HEADER DE NOVO PROTEIN/DNA 11-APR-10 3MIP TITLE I-MSOI RE-DESIGNED FOR ALTERED DNA CLEAVAGE SPECIFICITY (-8GCG) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MSO-8G; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'- COMPND 7 D(*GP*CP*AP*GP*GP*CP*GP*GP*TP*CP*GP*TP*GP*AP*GP*AP*CP*CP*GP*CP*TP*CP* COMPND 8 CP*G)-3'); COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: TOP STRAND OLIGONUCLEOTIDE TARGET; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(*CP*GP*GP*AP*GP*CP*GP*GP*TP*CP*TP*CP*AP*CP*GP*AP*CP*CP*GP*CP*CP*TP* COMPND 15 GP*C)-3'); COMPND 16 CHAIN: D; COMPND 17 ENGINEERED: YES; COMPND 18 OTHER_DETAILS: BOTTOM STRAND OLIGONUCLEOTIDE TARGET SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_COMMON: ARTIFICIAL GENE; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24D; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES KEYWDS PROTEIN-DNA COMPLEX, HOMING NUCLEASE, ROSETTA DESIGN, DE NOVO KEYWDS 2 PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.K.TAYLOR,B.L.STODDARD REVDAT 3 21-FEB-24 3MIP 1 REMARK LINK REVDAT 2 06-OCT-10 3MIP 1 JRNL REVDAT 1 19-MAY-10 3MIP 0 JRNL AUTH J.ASHWORTH,G.K.TAYLOR,J.J.HAVRANEK,S.A.QUADRI,B.L.STODDARD, JRNL AUTH 2 D.BAKER JRNL TITL COMPUTATIONAL REPROGRAMMING OF HOMING ENDONUCLEASE JRNL TITL 2 SPECIFICITY AT MULTIPLE ADJACENT BASE PAIRS. JRNL REF NUCLEIC ACIDS RES. V. 38 5601 2010 JRNL REFN ISSN 0305-1048 JRNL PMID 20435674 JRNL DOI 10.1093/NAR/GKQ283 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.070 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 3 NUMBER OF REFLECTIONS : 15769 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1582 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.9599 - 5.3122 0.98 1381 158 0.1700 0.2023 REMARK 3 2 5.3122 - 4.2251 0.97 1387 146 0.1581 0.2450 REMARK 3 3 4.2251 - 3.6935 0.96 1382 154 0.2047 0.2593 REMARK 3 4 3.6935 - 3.3569 0.97 1375 153 0.2148 0.2687 REMARK 3 5 3.3569 - 3.1169 0.94 1320 149 0.2365 0.2684 REMARK 3 6 3.1169 - 2.9336 0.90 1294 144 0.2731 0.3567 REMARK 3 7 2.9336 - 2.7869 0.87 1243 140 0.2982 0.3908 REMARK 3 8 2.7869 - 2.6658 0.86 1195 133 0.3047 0.3468 REMARK 3 9 2.6658 - 2.5633 0.87 1255 141 0.2891 0.3296 REMARK 3 10 2.5633 - 2.4750 0.86 1187 138 0.2981 0.3504 REMARK 3 11 2.4750 - 2.4000 0.82 1168 126 0.2852 0.3376 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 35.97 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3790 REMARK 3 ANGLE : 1.184 5318 REMARK 3 CHIRALITY : 0.061 586 REMARK 3 PLANARITY : 0.004 516 REMARK 3 DIHEDRAL : 23.181 1510 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 4.6726 -2.6558 -1.3208 REMARK 3 T TENSOR REMARK 3 T11: 0.1794 T22: 0.1668 REMARK 3 T33: 0.2312 T12: -0.0048 REMARK 3 T13: -0.0559 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: -0.0454 L22: 0.5466 REMARK 3 L33: 1.2547 L12: 0.1304 REMARK 3 L13: -0.2845 L23: 0.0154 REMARK 3 S TENSOR REMARK 3 S11: -0.0986 S12: 0.3187 S13: -0.1741 REMARK 3 S21: -0.2350 S22: 0.2104 S23: -0.2560 REMARK 3 S31: 0.6133 S32: 0.3061 S33: -0.1776 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 6:166 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 6:166 ) REMARK 3 ATOM PAIRS NUMBER : 1322 REMARK 3 RMSD : 0.013 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3MIP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058593. