HEADER SIGNALING PROTEIN 09-APR-10 3MHY TITLE A NEW PII PROTEIN STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PII-LIKE PROTEIN PZ; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: PZ PROTEIN, NITROGEN REGULATOR PII-LIKE PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AZOSPIRILLUM BRASILENSE; SOURCE 3 ORGANISM_TAXID: 192; SOURCE 4 GENE: GLNZ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMSA4 KEYWDS PII PROTEIN, ALPHA-BETA PROTEIN, HOMOTRIMER, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.K.WINKLER,D.TRUAN,X.D.LI REVDAT 3 01-NOV-23 3MHY 1 REMARK LINK REVDAT 2 13-FEB-13 3MHY 1 JRNL SOURCE VERSN REVDAT 1 09-JUN-10 3MHY 0 JRNL AUTH D.TRUAN,L.F.HUERGO,L.S.CHUBATSU,M.MERRICK,X.D.LI,F.K.WINKLER JRNL TITL A NEW P(II) PROTEIN STRUCTURE IDENTIFIES THE 2-OXOGLUTARATE JRNL TITL 2 BINDING SITE. JRNL REF J.MOL.BIOL. V. 400 531 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20493877 JRNL DOI 10.1016/J.JMB.2010.05.036 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 65001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3251 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3MHY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058567. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : LN2 COOLED FIXED-EXIT SI(111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65001 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 47.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 18.3200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.28 REMARK 200 R MERGE FOR SHELL (I) : 0.32600 REMARK 200 R SYM FOR SHELL (I) : 0.50700 REMARK 200 FOR SHELL : 4.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2GNK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.5, 40% PEG 200, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K, PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.44000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.44000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.49000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.97500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.49000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.97500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.44000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.49000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.97500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.44000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.49000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.97500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 116 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 120 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 127 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 