data_3MIJ
# 
_entry.id   3MIJ 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.379 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   3MIJ         pdb_00003mij 10.2210/pdb3mij/pdb 
NDB   NA0512       ?            ?                   
RCSB  RCSB058588   ?            ?                   
WWPDB D_1000058588 ?            ?                   
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        3MIJ 
_pdbx_database_status.recvd_initial_deposition_date   2010-04-10 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Collie, G.W.'    1 
'Neidle, S.'      2 
'Parkinson, G.N.' 3 
# 
_citation.id                        primary 
_citation.title                     'Structural basis of telomeric RNA quadruplex-acridine ligand recognition.' 
_citation.journal_abbrev            J.Am.Chem.Soc. 
_citation.journal_volume            133 
_citation.page_first                2721 
_citation.page_last                 2728 
_citation.year                      2011 
_citation.journal_id_ASTM           JACSAT 
_citation.country                   US 
_citation.journal_id_ISSN           0002-7863 
_citation.journal_id_CSD            0004 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   21291211 
_citation.pdbx_database_id_DOI      10.1021/ja109767y 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Collie, G.W.'    1 ? 
primary 'Sparapani, S.'   2 ? 
primary 'Parkinson, G.N.' 3 ? 
primary 'Neidle, S.'      4 ? 
# 
_cell.entry_id           3MIJ 
_cell.length_a           56.606 
_cell.length_b           56.606 
_cell.length_c           56.606 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              12 
_cell.pdbx_unique_axis   ? 
_cell.length_a_esd       ? 
_cell.length_b_esd       ? 
_cell.length_c_esd       ? 
_cell.angle_alpha_esd    ? 
_cell.angle_beta_esd     ? 
_cell.angle_gamma_esd    ? 
# 
_symmetry.entry_id                         3MIJ 
_symmetry.space_group_name_H-M             'P 2 3' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                195 
_symmetry.space_group_name_Hall            ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn 
;RNA (5'-R(*UP*AP*GP*GP*GP*UP*UP*AP*GP*GP*GP*U)-3')
;
3909.352 1  ? ? ? 'Human telomeric RNA sequence' 
2 non-polymer syn 'POTASSIUM ION'                                                                                           39.098 
2  ? ? ? ?                              
3 non-polymer syn "N,N'-[acridine-3,6-diylbis(1H-1,2,3-triazole-1,4-diylbenzene-3,1-diyl)]bis[3-(diethylamino)propanamide]" 
749.906  1  ? ? ? ?                              
4 water       nat water                                                                                                     18.015 
16 ? ? ? ?                              
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       UAGGGUUAGGGU 
_entity_poly.pdbx_seq_one_letter_code_can   UAGGGUUAGGGU 
_entity_poly.pdbx_strand_id                 A 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  U n 
1 2  A n 
1 3  G n 
1 4  G n 
1 5  G n 
1 6  U n 
1 7  U n 
1 8  A n 
1 9  G n 
1 10 G n 
1 11 G n 
1 12 U n 
# 
_pdbx_entity_src_syn.entity_id              1 
_pdbx_entity_src_syn.pdbx_src_id            1 
_pdbx_entity_src_syn.pdbx_alt_source_flag   sample 
_pdbx_entity_src_syn.pdbx_beg_seq_num       ? 
_pdbx_entity_src_syn.pdbx_end_seq_num       ? 
_pdbx_entity_src_syn.organism_scientific    'Homo sapiens' 
_pdbx_entity_src_syn.organism_common_name   human 
_pdbx_entity_src_syn.ncbi_taxonomy_id       9606 
_pdbx_entity_src_syn.details                'This sequence occurs naturally in humans.' 
# 
_struct_ref.id                         1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    3MIJ 
_struct_ref.pdbx_db_accession          3MIJ 
_struct_ref.entity_id                  1 
_struct_ref.pdbx_align_begin           ? 
_struct_ref.pdbx_seq_one_letter_code   UAGGGUUAGGGU 
_struct_ref.pdbx_db_isoform            ? 
# 
_struct_ref_seq.align_id                      1 
_struct_ref_seq.ref_id                        1 
_struct_ref_seq.pdbx_PDB_id_code              3MIJ 
_struct_ref_seq.pdbx_strand_id                A 
_struct_ref_seq.seq_align_beg                 1 
_struct_ref_seq.pdbx_seq_align_beg_ins_code   ? 
_struct_ref_seq.seq_align_end                 12 
_struct_ref_seq.pdbx_seq_align_end_ins_code   ? 
_struct_ref_seq.pdbx_db_accession             3MIJ 
_struct_ref_seq.db_align_beg                  1 
_struct_ref_seq.pdbx_db_align_beg_ins_code    ? 
_struct_ref_seq.db_align_end                  12 
_struct_ref_seq.pdbx_db_align_end_ins_code    ? 
_struct_ref_seq.pdbx_auth_seq_align_beg       1 
_struct_ref_seq.pdbx_auth_seq_align_end       12 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
A   'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE"                                                                              ? 
'C10 H14 N5 O7 P' 347.221 
G   'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE"                                                                              ? 
'C10 H14 N5 O8 P' 363.221 
HOH non-polymer   . WATER                                                                                                     ? 
'H2 O'            18.015  
K   non-polymer   . 'POTASSIUM ION'                                                                                           ? 
'K 1'             39.098  
R14 non-polymer   . "N,N'-[acridine-3,6-diylbis(1H-1,2,3-triazole-1,4-diylbenzene-3,1-diyl)]bis[3-(diethylamino)propanamide]" 
'triazole-acridine conjugate' 'C43 H47 N11 O2'  749.906 
U   'RNA linking' y "URIDINE-5'-MONOPHOSPHATE"                                                                                ? 
'C9 H13 N2 O9 P'  324.181 
# 
_exptl.entry_id          3MIJ 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      3.87 
_exptl_crystal.density_percent_sol   68.19 
_exptl_crystal.description           ? 