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : CONFOCAL VARIMAX OPTICS SYSTEMS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17356 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.17800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 100MM TRIS, 20MM NACL, REMARK 280 5MM CACL2, PH 7.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 118 O HOH A 188 1.80 REMARK 500 O SER B 150 O HOH B 171 1.81 REMARK 500 O HOH A 183 O HOH A 187 1.81 REMARK 500 O3' DG C -12 O HOH C 52 1.84 REMARK 500 N GLY B 66 O HOH B 182 1.86 REMARK 500 OD2 ASP B 136 O HOH B 170 1.86 REMARK 500 NH2 ARG B 83 O HOH B 174 1.87 REMARK 500 O HOH B 177 O HOH B 191 1.87 REMARK 500 O HOH A 195 O HOH A 198 1.88 REMARK 500 N LYS A 149 O HOH A 176 1.88 REMARK 500 OE2 GLU A 147 O HOH A 182 1.89 REMARK 500 O VAL A 98 O HOH A 178 1.90 REMARK 500 NE2 GLN B 41 O HOH B 188 1.90 REMARK 500 OP2 DG D -11 O HOH D 80 1.90 REMARK 500 O3' DC D -1 O HOH D 84 1.90 REMARK 500 OE2 GLU B 147 O HOH B 186 1.93 REMARK 500 OH TYR A 85 O HOH A 5 1.93 REMARK 500 N3 DG C -2 O HOH C 78 1.93 REMARK 500 CA LEU A 148 O HOH A 176 1.93 REMARK 500 O HOH D 18 O HOH D 67 1.95 REMARK 500 O HOH A 169 O HOH A 194 1.95 REMARK 500 CE LYS A 105 O HOH A 178 1.95 REMARK 500 O SER A 150 O HOH A 181 1.96 REMARK 500 OP2 DA D -9 O HOH B 188 1.97 REMARK 500 OD1 ASP A 60 O HOH A 202 1.97 REMARK 500 CG LYS A 105 O HOH A 178 1.99 REMARK 500 OD1 ASP A 81 O HOH A 179 2.00 REMARK 500 NE2 GLN A 59 O HOH A 177 2.00 REMARK 500 O HOH A 183 O HOH A 192 2.00 REMARK 500 N GLY A 66 O HOH A 180 2.02 REMARK 500 N LYS B 149 O HOH B 176 2.03 REMARK 500 CD LYS A 36 O HOH C 52 2.03 REMARK 500 OP1 DG D -11 O HOH D 80 2.03 REMARK 500 NE2 HIS B 89 O HOH B 179 2.06 REMARK 500 OP1 DG C -9 O HOH C 47 2.06 REMARK 500 OH TYR B 85 O HOH B 4 2.07 REMARK 500 C5' DA D 1 O HOH D 84 2.08 REMARK 500 CA LEU B 148 O HOH B 176 2.08 REMARK 500 N1 DG C -5 O HOH C 74 2.09 REMARK 500 P DG D -11 O HOH D 80 2.10 REMARK 500 C6 DG C -6 O HOH C 74 2.12 REMARK 500 O GLN B 64 O HOH B 183 2.12 REMARK 500 OP1 DC C -11 O HOH C 52 2.13 REMARK 500 CD LYS B 36 O HOH D 80 2.14 REMARK 500 C6 DG C -5 O HOH C 74 2.14 REMARK 500 N3 DG D 3 O HOH D 67 2.14 REMARK 500 OD2 ASP A 63 O HOH A 177 2.15 REMARK 500 N1 DG C -6 O HOH C 74 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C -11 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DA C -10 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC C -7 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG C -6 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG C -5 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT C -4 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DA C 2 C3' - C2' - C1' ANGL. DEV. = -6.0 DEGREES REMARK 500 DG C 7 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DC C 8 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC C 10 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC D -12 C1' - O4' - C4' ANGL. DEV. = -7.4 DEGREES REMARK 500 DC D -12 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG D -11 O5' - C5' - C4' ANGL. DEV. = -4.8 DEGREES REMARK 500 DG D -11 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG D -10 O4' - C1' - N9 ANGL. DEV. = 