344 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 44 REMARK 465 ILE A 45 REMARK 465 TYR A 46 REMARK 465 ARG A 47 REMARK 465 GLY A 48 REMARK 465 ALA A 49 REMARK 465 GLU A 50 REMARK 465 TYR A 51 REMARK 465 SER A 52 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 40 CD CE NZ REMARK 470 GLN A 42 CG CD OE1 NE2 REMARK 470 THR A 43 OG1 CG2 REMARK 470 LYS A 79 CD CE NZ REMARK 470 ARG A 85 CD NE CZ NH1 NH2 REMARK 470 GLN A 98 CD OE1 NE2 REMARK 470 GLN B 26 CG CD OE1 NE2 REMARK 470 GLU B 32 CG CD OE1 OE2 REMARK 470 ARG B 47 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 51 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN B 72 CD OE1 NE2 REMARK 470 GLU B 75 CD OE1 OE2 REMARK 470 LYS B 79 CG CD CE NZ REMARK 470 GLN C 26 CG CD OE1 NE2 REMARK 470 GLU C 50 CG CD OE1 OE2 REMARK 470 LYS C 79 CD CE NZ REMARK 470 GLU C 110 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 108 -124.35 51.97 REMARK 500 ASN B 108 -121.98 52.37 REMARK 500 ASN C 108 -142.66 61.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG6 A 118 REMARK 610 PG6 B 118 REMARK 610 PG6 B 117 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 115 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 39 OE1 REMARK 620 2 ATP A 113 O2G 96.4 REMARK 620 3 ATP A 113 O1A 174.5 89.0 REMARK 620 4 ATP A 113 O1B 94.8 88.2 86.3 REMARK 620 5 AKG A 114 O2 83.4 178.1 91.1 93.7 REMARK 620 6 AKG A 114 O5 89.8 99.3 88.4 170.7 78.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 116 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 117 O REMARK 620 2 HOH A 119 O 171.0 REMARK 620 3 HOH A 120 O 86.0 85.1 REMARK 620 4 HOH C 116 O 86.9 98.1 121.2 REMARK 620 5 HOH C 117 O 97.3 87.0 121.2 117.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 115 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 39 OE1 REMARK 620 2 ATP B 113 O2G 94.6 REMARK 620 3 ATP B 113 O2B 94.8 88.0 REMARK 620 4 ATP B 113 O2A 172.6 92.8 85.3 REMARK 620 5 AKG B 114 O2 81.9 176.4 93.2 90.7 REMARK 620 6 AKG B 114 O5 87.6 101.1 170.4 91.1 77.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 115 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN C 39 OE1 REMARK 620 2 ATP C 113 O1G 93.8 REMARK 620 3 ATP C 113 O1B 95.4 88.3 REMARK 620 4 ATP C 113 O1A 174.8 91.4 85.3 REMARK 620 5 AKG C 114 O2 83.6 176.8 93.8 91.2 REMARK 620 6 AKG C 114 O5 88.5 99.1 171.4 90.2 78.