_exptl_crystal.F_000                 ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, HANGING DROP' 
_exptl_crystal_grow.temp            285 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              6.5 
_exptl_crystal_grow.pdbx_details    
;MPD, sodium chloride, potassium chloride, sodium cacodylate, potassium cacodylate, spermine, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 285K
;
_exptl_crystal_grow.pdbx_pH_range   ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           100 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               CCD 
_diffrn_detector.type                   'ADSC QUANTUM 315' 
_diffrn_detector.pdbx_collection_date   2010-02-01 
_diffrn_detector.details                Monochromator 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   0.97630 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      SYNCHROTRON 
_diffrn_source.type                        'DIAMOND BEAMLINE I04' 
_diffrn_source.pdbx_synchrotron_site       Diamond 
_diffrn_source.pdbx_synchrotron_beamline   I04 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_wavelength_list        0.97630 
# 
_reflns.entry_id                     3MIJ 
_reflns.observed_criterion_sigma_I   2.0 
_reflns.observed_criterion_sigma_F   2.0 
_reflns.d_resolution_low             17.90 
_reflns.d_resolution_high            2.40 
_reflns.number_obs                   2511 
_reflns.number_all                   2511 
_reflns.percent_possible_obs         100 
_reflns.pdbx_Rmerge_I_obs            0.055 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        16.1 
_reflns.B_iso_Wilson_estimate        26.462 
_reflns.pdbx_redundancy              6.6 
_reflns.R_free_details               ? 
_reflns.limit_h_max                  ? 
_reflns.limit_h_min                  ? 
_reflns.limit_k_max                  ? 
_reflns.limit_k_min                  ? 
_reflns.limit_l_max                  ? 
_reflns.limit_l_min                  ? 
_reflns.observed_criterion_F_max     ? 
_reflns.observed_criterion_F_min     ? 
_reflns.pdbx_chi_squared             ? 
_reflns.pdbx_scaling_rejects         ? 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
# 
_reflns_shell.d_res_high             2.40 
_reflns_shell.d_res_low              2.49 
_reflns_shell.percent_possible_all   100 
_reflns_shell.Rmerge_I_obs           0.368 
_reflns_shell.pdbx_Rsym_value        ? 
_reflns_shell.meanI_over_sigI_obs    4.3 
_reflns_shell.pdbx_redundancy        6.78 
_reflns_shell.percent_possible_obs   ? 
_reflns_shell.number_unique_all      ? 
_reflns_shell.number_measured_all    ? 
_reflns_shell.number_measured_obs    ? 
_reflns_shell.number_unique_obs      ? 
_reflns_shell.pdbx_chi_squared       ? 
_reflns_shell.pdbx_diffrn_id         ? 
_reflns_shell.pdbx_ordinal           1 
# 
_refine.entry_id                                 3MIJ 
_refine.ls_number_reflns_obs                     1901 
_refine.ls_number_reflns_all                     ? 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          ? 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             16.34 
_refine.ls_d_res_high                            2.60 
_refine.ls_percent_reflns_obs                    99.95 
_refine.ls_R_factor_obs                          0.23603 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       0.23543 
_refine.ls_R_factor_R_free                       0.24752 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 4.6 
_refine.ls_number_reflns_R_free                  91 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.correlation_coeff_Fo_to_Fc               0.942 
_refine.correlation_coeff_Fo_to_Fc_free          0.956 
_refine.B_iso_mean                               26.462 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.solvent_model_details                    MASK 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_solvent_vdw_probe_radii             1.40 
_refine.pdbx_solvent_ion_probe_radii             0.80 
_refine.pdbx_solvent_shrinkage_radii             0.80 
_refine.pdbx_ls_cross_valid_method               THROUGHOUT 
_refine.details                                  'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' 
_refine.pdbx_starting_model                      'PDB ID 3IBK' 
_refine.pdbx_method_to_determine_struct          'MOLECULAR REPLACEMENT' 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       'MAXIMUM LIKELIHOOD' 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            RANDOM 
_refine.pdbx_overall_ESU_R                       0.476 
_refine.pdbx_overall_ESU_R_Free                  0.274 
_refine.overall_SU_ML                            0.227 
_refine.overall_SU_B                             21.757 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.B_iso_min                                ? 
_refine.B_iso_max                                ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.overall_SU_R_free                        ? 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   259 
_refine_hist.pdbx_number_atoms_ligand         58 
_refine_hist.number_atoms_solvent             16 
_refine_hist.number_atoms_total               333 
_refine_hist.d_res_high                       2.60 
_refine_hist.d_res_low                        16.34 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
r_bond_refined_d     0.010 0.021 ? 352 'X-RAY DIFFRACTION' ? 
r_angle_refined_deg  1.018 2.994 ? 538 'X-RAY DIFFRACTION' ? 
r_chiral_restr       0.052 0.200 ? 59  'X-RAY DIFFRACTION' ? 
r_gen_planes_refined 0.008 0.021 ? 186 'X-RAY DIFFRACTION' ? 
r_scbond_it          1.244 3.000 ? 352 'X-RAY DIFFRACTION' ? 
r_scangle_it         2.138 4.500 ? 538 'X-RAY DIFFRACTION' ? 
# 
_refine_ls_shell.pdbx_total_number_of_bins_used   20 
_refine_ls_shell.d_res_high                       2.600 
_refine_ls_shell.d_res_low                        2.666 
_refine_ls_shell.number_reflns_R_work             142 
_refine_ls_shell.R_factor_R_work                  0.497 
_refine_ls_shell.percent_reflns_obs               100.00 
_refine_ls_shell.R_factor_R_free                  0.456 
_refine_ls_shell.R_factor_R_free_error            ? 
_refine_ls_shell.percent_reflns_R_free            ? 
_refine_ls_shell.number_reflns_R_free             2 
_refine_ls_shell.number_reflns_all                ? 
_refine_ls_shell.R_factor_all                     ? 
_refine_ls_shell.number_reflns_obs                142 
_refine_ls_shell.redundancy_reflns_obs            ? 
_refine_ls_shell.pdbx_refine_id                   'X-RAY DIFFRACTION' 
# 
_struct.entry_id                  3MIJ 
_struct.title                     'Crystal structure of a telomeric RNA G-quadruplex complexed with an acridine-based ligand.' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        3MIJ 
_struct_keywords.pdbx_keywords   RNA 
_struct_keywords.text            'Quadruplex, RNA-ligand complex, RNA, telomeric' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
C N N 2 ? 
D N N 3 ? 
E N N 4 ? 