5.1 DEGREES REMARK 500 DC D -7 C1' - O4' - C4' ANGL. DEV. = -7.5 DEGREES REMARK 500 DC D -7 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG D -5 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT D -4 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC D 8 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC D 12 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 36 -117.39 -81.20 REMARK 500 LYS A 39 45.97 -85.15 REMARK 500 GLN A 59 -71.87 -22.86 REMARK 500 LEU A 65 54.36 -104.80 REMARK 500 LYS A 73 -24.16 -29.16 REMARK 500 LYS A 123 62.47 -104.45 REMARK 500 ASN A 124 86.38 -161.85 REMARK 500 ASN A 142 33.22 -84.65 REMARK 500 ALA A 145 -8.57 -56.13 REMARK 500 SER A 150 151.40 -31.08 REMARK 500 THR A 151 47.04 -146.37 REMARK 500 GLU A 158 -50.64 -28.65 REMARK 500 LYS B 36 -117.74 -81.29 REMARK 500 LYS B 39 46.10 -85.66 REMARK 500 GLN B 59 -72.80 -22.04 REMARK 500 LEU B 65 54.95 -103.72 REMARK 500 LYS B 73 -23.85 -29.15 REMARK 500 LYS B 123 62.53 -104.62 REMARK 500 ASN B 124 86.56 -161.60 REMARK 500 ASN B 142 32.28 -83.68 REMARK 500 ALA B 145 -9.20 -56.40 REMARK 500 SER B 150 151.48 -30.76 REMARK 500 THR B 151 46.86 -146.57 REMARK 500 GLU B 158 -50.72 -28.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 2 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 22 OD1 REMARK 620 2 ASP A 22 OD2 47.5 REMARK 620 3 GLY B 21 O 94.7 94.8 REMARK 620 4 HOH B 169 O 136.1 174.4 89.3 REMARK 620 5 DG C 3 OP2 126.1 79.7 77.8 97.5 REMARK 620 6 DC D 2 OP1 83.1 75.3 168.4 100.2 94.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 3 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 21 O REMARK 620 2 ASP B 22 OD1 90.6 REMARK 620 3 ASP B 22 OD2 93.6 47.6 REMARK 620 4 HOH B 168 O 88.9 78.6 126.2 REMARK 620 5 HOH B 190 O 86.7 134.7 177.7 56.1 REMARK 620 6 DA C 2 OP1 173.8 84.8 80.2 94.2 99.4 REMARK 620 7 DG D 3 OP2 81.7 134.7 88.1 145.1 89.6 98.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 13 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 22 OD2 REMARK 620 2 ASP B 22 OD2 132.4 REMARK 620 3 DG C 3 OP2 87.3 100.3 REMARK 620 4 DC D 2 O3' 80.8 141.1 101.2 REMARK 620 5 DG D 3 OP2 113.8 91.7 137.7 51.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 13 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KO2 RELATED DB: PDB REMARK 900 RELATED ID: 3MIS RELATED DB: PDB DBREF 3MIP A 6 166 PDB 3MIP 3MIP 6 166 DBREF 3MIP B 6 166 PDB 3MIP 3MIP 6 166 DBREF 3MIP C -12 12 PDB 3MIP 3MIP -12 12 DBREF 3MIP D -12 12 PDB 3MIP 3MIP -12 12 SEQRES 1 A 161 THR LEU GLN PRO THR GLU ALA ALA TYR ILE ALA GLY PHE SEQRES 2 A 161 LEU ASP GLY ASP GLY SER ILE TYR ALA ARG LEU GLU PRO SEQRES 3 A 161 ARG PRO ASP TYR LYS ASP ILE LYS TYR GLN VAL ARG LEU SEQRES 4 A 161 ALA ILE SER PHE ILE GLN ARG LYS ASP LYS PHE PRO TYR SEQRES 5 A 161 LEU GLN ASP ILE TYR ASP GLN LEU GLY LYS ARG GLY ILE SEQRES 6 A 161 LEU ARG LYS ASP ARG GLY ASP GLY ILE ALA ASP TYR ARG SEQRES 7 A 161 ILE TYR GLY SER THR HIS LEU SER ILE ILE LEU PRO ASP SEQRES 8 A 161 LEU VAL PRO TYR LEU ARG ILE LYS LYS LYS GLN ALA ASN SEQRES 9 A 161 ARG ILE LEU HIS ILE ILE ASN LEU TYR PRO GLN ALA GLN SEQRES 10 A 161 LYS ASN PRO SER LYS PHE LEU ASP LEU VAL LYS ILE VAL SEQRES 11 A 161 ASP ASP VAL GLN ASN LEU ASN LYS ARG ALA ASP GLU LEU SEQRES 12 A 