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG6 A 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG A 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG B 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 116 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG6 B 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG6 B 117 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP C 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG C 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 115 DBREF 3MHY A 1 112 UNP P70731 P70731_AZOBR 1 112 DBREF 3MHY B 1 112 UNP P70731 P70731_AZOBR 1 112 DBREF 3MHY C 1 112 UNP P70731 P70731_AZOBR 1 112 SEQRES 1 A 112 MET LYS LEU VAL MET ALA ILE ILE LYS PRO PHE LYS LEU SEQRES 2 A 112 ASP GLU VAL ARG GLU ALA LEU THR SER LEU GLY ILE GLN SEQRES 3 A 112 GLY LEU THR VAL SER GLU VAL LYS GLY PHE GLY ARG GLN SEQRES 4 A 112 LYS GLY GLN THR GLU ILE TYR ARG GLY ALA GLU TYR SER SEQRES 5 A 112 VAL SER PHE LEU PRO LYS VAL LYS VAL GLU VAL ALA VAL SEQRES 6 A 112 SER ASP ASP GLN TYR GLU GLN VAL VAL GLU ALA ILE GLN SEQRES 7 A 112 LYS ALA ALA ASN THR GLY ARG ILE GLY ASP GLY LYS ILE SEQRES 8 A 112 PHE VAL LEU ASP ILE ALA GLN ALA VAL ARG ILE ARG THR SEQRES 9 A 112 GLY GLU THR ASN THR GLU ALA LEU SEQRES 1 B 112 MET LYS LEU VAL MET ALA ILE ILE LYS PRO PHE LYS LEU SEQRES 2 B 112 ASP GLU VAL ARG GLU ALA LEU THR SER LEU GLY ILE GLN SEQRES 3 B 112 GLY LEU THR VAL SER GLU VAL LYS GLY PHE GLY ARG GLN SEQRES 4 B 112 LYS GLY GLN THR GLU ILE TYR ARG GLY ALA GLU TYR SER SEQRES 5 B 112 VAL SER PHE LEU PRO LYS VAL LYS VAL GLU VAL ALA VAL SEQRES 6 B 112 SER ASP ASP GLN TYR GLU GLN VAL VAL GLU ALA ILE GLN SEQRES 7 B 112 LYS ALA ALA ASN THR GLY ARG ILE GLY ASP GLY LYS ILE SEQRES 8 B 112 PHE VAL LEU ASP ILE ALA GLN ALA VAL ARG ILE ARG THR SEQRES 9 B 112 GLY GLU THR ASN THR GLU ALA LEU SEQRES 1 C 112 MET LYS LEU VAL MET ALA ILE ILE LYS PRO PHE LYS LEU SEQRES 2 C 112 ASP GLU VAL ARG GLU ALA LEU THR SER LEU GLY ILE GLN SEQRES 3 C 112 GLY LEU THR VAL SER GLU VAL LYS GLY PHE GLY ARG GLN SEQRES 4 C 112 LYS GLY GLN THR GLU ILE TYR ARG GLY ALA GLU TYR SER SEQRES 5 C 112 VAL SER PHE LEU PRO LYS VAL LYS VAL GLU VAL ALA VAL SEQRES 6 C 112 SER ASP ASP GLN TYR GLU GLN VAL VAL GLU ALA ILE GLN SEQRES 7 C 112 LYS ALA ALA ASN THR GLY ARG ILE GLY ASP GLY LYS ILE SEQRES 8 C 112 PHE VAL LEU ASP ILE ALA GLN ALA VAL ARG ILE ARG THR SEQRES 9 C 112 GLY GLU THR ASN THR GLU ALA LEU HET PG6 A 118 14 HET ATP A 113 31 HET AKG A 114 10 HET MG A 115 1 HET MG A 116 1 HET ATP B 113 31 HET AKG B 114 10 HET MG B 115 1 HET MES B 116 12 HET PG6 B 118 13 HET PG6 B 117 12 HET ATP C 113 31 HET AKG C 114 10 HET MG C 115 1 HETNAM PG6 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]- HETNAM 2 PG6 ETHOXY}-ETHANE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM AKG 2-OXOGLUTARIC ACID HETNAM MG MAGNESIUM ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 4 PG6 3(C12 H26 O6) FORMUL 5 ATP 3(C10 H16 N5 O13 P3) FORMUL 6 AKG 3(C5 H6 O5) FORMUL 7 MG 4(MG 2+) FORMUL 12 MES C6 H13 N O4 S FORMUL 18 HOH *326(H2 O) HELIX 