# 
_struct_biol.id        1 
_struct_biol.details   ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
metalc1 metalc ? ? A G 3  O6 ? ? ? 1_555 C K .  K  ? ? A G 3  A K 22 1_555 ? ? ? ? ? ? ?           2.623 ? ? 
metalc2 metalc ? ? A G 4  O6 ? ? ? 1_555 B K .  K  ? ? A G 4  A K 21 1_555 ? ? ? ? ? ? ?           2.775 ? ? 
metalc3 metalc ? ? A G 4  O6 ? ? ? 1_555 C K .  K  ? ? A G 4  A K 22 1_555 ? ? ? ? ? ? ?           3.334 ? ? 
metalc4 metalc ? ? A G 5  O6 ? ? ? 1_555 B K .  K  ? ? A G 5  A K 21 1_555 ? ? ? ? ? ? ?           2.701 ? ? 
metalc5 metalc ? ? A G 9  O6 ? ? ? 1_555 C K .  K  ? ? A G 9  A K 22 1_555 ? ? ? ? ? ? ?           2.635 ? ? 
metalc6 metalc ? ? A G 10 O6 ? ? ? 1_555 B K .  K  ? ? A G 10 A K 21 1_555 ? ? ? ? ? ? ?           2.727 ? ? 
metalc7 metalc ? ? A G 10 O6 ? ? ? 1_555 C K .  K  ? ? A G 10 A K 22 1_555 ? ? ? ? ? ? ?           2.982 ? ? 
metalc8 metalc ? ? A G 11 O6 ? ? ? 1_555 B K .  K  ? ? A G 11 A K 21 1_555 ? ? ? ? ? ? ?           2.813 ? ? 
hydrog1 hydrog ? ? A G 3  N1 ? ? ? 1_555 A G 9  O6 ? ? A G 3  A G 9  1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog2 hydrog ? ? A G 3  N2 ? ? ? 1_555 A G 9  N7 ? ? A G 3  A G 9  1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog3 hydrog ? ? A G 4  N1 ? ? ? 1_555 A G 10 O6 ? ? A G 4  A G 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog4 hydrog ? ? A G 4  N2 ? ? ? 1_555 A G 10 N7 ? ? A G 4  A G 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog5 hydrog ? ? A G 5  N1 ? ? ? 1_555 A G 11 O6 ? ? A G 5  A G 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog6 hydrog ? ? A G 5  N2 ? ? ? 1_555 A G 11 N7 ? ? A G 5  A G 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
metalc ? ? 
hydrog ? ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software A K   21 ? 10 'BINDING SITE FOR RESIDUE K A 21'   
AC2 Software A K   22 ? 10 'BINDING SITE FOR RESIDUE K A 22'   
AC3 Software A R14 30 ? 12 'BINDING SITE FOR RESIDUE R14 A 30' 
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 10 G   A 4  ? G   A 4  . ? 4_545  ? 
2  AC1 10 G   A 4  ? G   A 4  . ? 1_555  ? 
3  AC1 10 G   A 5  ? G   A 5  . ? 4_545  ? 
4  AC1 10 G   A 5  ? G   A 5  . ? 1_555  ? 
5  AC1 10 G   A 10 ? G   A 10 . ? 1_555  ? 
6  AC1 10 G   A 10 ? G   A 10 . ? 4_545  ? 
7  AC1 10 G   A 11 ? G   A 11 . ? 4_545  ? 
8  AC1 10 G   A 11 ? G   A 11 . ? 1_555  ? 
9  AC1 10 K   C .  ? K   A 22 . ? 4_545  ? 
10 AC1 10 K   C .  ? K   A 22 . ? 1_555  ? 
11 AC2 10 G   A 3  ? G   A 3  . ? 4_545  ? 
12 AC2 10 G   A 3  ? G   A 3  . ? 1_555  ? 
13 AC2 10 G   A 4  ? G   A 4  . ? 1_555  ? 
14 AC2 10 G   A 4  ? G   A 4  . ? 4_545  ? 
15 AC2 10 G   A 9  ? G   A 9  . ? 4_545  ? 
16 AC2 10 G   A 9  ? G   A 9  . ? 1_555  ? 
17 AC2 10 G   A 10 ? G   A 10 . ? 1_555  ? 
18 AC2 10 G   A 10 ? G   A 10 . ? 4_545  ? 
19 AC2 10 K   B .  ? K   A 21 . ? 4_545  ? 
20 AC2 10 K   B .  ? K   A 21 . ? 1_555  ? 
21 AC3 12 U   A 1  ? U   A 1  . ? 1_555  ? 
22 AC3 12 U   A 1  ? U   A 1  . ? 3_655  ? 
23 AC3 12 A   A 2  ? A   A 2  . ? 1_555  ? 
24 AC3 12 G   A 3  ? G   A 3  . ? 1_555  ? 
25 AC3 12 U   A 6  ? U   A 6  . ? 10_555 ? 
26 AC3 12 A   A 8  ? A   A 8  . ? 1_555  ? 
27 AC3 12 G   A 9  ? G   A 9  . ? 4_545  ? 
28 AC3 12 G   A 10 ? G   A 10 . ? 10_555 ? 
29 AC3 12 HOH E .  ? HOH A 45 . ? 1_555  ? 
30 AC3 12 HOH E .  ? HOH A 48 . ? 1_555  ? 
31 AC3 12 HOH E .  ? HOH A 54 . ? 1_555  ? 
32 AC3 12 HOH E .  ? HOH A 56 . ? 3_655  ? 
# 
_database_PDB_matrix.entry_id          3MIJ 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_atom_sites.entry_id                    3MIJ 
_atom_sites.fract_transf_matrix[1][1]   0.017666 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.017666 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.017666 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C 
K 
N 
O 
P 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  U 1  1  1  U U A . n 
A 1 2  A 2  2  2  A A A . n 
A 1 3  G 3  3  3  G G A . n 
A 1 4  G 4  4  4  G G A . n 
A 1 5  G 5  5  5  G G A . n 
A 1 6  U 6  6  6  U U A . n 
A 1 7  U 7  7  7  U U A . n 
A 1 8  A 8  8  8  A A A . n 
A 1 9  G 9  9  9  G G A . n 
A 1 10 G 10 10 10 G G A . n 
A 1 11 G 11 11 11 G G A . n 
A 1 12 U 12 12 12 U U A . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
B 2 K   1  21 21 K   K   A . 
C 2 K   1  22 22 K   K   A . 
D 3 R14 1  30 30 R14 R14 A . 
E 4 HOH 1  41 41 HOH HOH A . 
E 4 HOH 2  42 42 HOH HOH A . 
E 4 HOH 3  43 43 HOH HOH A . 
E 4 HOH 4  44 44 HOH HOH A . 
E 4 HOH 5  45 45 HOH HOH A . 
E 4 HOH 6  46 46 HOH HOH A . 
E 4 HOH 7  47 47 HOH HOH A . 
E 4 HOH 8  48 48 HOH HOH A . 
E 4 HOH 9  49 49 HOH HOH A . 
