLN ARG PRO CYS ARG ARG ASP SER PRO THR SEQRES 4 D 174 THR CYS GLY PRO CYS PRO PRO ARG HIS TYR THR GLN PHE SEQRES 5 D 174 TRP ASN TYR LEU GLU ARG CYS ARG TYR CYS ASN VAL LEU SEQRES 6 D 174 CYS GLY GLU ARG GLU GLU GLU ALA ARG ALA CYS HIS ALA SEQRES 7 D 174 THR HIS ASN ARG ALA CYS ARG CYS ARG THR GLY PHE PHE SEQRES 8 D 174 ALA HIS ALA GLY PHE CYS LEU GLU HIS ALA SER CYS PRO SEQRES 9 D 174 PRO GLY ALA GLY VAL ILE ALA PRO GLY THR PRO SER GLN SEQRES 10 D 174 ASN THR GLN CYS GLN PRO CYS PRO PRO GLY THR PHE SER SEQRES 11 D 174 ALA SER SER SER SER SER GLU GLN CYS GLN PRO HIS ARG SEQRES 12 D 174 ASN CYS THR ALA LEU GLY LEU ALA LEU ASN VAL PRO GLY SEQRES 13 D 174 SER SER SER HIS ASP THR LEU CYS THR SER THR GLY HIS SEQRES 14 D 174 HIS HIS HIS HIS HIS SHEET 1 A 2 THR D 35 ARG D 39 0 SHEET 2 A 2 ARG D 46 ALA D 50 -1 O CYS D 49 N TYR D 36 SHEET 1 B 2 THR D 56 ARG D 60 0 SHEET 2 B 2 THR D 69 PRO D 72 -1 O THR D 69 N ARG D 60 SHEET 1 C 2 HIS D 77 TYR D 78 0 SHEET 2 C 2 ARG D 89 TYR D 90 -1 O ARG D 89 N TYR D 78 SHEET 1 D 2 GLU D 99 ARG D 103 0 SHEET 2 D 2 ALA D 112 CYS D 115 -1 O ARG D 114 N GLU D 100 SHEET 1 E 2 PHE D 119 ALA D 121 0 SHEET 2 E 2 CYS D 126 GLU D 128 -1 O LEU D 127 N PHE D 120 SSBOND 1 CYS D 49 CYS D 62 1555 1555 2.02 SSBOND 2 CYS D 52 CYS D 70 1555 1555 2.03 SSBOND 3 CYS D 73 CYS D 88 1555 1555 2.04 SSBOND 4 CYS D 91 CYS D 105 1555 1555 2.03 SSBOND 5 CYS D 95 CYS D 113 1555 1555 1.90 SSBOND 6 CYS D 115 CYS D 126 1555 1555 2.03 SSBOND 7 CYS D 132 CYS D 150 1555 1555 2.04 CRYST1 130.019 130.019 96.026 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007691 0.004441 0.000000 0.00000 SCALE2 0.000000 0.008881 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010414 0.00000