1 1 LYS A 9 PHE A 11 5 3 HELIX 2 2 LYS A 12 GLY A 24 1 13 HELIX 3 3 GLN A 69 ASN A 82 1 14 HELIX 4 4 THR A 107 ALA A 111 5 5 HELIX 5 5 LYS B 9 PHE B 11 5 3 HELIX 6 6 LYS B 12 GLY B 24 1 13 HELIX 7 7 GLY B 48 SER B 52 5 5 HELIX 8 8 GLN B 69 ASN B 82 1 14 HELIX 9 9 THR B 107 ALA B 111 5 5 HELIX 10 10 LYS C 9 PHE C 11 5 3 HELIX 11 11 LYS C 12 GLY C 24 1 13 HELIX 12 12 GLY C 48 SER C 52 5 5 HELIX 13 13 GLN C 69 ASN C 82 1 14 HELIX 14 14 THR C 107 LEU C 112 5 6 SHEET 1 A10 GLN C 98 ARG C 101 0 SHEET 2 A10 LYS A 90 ASP A 95 -1 N VAL A 93 O GLN C 98 SHEET 3 A10 LYS A 2 ILE A 8 -1 N MET A 5 O PHE A 92 SHEET 4 A10 LEU A 56 VAL A 65 -1 O VAL A 61 N ALA A 6 SHEET 5 A10 LEU A 28 PHE A 36 -1 N THR A 29 O GLU A 62 SHEET 6 A10 LEU C 28 PHE C 36 -1 O VAL C 30 N LYS A 34 SHEET 7 A10 LEU C 56 VAL C 65 -1 O GLU C 62 N THR C 29 SHEET 8 A10 LYS C 2 ILE C 8 -1 N ALA C 6 O VAL C 61 SHEET 9 A10 LYS C 90 ASP C 95 -1 O LEU C 94 N LEU C 3 SHEET 10 A10 GLN B 98 ARG B 101 -1 N GLN B 98 O VAL C 93 SHEET 1 B10 GLN C 98 ARG C 101 0 SHEET 2 B10 LYS A 90 ASP A 95 -1 N VAL A 93 O GLN C 98 SHEET 3 B10 LYS A 2 ILE A 8 -1 N MET A 5 O PHE A 92 SHEET 4 B10 LEU A 56 VAL A 65 -1 O VAL A 61 N ALA A 6 SHEET 5 B10 LEU A 28 PHE A 36 -1 N THR A 29 O GLU A 62 SHEET 6 B10 LEU B 28 PHE B 36 -1 O LYS B 34 N VAL A 30 SHEET 7 B10 LEU B 56 VAL B 65 -1 O GLU B 62 N THR B 29 SHEET 8 B10 LYS B 2 ILE B 8 -1 N VAL B 4 O VAL B 63 SHEET 9 B10 LYS B 90 ASP B 95 -1 O PHE B 92 N MET B 5 SHEET 10 B10 GLN A 98 ARG A 101 -1 N GLN A 98 O VAL B 93 SHEET 1 C10 GLN A 98 ARG A 101 0 SHEET 2 C10 LYS B 90 ASP B 95 -1 O VAL B 93 N GLN A 98 SHEET 3 C10 LYS B 2 ILE B 8 -1 N MET B 5 O PHE B 92 SHEET 4 C10 LEU B 56 VAL B 65 -1 O VAL B 63 N VAL B 4 SHEET 5 C10 LEU B 28 PHE B 36 -1 N THR B 29 O GLU B 62 SHEET 6 C10 LEU C 28 PHE C 36 -1 O LYS C 34 N VAL B 30 SHEET 7 C10 LEU C 56 VAL C 65 -1 O GLU C 62 N THR C 29 SHEET 8 C10 LYS C 2 ILE C 8 -1 N ALA C 6 O VAL C 61 SHEET 9 C10 LYS C 90 ASP C 95 -1 O LEU C 94 N LEU C 3 SHEET 10 C10 GLN B 98 ARG B 101 -1 N GLN B 98 O VAL C 93 LINK OE1 GLN A 39 MG MG A 115 1555 1555 2.03 LINK O2G ATP A 113 MG MG A 115 1555 1555 2.03 LINK O1A ATP A 113 MG MG A 115 1555 1555 2.07 LINK O1B ATP A 113 MG MG A 115 1555 1555 2.08 LINK O2 AKG A 114 MG MG A 115 1555 1555 2.06 LINK O5 AKG A 114 MG MG A 115 1555 1555 2.15 LINK MG MG A 116 O HOH A 117 1555 1555 2.14 LINK MG MG A 116 O HOH A 119 1555 1555 2.14 LINK MG MG A 116 O HOH A 120 1555 1555 2.12 LINK MG MG A 116 O HOH C 116 1555 1555 2.16 LINK MG MG A 116 O HOH C 117 1555 1555 2.16 LINK OE1 GLN B 39 MG MG B 115 1555 1555 2.08 LINK O2G ATP B 113 MG MG B 115 1555 1555 2.02 LINK O2B ATP B 113 MG MG B 115 1555 1555 2.04 LINK O2A ATP B 113 MG MG B 115 1555 1555 2.08 LINK