E 4 HOH 10 50 50 HOH HOH A . 
E 4 HOH 11 51 51 HOH HOH A . 
E 4 HOH 12 52 52 HOH HOH A . 
E 4 HOH 13 53 53 HOH HOH A . 
E 4 HOH 14 54 54 HOH HOH A . 
E 4 HOH 15 55 55 HOH HOH A . 
E 4 HOH 16 56 56 HOH HOH A . 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_and_software_defined_assembly 
_pdbx_struct_assembly.method_details       PISA 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1,2 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E 
# 
loop_
_pdbx_struct_assembly_prop.biol_id 
_pdbx_struct_assembly_prop.type 
_pdbx_struct_assembly_prop.value 
_pdbx_struct_assembly_prop.details 
1 'ABSA (A^2)' 2230 ? 
1 MORE         -17  ? 
1 'SSA (A^2)'  4880 ? 
# 
loop_
_pdbx_struct_oper_list.id 
_pdbx_struct_oper_list.type 
_pdbx_struct_oper_list.name 
_pdbx_struct_oper_list.symmetry_operation 
_pdbx_struct_oper_list.matrix[1][1] 
_pdbx_struct_oper_list.matrix[1][2] 
_pdbx_struct_oper_list.matrix[1][3] 
_pdbx_struct_oper_list.vector[1] 
_pdbx_struct_oper_list.matrix[2][1] 
_pdbx_struct_oper_list.matrix[2][2] 
_pdbx_struct_oper_list.matrix[2][3] 
_pdbx_struct_oper_list.vector[2] 
_pdbx_struct_oper_list.matrix[3][1] 
_pdbx_struct_oper_list.matrix[3][2] 
_pdbx_struct_oper_list.matrix[3][3] 
_pdbx_struct_oper_list.vector[3] 
1 'identity operation'         1_555 x,y,z     1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000  
0.0000000000 0.0000000000   0.0000000000 0.0000000000 1.0000000000  0.0000000000 
2 'crystal symmetry operation' 4_545 x,-y-1,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 
0.0000000000 -56.6060000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 
# 
loop_
_pdbx_struct_special_symmetry.id 
_pdbx_struct_special_symmetry.PDB_model_num 
_pdbx_struct_special_symmetry.auth_asym_id 
_pdbx_struct_special_symmetry.auth_comp_id 
_pdbx_struct_special_symmetry.auth_seq_id 
_pdbx_struct_special_symmetry.PDB_ins_code 
_pdbx_struct_special_symmetry.label_asym_id 
_pdbx_struct_special_symmetry.label_comp_id 
_pdbx_struct_special_symmetry.label_seq_id 
1 1 A K 21 ? B K . 
2 1 A K 22 ? C K . 
# 
loop_
_pdbx_struct_conn_angle.id 
_pdbx_struct_conn_angle.ptnr1_label_atom_id 
_pdbx_struct_conn_angle.ptnr1_label_alt_id 
_pdbx_struct_conn_angle.ptnr1_label_asym_id 
_pdbx_struct_conn_angle.ptnr1_label_comp_id 
_pdbx_struct_conn_angle.ptnr1_label_seq_id 
_pdbx_struct_conn_angle.ptnr1_auth_atom_id 
_pdbx_struct_conn_angle.ptnr1_auth_asym_id 
_pdbx_struct_conn_angle.ptnr1_auth_comp_id 
_pdbx_struct_conn_angle.ptnr1_auth_seq_id 
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr1_symmetry 
_pdbx_struct_conn_angle.ptnr2_label_atom_id 
_pdbx_struct_conn_angle.ptnr2_label_alt_id 
_pdbx_struct_conn_angle.ptnr2_label_asym_id 
_pdbx_struct_conn_angle.ptnr2_label_comp_id 
_pdbx_struct_conn_angle.ptnr2_label_seq_id 
_pdbx_struct_conn_angle.ptnr2_auth_atom_id 
_pdbx_struct_conn_angle.ptnr2_auth_asym_id 
_pdbx_struct_conn_angle.ptnr2_auth_comp_id 
_pdbx_struct_conn_angle.ptnr2_auth_seq_id 
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr2_symmetry 
_pdbx_struct_conn_angle.ptnr3_label_atom_id 
_pdbx_struct_conn_angle.ptnr3_label_alt_id 
_pdbx_struct_conn_angle.ptnr3_label_asym_id 
_pdbx_struct_conn_angle.ptnr3_label_comp_id 
_pdbx_struct_conn_angle.ptnr3_label_seq_id 
_pdbx_struct_conn_angle.ptnr3_auth_atom_id 
_pdbx_struct_conn_angle.ptnr3_auth_asym_id 
_pdbx_struct_conn_angle.ptnr3_auth_comp_id 
_pdbx_struct_conn_angle.ptnr3_auth_seq_id 
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr3_symmetry 
_pdbx_struct_conn_angle.value 
_pdbx_struct_conn_angle.value_esd 
1  O6 ? A G 3  ? A G 3  ? 1_555 K ? C K . ? A K 22 ? 1_555 O6 ? A G 4  ? A G 4  ? 1_555 73.8  ? 
2  O6 ? A G 3  ? A G 3  ? 1_555 K ? C K . ? A K 22 ? 1_555 O6 ? A G 9  ? A G 9  ? 1_555 81.0  ? 
3  O6 ? A G 4  ? A G 4  ? 1_555 K ? C K . ? A K 22 ? 1_555 O6 ? A G 9  ? A G 9  ? 1_555 87.3  ? 
4  O6 ? A G 3  ? A G 3  ? 1_555 K ? C K . ? A K 22 ? 1_555 O6 ? A G 10 ? A G 10 ? 1_555 135.5 ? 
5  O6 ? A G 4  ? A G 4  ? 1_555 K ? C K . ? A K 22 ? 1_555 O6 ? A G 10 ? A G 10 ? 1_555 66.9  ? 
6  O6 ? A G 9  ? A G 9  ? 1_555 K ? C K . ? A K 22 ? 1_555 O6 ? A G 10 ? A G 10 ? 1_555 77.3  ? 
7  O6 ? A G 4  ? A G 4  ? 1_555 K ? B K . ? A K 21 ? 1_555 O6 ? A G 5  ? A G 5  ? 1_555 63.3  ? 
8  O6 ? A G 4  ? A G 4  ? 1_555 K ? B K . ? A K 21 ? 1_555 O6 ? A G 10 ? A G 10 ? 1_555 78.8  ? 
9  O6 ? A G 5  ? A G 5  ? 1_555 K ? B K . ? A K 21 ? 1_555 O6 ? A G 10 ? A G 10 ? 1_555 97.9  ? 
10 O6 ? A G 4  ? A G 4  ? 1_555 K ? B K . ? A K 21 ? 1_555 O6 ? A G 11 ? A G 11 ? 1_555 120.0 ? 
11 O6 ? A G 5  ? A G 5  ? 1_555 K ? B K . ? A K 21 ? 1_555 O6 ? A G 11 ? A G 11 ? 1_555 74.6  ? 
12 O6 ? A G 10 ? A G 10 ? 1_555 K ? B K . ? A K 21 ? 1_555 O6 ? A G 11 ? A G 11 ? 1_555 66.4  ? 
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2011-02-16 
2 'Structure model' 1 1 2011-07-13 
3 'Structure model' 1 2 2023-09-06 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Data collection'           
3 3 'Structure model' 'Database references'       
4 3 'Structure model' 'Derived calculations'      
5 3 'Structure model' 'Refinement description'    
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 3 'Structure model' chem_comp_atom                
2 3 'Structure model' chem_comp_bond                
3 3 'Structure model' database_2                    
4 3 'Structure model' pdbx_initial_refinement_model 
5 3 'Structure model' pdbx_struct_conn_angle        
6 3 'Structure model' struct_conn                   
7 3 'Structure model' struct_site                   
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1  3 'Structure model' '_database_2.pdbx_DOI'                       
2  3 'Structure model' '_database_2.pdbx_database_accession'        
3  3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'  
4  3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 
5  3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'  
6  3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 
7  3 'Structure model' '_pdbx_struct_conn_angle.value'              
8  3 'Structure model' '_struct_conn.pdbx_dist_value'               
9  3 'Structure model' '_struct_conn.ptnr1_auth_seq_id'             
10 3 'Structure model' '_struct_conn.ptnr1_label_seq_id'            
11 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id'             
12 3 'Structure model' '_struct_conn.ptnr2_label_asym_id'           
13 3 'Structure model' '_struct_site.pdbx_auth_asym_id'             
14 3 'Structure model' '_struct_site.pdbx_auth_comp_id'             
15 3 'Structure model' '_struct_site.pdbx_auth_seq_id'              
# 
loop_
_pdbx_refine_tls.pdbx_refine_id 
_pdbx_refine_tls.id 
_pdbx_refine_tls.details 
_pdbx_refine_tls.method 
_pdbx_refine_tls.origin_x 
_pdbx_refine_tls.origin_y 
_pdbx_refine_tls.origin_z 
_pdbx_refine_tls.T[1][1] 
_pdbx_refine_tls.T[2][2] 
_pdbx_refine_tls.T[3][3] 
_pdbx_refine_tls.T[1][2] 
_pdbx_refine_tls.T[1][3] 
_pdbx_refine_tls.T[2][3] 
_pdbx_refine_tls.L[1][1] 
_pdbx_refine_tls.L[2][2] 
_pdbx_refine_tls.L[3][3] 
_pdbx_refine_tls.L[1][2] 
_pdbx_refine_tls.L[1][3] 
_pdbx_refine_tls.L[2][3] 
_pdbx_refine_tls.S[1][1] 
_pdbx_refine_tls.S[2][2] 
_pdbx_refine_tls.S[3][3] 
_pdbx_refine_tls.S[1][2] 
_pdbx_refine_tls.S[1][3] 
_pdbx_refine_tls.S[2][3] 
_pdbx_refine_tls.S[2][1] 
_pdbx_refine_tls.S[3][1] 
_pdbx_refine_tls.S[3][2] 
'X-RAY DIFFRACTION' 1 ? refined 19.9659 -21.4686 -2.7363 0.1264 0.1472 0.2204 0.0291 0.0452  0.0420  6.8194 5.0378 2.5129 -1.0818 
-0.7852 -3.3089 -0.1504 -0.1088 0.2592  -0.0514 0.3473 0.1893 -0.0798 -0.4133 0.0868  
'X-RAY DIFFRACTION' 2 ? refined 19.1291 -29.4003 -6.8385 0.1336 0.1870 0.1853 0.0498 -0.0186 -0.0234 7.8860 5.3643 5.8467 1.0090  
0.5586  4.0655  0.0286  0.4676  -0.4961 0.4748  0.4414 0.6362 -0.0921 -0.1051 -0.5266 
# 
loop_
_pdbx_refine_tls_group.pdbx_refine_id 
_pdbx_refine_tls_group.id 
_pdbx_refine_tls_group.refine_tls_id 
_pdbx_refine_tls_group.beg_auth_asym_id 
_pdbx_refine_tls_group.beg_auth_seq_id 
_pdbx_refine_tls_group.end_auth_asym_id 
_pdbx_refine_tls_group.end_auth_seq_id 
_pdbx_refine_tls_group.selection_details 
_pdbx_refine_tls_group.beg_label_asym_id 
_pdbx_refine_tls_group.beg_label_seq_id 
_pdbx_refine_tls_group.end_label_asym_id 
_pdbx_refine_tls_group.end_label_seq_id 
_pdbx_refine_tls_group.selection 
'X-RAY DIFFRACTION' 1 1 A 1 A 6  ? . . . . ? 