O2 AKG B 114 MG MG B 115 1555 1555 2.03 LINK O5 AKG B 114 MG MG B 115 1555 1555 2.17 LINK OE1 GLN C 39 MG MG C 115 1555 1555 2.04 LINK O1G ATP C 113 MG MG C 115 1555 1555 2.02 LINK O1B ATP C 113 MG MG C 115 1555 1555 2.06 LINK O1A ATP C 113 MG MG C 115 1555 1555 2.08 LINK O2 AKG C 114 MG MG C 115 1555 1555 2.04 LINK O5 AKG C 114 MG MG C 115 1555 1555 2.14 SITE 1 AC1 7 VAL A 33 LYS A 34 HOH A 130 HOH A 158 SITE 2 AC1 7 SER C 31 GLU C 32 HOH C 177 SITE 1 AC2 25 ILE A 7 GLY A 35 PHE A 36 GLY A 37 SITE 2 AC2 25 ARG A 38 GLN A 39 LYS A 58 ILE A 86 SITE 3 AC2 25 GLY A 87 ASP A 88 GLY A 89 LYS A 90 SITE 4 AC2 25 AKG A 114 MG A 115 HOH A 123 HOH A 134 SITE 5 AC2 25 GLY C 27 LEU C 28 THR C 29 GLU C 62 SITE 6 AC2 25 ALA C 64 ARG C 101 ARG C 103 LEU C 112 SITE 7 AC2 25 HOH C 203 SITE 1 AC3 12 GLY A 37 ARG A 38 GLN A 39 LYS A 40 SITE 2 AC3 12 GLY A 41 LEU A 56 LYS A 58 GLY A 87 SITE 3 AC3 12 ATP A 113 MG A 115 HOH A 134 HOH A 161 SITE 1 AC4 3 GLN A 39 ATP A 113 AKG A 114 SITE 1 AC5 5 HOH A 117 HOH A 119 HOH A 120 HOH C 116 SITE 2 AC5 5 HOH C 117 SITE 1 AC6 24 GLY A 27 LEU A 28 THR A 29 GLU A 62 SITE 2 AC6 24 ALA A 64 ARG A 101 ARG A 103 LEU A 112 SITE 3 AC6 24 ILE B 7 GLY B 35 PHE B 36 GLY B 37 SITE 4 AC6 24 ARG B 38 GLN B 39 LYS B 58 ILE B 86 SITE 5 AC6 24 GLY B 87 ASP B 88 GLY B 89 LYS B 90 SITE 6 AC6 24 AKG B 114 MG B 115 HOH B 130 HOH B 133 SITE 1 AC7 14 GLY B 37 ARG B 38 GLN B 39 LYS B 40 SITE 2 AC7 14 GLY B 41 LEU B 56 LYS B 58 ILE B 86 SITE 3 AC7 14 GLY B 87 ATP B 113 MG B 115 HOH B 130 SITE 4 AC7 14 HOH B 155 HOH B 187 SITE 1 AC8 3 GLN B 39 ATP B 113 AKG B 114 SITE 1 AC9 12 GLU B 50 SER B 66 ASP B 67 ASP B 68 SITE 2 AC9 12 THR B 109 HOH B 135 HOH B 192 SER C 66 SITE 3 AC9 12 ASP C 67 ASP C 68 GLN C 69 THR C 109 SITE 1 BC1 8 LEU A 13 VAL A 30 GLU A 32 LYS B 34 SITE 2 BC1 8 PHE B 55 HOH B 167 HOH B 188 HOH B 246 SITE 1 BC2 5 LEU B 13 VAL B 30 LYS C 34 HOH C 142 SITE 2 BC2 5 HOH C 350 SITE 1 BC3 26 GLY B 27 LEU B 28 THR B 29 GLU B 62 SITE 2 BC3 26 ALA B 64 ARG B 101 ARG B 103 LEU B 112 SITE 3 BC3 26 HOH B 122 HOH B 286 ILE C 7 GLY C 35 SITE 4 BC3 26 PHE C 36 GLY C 37 ARG C 38 GLN C 39 SITE 5 BC3 26 LYS C 58 ILE C 86 GLY C 87 ASP C 88 SITE 6 BC3 26 GLY C 89 LYS C 90 AKG C 114 MG C 115 SITE 7 BC3 26 HOH C 124 HOH C 129 SITE 1 BC4 16 LYS C 9 PHE C 36 GLY C 37 ARG C 38 SITE 2 BC4 16 GLN C 39 LYS C 40 GLY C 41 LEU C 56 SITE 3 BC4 16 LYS C 58 ILE C 86 GLY C 87 ATP C 113 SITE 4 BC4 16 MG C 115 HOH C 129 HOH C 152 HOH C 277 SITE 1 BC5 3 GLN C 39 ATP C 113 AKG C 114 CRYST1 64.980 87.950 116.880 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015389 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011370 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008556 0.00000