'X-RAY DIFFRACTION' 2 2 A 7 A 12 ? . . . . ? 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
DNA          'data collection' .        ? 1 
PHASER       phasing           .        ? 2 
REFMAC       refinement        5.5.0072 ? 3 
CrystalClear 'data reduction'  .        ? 4 
CrystalClear 'data scaling'    .        ? 5 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
A   OP3    O N N 1   
A   P      P N N 2   
A   OP1    O N N 3   
A   OP2    O N N 4   
A   "O5'"  O N N 5   
A   "C5'"  C N N 6   
A   "C4'"  C N R 7   
A   "O4'"  O N N 8   
A   "C3'"  C N S 9   
A   "O3'"  O N N 10  
A   "C2'"  C N R 11  
A   "O2'"  O N N 12  
A   "C1'"  C N R 13  
A   N9     N Y N 14  
A   C8     C Y N 15  
A   N7     N Y N 16  
A   C5     C Y N 17  
A   C6     C Y N 18  
A   N6     N N N 19  
A   N1     N Y N 20  
A   C2     C Y N 21  
A   N3     N Y N 22  
A   C4     C Y N 23  
A   HOP3   H N N 24  
A   HOP2   H N N 25  
A   "H5'"  H N N 26  
A   "H5''" H N N 27  
A   "H4'"  H N N 28  
A   "H3'"  H N N 29  
A   "HO3'" H N N 30  
A   "H2'"  H N N 31  
A   "HO2'" H N N 32  
A   "H1'"  H N N 33  
A   H8     H N N 34  
A   H61    H N N 35  
A   H62    H N N 36  
A   H2     H N N 37  
G   OP3    O N N 38  
G   P      P N N 39  
G   OP1    O N N 40  
G   OP2    O N N 41  
G   "O5'"  O N N 42  
G   "C5'"  C N N 43  
G   "C4'"  C N R 44  
G   "O4'"  O N N 45  
G   "C3'"  C N S 46  
G   "O3'"  O N N 47  
G   "C2'"  C N R 48  
G   "O2'"  O N N 49  
G   "C1'"  C N R 50  
G   N9     N Y N 51  
G   C8     C Y N 52  
G   N7     N Y N 53  
G   C5     C Y N 54  
G   C6     C N N 55  
G   O6     O N N 56  
G   N1     N N N 57  
G   C2     C N N 58  
G   N2     N N N 59  
G   N3     N N N 60  
G   C4     C Y N 61  
G   HOP3   H N N 62  
G   HOP2   H N N 63  
G   "H5'"  H N N 64  
G   "H5''" H N N 65  
G   "H4'"  H N N 66  
G   "H3'"  H N N 67  
G   "HO3'" H N N 68  
G   "H2'"  H N N 69  
G   "HO2'" H N N 70  
G   "H1'"  H N N 71  
G   H8     H N N 72  
G   H1     H N N 73  
G   H21    H N N 74  
G   H22    H N N 75  
HOH O      O N N 76  
HOH H1     H N N 77  
HOH H2     H N N 78  
K   K      K N N 79  
R14 CAA    C N N 80  
R14 CAB    C N N 81  
R14 CAC    C N N 82  
R14 CAD    C N N 83  
R14 OAE    O N N 84  
R14 OAF    O N N 85  
R14 CAG    C Y N 86  
R14 CAH    C Y N 87  
R14 CAI    C Y N 88  
R14 CAJ    C Y N 89  
R14 CAK    C Y N 90  
R14 CAL    C Y N 91  
R14 CAM    C Y N 92  
R14 CAN    C Y N 93  
R14 CAO    C Y N 94  
R14 CAP    C Y N 95  
R14 CAQ    C Y N 96  
R14 CAR    C Y N 97  
R14 CAS    C Y N 98  
R14 CAT    C Y N 99  
R14 CAU    C Y N 100 
R14 CAV    C Y N 101 
R14 CAW    C Y N 102 
R14 CAX    C N N 103 
R14 CAY    C N N 104 
R14 CAZ    C N N 105 
R14 CBA    C N N 106 
R14 CBB    C N N 107 
R14 CBC    C N N 108 
R14 CBD    C N N 109 
R14 CBE    C N N 110 
R14 NBF    N Y N 111 
R14 NBG    N Y N 112 
R14 NBH    N Y N 113 
R14 NBI    N Y N 114 
R14 NBJ    N Y N 115 
R14 NBK    N N N 116 
R14 NBL    N N N 117 
R14 CBM    C N N 118 
R14 CBN    C N N 119 
R14 CBO    C Y N 120 
R14 CBP    C Y N 121 
R14 CBQ    C Y N 122 
R14 CBR    C Y N 123 
R14 CBS    C Y N 124 
R14 CBT    C Y N 125 
R14 CBU    C Y N 126 
R14 CBV    C Y N 127 
R14 CBW    C Y N 128 
R14 CBX    C Y N 129 
R14 CBY    C Y N 130 
R14 CBZ    C Y N 131 
R14 NCA    N N N 132 
R14 NCB    N N N 133 
R14 NCC    N Y N 134 
R14 NCD    N Y N 135 
R14 HAA    H N N 136 
R14 HAAA   H N N 137 
R14 HAAB   H N N 138 
R14 HAB    H N N 139 
R14 HABA   H N N 140 
R14 HABB   H N N 141 
R14 HAC    H N N 142 
R14 HACA   H N N 143 
R14 HACB   H N N 144 
R14 HAD    H N N 145 
R14 HADA   H N N 146 
R14 HADB   H N N 147 
R14 HAG    H N N 148 
R14 HAH    H N N 149 
R14 HAI    H N N 150 
R14 HAJ    H N N 151 
R14 HAK    H N N 152 
R14 HAL    H N N 153 
R14 HAM    H N N 154 
R14 HAN    H N N 155 
R14 HAO    H N N 156 
R14 HAP    H N N 157 
R14 HAQ    H N N 158 
R14 HAR    H N N 159 
R14 HAS    H N N 160 
R14 HAT    H N N 161 
R14 HAU    H N N 162 
R14 HAV    H N N 163 
R14 HAW    H N N 164 
R14 HAX    H N N 165 
R14 HAXA   H N N 166 
R14 HAY    H N N 167 
R14 HAYA   H N N 168 
R14 HAZ    H N N 169 
R14 HAZA   H N N 170 
R14 HBA    H N N 171 
R14 HBAA   H N N 172 
R14 HBB    H N N 173 
R14 HBBA   H N N 174 
R14 HBC    H N N 175 
R14 HBCA   H N N 176 
R14 HBD    H N N 177 
R14 HBDA   H N N 178 
R14 HBE    H N N 179 
R14 HBEA   H N N 180 
R14 HNBK   H N N 181 
R14 HNBL   H N N 182 
U   OP3    O N N 183 
U   P      P N N 184 
U   OP1    O N N 185 
U   OP2    O N N 186 
U   "O5'"  O N N 187 
U   "C5'"  C N N 188 
U   "C4'"  C N R 189 
U   "O4'"  O N N 190 
U   "C3'"  C N S 191 
U   "O3'"  O N N 192 
U   "C2'"  C N R 193 
U   "O2'"  O N N 194 
U   "C1'"  C N R 195 
U   N1     N N N 196 
U   C2     C N N 197 
U   O2     O N N 198 
U   N3     N N N 199 
U   C4     C N N 200 
U   O4     O N N 201 
U   C5     C N N 202 
U   C6     C N N 203 
U   HOP3   H N N 204 
U   HOP2   H N N 205 
U   "H5'"  H N N 206 
U   "H5''" H N N 207 
U   "H4'"  H N N 208 
U   "H3'"  H N N 209 
U   "HO3'" H N N 210 
U   "H2'"  H N N 211 
U   "HO2'" H N N 212 
U   "H1'"  H N N 213 
U   H3     H N N 214 
U   H5     H N N 215 
U   H6     H N N 216 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A   OP3   P      sing N N 1   
A   OP3   HOP3   sing N N 2   
A   P     OP1    doub N N 3   
A   P     OP2    sing N N 4   
A   P     "O5'"  sing N N 5   
A   OP2   HOP2   sing N N 6   
A   "O5'" "C5'"  sing N N 7   
A   "C5'" "C4'"  sing N N 8   
A   "C5'" "H5'"  sing N N 9   
A   "C5'" "H5''" sing N N 10  
A   "C4'" "O4'"  sing N N 11  
A   "C4'" "C3'"  sing N N 12  
A   "C4'" "H4'"  sing N N 13  
A   "O4'" "C1'"  sing N N 14  
A   "C3'" "O3'"  sing N N 15  
A   "C3'" "C2'"  sing N N 16  
A   "C3'" "H3'"  sing N N 17  
A   "O3'" "HO3'" sing N N 18  
A   "C2'" "O2'"  sing N N 19  
A   "C2'" "C1'"  sing N N 20  
A   "C2'" "H2'"  sing N N 21  
A   "O2'" "HO2'" sing N N 22  
A   "C1'" N9     sing N N 23  
A   "C1'" "H1'"  sing N N 24  
A   N9    C8     sing Y N 25  
A   N9    C4     sing Y N 26  
A   C8    N7     doub Y N 27  
A   C8    H8     sing N N 28  
A   N7    C5     sing Y N 29  
A   C5    C6     sing Y N 30  
A   C5    C4     doub Y N 31  
A   C6    N6     sing N N 32  
A   C6    N1     doub Y N 33  
A   N6    H61    sing N N 34  
A   N6    H62    sing N N 35  
A   N1    C2     sing Y N 36  
A   C2    N3     doub Y N 37  
A   C2    H2     sing N N 38  
A   N3    C4     sing Y N 39  
G   OP3   P      sing N N 40  
G   OP3   HOP3   sing N N 41  
G   P     OP1    doub N N 42  
G   P     OP2    sing N N 43  
G   P     "O5'"  sing N N 44  
G   OP2   HOP2   sing N N 45  
G   "O5'" "C5'"  sing N N 46  
G   "C5'" "C4'"  sing N N 47  
G   "C5'" "H5'"  sing N N 48  
G   "C5'" "H5''" sing N N 49  
G   "C4'" "O4'"  sing N N 50  
G   "C4'" "C3'"  sing N N 51  
G   "C4'" "H4'"  sing N N 52  
G   "O4'" "C1'"  sing N N 53  
G   "C3'" "O3'"  sing N N 54  
G   "C3'" "C2'"  sing N N 55  
G   "C3'" "H3'"  sing N N 56  
G   "O3'" "HO3'" sing N N 57  
G   "C2'" "O2'"  sing N N 58  
G   "C2'" "C1'"  sing N N 59  
G   "C2'" "H2'"  sing N N 60  
G   "O2'" "HO2'" sing N N 61  
G   "C1'" N9     sing N N 62  
G   "C1'" "H1'"  sing N N 63  
G   N9    C8     sing Y N 64  
G   N9    C4     sing Y N 65  
G   C8    N7     doub Y N 66  
G   C8    H8     sing N N 67  
G   N7    C5     sing Y N 68  
G   C5    C6     sing N N 69  
G   C5    C4     doub Y N 70  
G   C6    O6     doub N N 71  
G   C6    N1     sing N N 72  
G   N1    C2     sing N N 73  
G   N1    H1     sing N N 74  
G   C2    N2     sing N N 75  
G   C2    N3     doub N N 76  
G   N2    H21    sing N N 77  
G   N2    H22    sing N N 78  
G   N3    C4     sing N N 79  
HOH O     H1     sing N N 80  
HOH O     H2     sing N N 81  
R14 CAX   CAA    sing N N 82  
R14 CAA   HAA    sing N N 83  
R14 CAA   HAAA   sing N N 84  
R14 CAA   HAAB   sing N N 85  
R14 CAY   CAB    sing N N 86  
R14 CAB   HAB    sing N N 87  
R14 CAB   HABA   sing N N 88  
R14 CAB   HABB   sing N N 89  
R14 CAC   CAZ    sing N N 90  
R14 CAC   HAC    sing N N 91  
R14 CAC   HACA   sing N N 92  
R14 CAC   HACB   sing N N 93  
R14 CAD   CBA    sing N N 94  
R14 CAD   HAD    sing N N 95  
R14 CAD   HADA   sing N N 96  
R14 CAD   HADB   sing N N 97  
R14 OAE   CBM    doub N N 98  
R14 CBN   OAF    doub N N 99  
R14 CAK   CAG    doub Y N 100 
R14 CAG   CAI    sing Y N 101 
R14 CAG   HAG    sing N N 102 
R14 CAJ   CAH    doub Y N 103 
R14 CAH   CAL    sing Y N 104 
R14 CAH   HAH    sing N N 105 
R14 CAI   CBO    doub Y N 106 
R14 CAI   HAI    sing N N 107 
R14 CBP   CAJ    sing Y N 108 
R14 CAJ   HAJ    sing N N 109 
R14 CAK   CBQ    sing Y N 110 
R14 CAK   HAK    sing N N 111 
R14 CBR   CAL    doub Y N 112 
R14 CAL   HAL    sing N N 113 
R14 CAO   CAM    doub Y N 114 
R14 CAM   CBS    sing Y N 115 
R14 CAM   HAM    sing N N 116 
R14 CAN   CBT    doub Y N 117 
R14 CAN   CAP    sing Y N 118 
R14 CAN   HAN    sing N N 119 
R14 CBW   CAO    sing Y N 120 
R14 CAO   HAO    sing N N 121 
R14 CAP   CBX    doub Y N 122 
R14 CAP   HAP    sing N N 123 
R14 CBQ   CAQ    doub Y N 124 
R14 CAQ   CBO    sing Y N 125 
R14 CAQ   HAQ    sing N N 126 
R14 CBP   CAR    doub Y N 127 
R14 CAR   CBR    sing Y N 128 
R14 CAR   HAR    sing N N 129 
R14 CBY   CAS    sing Y N 130 
R14 CAS   CBS    doub Y N 131 
R14 CAS   HAS    sing N N 132 
R14 CBT   CAT    sing Y N 133 
R14 CAT   CBZ    doub Y N 134 
R14 CAT   HAT    sing N N 135 
R14 CBX   CAU    sing Y N 136 
R14 CAU   CBW    doub Y N 137 
R14 CAU   HAU    sing N N 138 
R14 NCC   CAV    sing Y N 139 
R14 CAV   CBU    doub Y N 140 
R14 CAV   HAV    sing N N 141 
R14 CBV   CAW    doub Y N 142 
R14 NCD   CAW    sing Y N 143 
R14 CAW   HAW    sing N N 144 
R14 NCA   CAX    sing N N 145 
R14 CAX   HAX    sing N N 146 
R14 CAX   HAXA   sing N N 147 
R14 CAY   NCA    sing N N 148 
R14 CAY   HAY    sing N N 149 
R14 CAY   HAYA   sing N N 150 
R14 CAZ   NCB    sing N N 151 
R14 CAZ   HAZ    sing N N 152 
R14 CAZ   HAZA   sing N N 153 
R14 NCB   CBA    sing N N 154 
R14 CBA   HBA    sing N N 155 
R14 CBA   HBAA   sing N N 156 
R14 CBM   CBB    sing N N 157 
R14 CBB   CBD    sing N N 158 
R14 CBB   HBB    sing N N 159 
R14 CBB   HBBA   sing N N 160 
R14 CBE   CBC    sing N N 161 
R14 CBC   CBN    sing N N 162 
R14 CBC   HBC    sing N N 163 
R14 CBC   HBCA   sing N N 164 
R14 CBD   NCA    sing N N 165 
R14 CBD   HBD    sing N N 166 
R14 CBD   HBDA   sing N N 167 
R14 NCB   CBE    sing N N 168 
R14 CBE   HBE    sing N N 169 
R14 CBE   HBEA   sing N N 170 
R14 NBH   NBF    doub Y N 171 
R14 CBU   NBF    sing Y N 172 
R14 NBG   NBI    doub Y N 173 
R14 NBG   CBV    sing Y N 174 
R14 NCC   NBH    sing Y N 175 
R14 NBI   NCD    sing Y N 176 
R14 CBZ   NBJ    sing Y N 177 
R14 NBJ   CBY    doub Y N 178 
R14 CBO   NBK    sing N N 179 
R14 NBK   CBM    sing N N 180 
R14 NBK   HNBK   sing N N 181 
R14 CBN   NBL    sing N N 182 
R14 NBL   CBP    sing N N 183 
R14 NBL   HNBL   sing N N 184 
R14 CBU   CBQ    sing Y N 185 
R14 CBR   CBV    sing Y N 186 
R14 CBS   NCC    sing Y N 187 
R14 NCD   CBT    sing Y N 188 
R14 CBW   CBY    sing Y N 189 
R14 CBX   CBZ    sing Y N 190 
U   OP3   P      sing N N 191 
U   OP3   HOP3   sing N N 192 
U   P     OP1    doub N N 193 
U   P     OP2    sing N N 194 
U   P     "O5'"  sing N N 195 
U   OP2   HOP2   sing N N 196 
U   "O5'" "C5'"  sing N N 197 
U   "C5'" "C4'"  sing N N 198 
U   "C5'" "H5'"  sing N N 199 
U   "C5'" "H5''" sing N N 200 
U   "C4'" "O4'"  sing N N 201 
U   "C4'" "C3'"  sing N N 202 
U   "C4'" "H4'"  sing N N 203 
U   "O4'" "C1'"  sing N N 204 
U   "C3'" "O3'"  sing N N 205 
U   "C3'" "C2'"  sing N N 206 
U   "C3'" "H3'"  sing N N 207 
U   "O3'" "HO3'" sing N N 208 
U   "C2'" "O2'"  sing N N 209 
U   "C2'" "C1'"  sing N N 210 
U   "C2'" "H2'"  sing N N 211 
U   "O2'" "HO2'" sing N N 212 
U   "C1'" N1     sing N N 213 
U   "C1'" "H1'"  sing N N 214 
U   N1    C2     sing N N 215 
U   N1    C6     sing N N 216 
U   C2    O2     doub N N 217 
U   C2    N3     sing N N 218 
U   N3    C4     sing N N 219 
U   N3    H3     sing N N 220 
U   C4    O4     doub N N 221 
U   C4    C5     sing N N 222 
U   C5    C6     doub N N 223 
U   C5    H5     sing N N 224 
U   C6    H6     sing N N 225 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
3MIJ 'double helix'         
3MIJ 'parallel strands'     
3MIJ 'mismatched base pair' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A G 3 1_555 A G 9  1_555 1.799 3.439 0.266  -7.931 2.474  -88.368 1 A_G3:G9_A  A 3 ? A 9  ? 6 3 
1 A G 4 1_555 A G 10 1_555 1.653 3.863 0.510  -8.953 -0.269 -87.937 2 A_G4:G10_A A 4 ? A 10 ? 6 3 
1 A G 5 1_555 A G 11 1_555 1.793 3.246 -0.011 6.900  -9.546 -92.780 3 A_G5:G11_A A 5 ? A 11 ? 6 3 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A G 3 1_555 A G 9  1_555 A G 4 1_555 A G 10 1_555 -0.427 -1.320 3.171 2.164 -0.788 30.571 -2.346 1.220 3.166 -1.492 -4.097  
30.656 1 AA_G3G4:G10G9_AA  A 3 ? A 9  ? A 4 ? A 10 ? 
1 A G 4 1_555 A G 10 1_555 A G 5 1_555 A G 11 1_555 -0.321 -0.862 2.901 8.836 4.613  26.731 -2.648 2.372 2.490 9.565  -18.321 
28.497 2 AA_G4G5:G11G10_AA A 4 ? A 10 ? A 5 ? A 11 ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 'POTASSIUM ION'                                                                                           K   
3 "N,N'-[acridine-3,6-diylbis(1H-1,2,3-triazole-1,4-diylbenzene-3,1-diyl)]bis[3-(diethylamino)propanamide]" R14 
4 water                                                                                                     HOH 
# 
_pdbx_initial_refinement_model.id               1 
_pdbx_initial_refinement_model.entity_id_list   ? 
_pdbx_initial_refinement_model.type             'experimental model' 
_pdbx_initial_refinement_model.source_name      PDB 
_pdbx_initial_refinement_model.accession_code   3IBK 
_pdbx_initial_refinement_model.details          'PDB ID 3IBK' 
#