161 LYS SER THR ASN TYR ASP ARG LEU LEU GLU GLU PHE LEU SEQRES 13 A 161 LYS ALA GLY LYS ILE SEQRES 1 B 161 THR LEU GLN PRO THR GLU ALA ALA TYR ILE ALA GLY PHE SEQRES 2 B 161 LEU ASP GLY ASP GLY SER ILE TYR ALA ARG LEU GLU PRO SEQRES 3 B 161 ARG PRO ASP TYR LYS ASP ILE LYS TYR GLN VAL ARG LEU SEQRES 4 B 161 ALA ILE SER PHE ILE GLN ARG LYS ASP LYS PHE PRO TYR SEQRES 5 B 161 LEU GLN ASP ILE TYR ASP GLN LEU GLY LYS ARG GLY ILE SEQRES 6 B 161 LEU ARG LYS ASP ARG GLY ASP GLY ILE ALA ASP TYR ARG SEQRES 7 B 161 ILE TYR GLY SER THR HIS LEU SER ILE ILE LEU PRO ASP SEQRES 8 B 161 LEU VAL PRO TYR LEU ARG ILE LYS LYS LYS GLN ALA ASN SEQRES 9 B 161 ARG ILE LEU HIS ILE ILE ASN LEU TYR PRO GLN ALA GLN SEQRES 10 B 161 LYS ASN PRO SER LYS PHE LEU ASP LEU VAL LYS ILE VAL SEQRES 11 B 161 ASP ASP VAL GLN ASN LEU ASN LYS ARG ALA ASP GLU LEU SEQRES 12 B 161 LYS SER THR ASN TYR ASP ARG LEU LEU GLU GLU PHE LEU SEQRES 13 B 161 LYS ALA GLY LYS ILE SEQRES 1 C 24 DG DC DA DG DG DC DG DG DT DC DG DT DG SEQRES 2 C 24 DA DG DA DC DC DG DC DT DC DC DG SEQRES 1 D 24 DC DG DG DA DG DC DG DG DT DC DT DC DA SEQRES 2 D 24 DC DG DA DC DC DG DC DC DT DG DC HET CA A 2 1 HET CA B 3 1 HET CA D 13 1 HETNAM CA CALCIUM ION FORMUL 5 CA 3(CA 2+) FORMUL 8 HOH *87(H2 O) HELIX 1 1 GLN A 8 ASP A 22 1 15 HELIX 2 2 PHE A 55 LEU A 65 1 11 HELIX 3 3 GLY A 86 VAL A 98 1 13 HELIX 4 4 PRO A 99 LEU A 101 5 3 HELIX 5 5 LYS A 104 GLN A 122 1 19 HELIX 6 6 ASN A 124 ASN A 142 1 19 HELIX 7 7 THR A 151 ALA A 163 1 13 HELIX 8 8 GLN B 8 ASP B 22 1 15 HELIX 9 9 LYS B 54 LEU B 65 1 12 HELIX 10 10 GLY B 86 VAL B 98 1 13 HELIX 11 11 PRO B 99 LEU B 101 5 3 HELIX 12 12 LYS B 104 GLN B 122 1 19 HELIX 13 13 ASN B 124 ASN B 142 1 19 HELIX 14 14 THR B 151 ALA B 163 1 13 SHEET 1 A 4 GLY A 23 PRO A 31 0 SHEET 2 A 4 TYR A 40 ARG A 51 -1 O ARG A 43 N ARG A 28 SHEET 3 A 4 ILE A 79 TYR A 85 -1 O ILE A 84 N ILE A 46 SHEET 4 A 4 ILE A 70 LEU A 71 -1 N ILE A 70 O ARG A 83 SHEET 1 B 4 GLY B 23 PRO B 31 0 SHEET 2 B 4 TYR B 40 ARG B 51 -1 O ARG B 43 N ARG B 28 SHEET 3 B 4 ILE B 79 TYR B 85 -1 O ILE B 84 N ILE B 46 SHEET 4 B 4 ILE B 70 LEU B 71 -1 N ILE B 70 O ARG B 83 LINK CA CA A 2 OD1 ASP A 22 1555 1555 2.59 LINK CA CA A 2 OD2 ASP A 22 1555 1555 2.81 LINK CA CA A 2 O GLY B 21 1555 1555 2.69 LINK CA CA A 2 O HOH B 169 1555 1555 3.13 LINK CA CA A 2 OP2 DG C 3 1555 1555 2.56 LINK CA CA A 2 OP1 DC D 2 1555 1555 2.47 LINK O GLY A 21 CA CA B 3 1555 1555 2.78 LINK OD2 ASP A 22 CA CA D 13 1555 1555 2.55 LINK CA CA B 3 OD1 ASP B 22 1555 1555 2.63 LINK CA CA B 3 OD2 ASP B 22 1555 1555 2.78 LINK CA CA B 3 O HOH B 168 1555 1555 2.27 LINK CA CA B 3 O HOH B 190 1555 1555 2.83 LINK CA CA B 3 OP1 DA C 2 1555 1555 2.42 LINK CA CA B 3 OP2 DG D 3 1555 1555 2.48 LINK OD2 ASP B 22 CA CA D 13 1555 1555 2.63 LINK OP2 DG C 3 CA CA D 13 1555 1555 2.45 LINK O3' DC D 2 CA CA D 13 1555 1555 3.00 LINK OP2 DG D 3 CA CA D 13 1555 1555 2.47 SITE 1 AC1 4 ASP A 22 GLY B 21 DG C 3 DC D 2 SITE 1 AC2 7 GLY A 21 ASP B 22 HOH B 168 HOH B 190 SITE 2 AC2 7 DA C 2 DG D 3 CA D 13 SITE 1 AC3 7 ASP A 22 CA B 3 ASP B 22 DA C 2 SITE 2 AC3 7 DG C 3 DC D 2 DG D 3 CRYST1 42.539 42.611 71.524 96.45 107.04 108.56 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023508 0.007893 0.009235 0.00000 SCALE2 0.000000 0.024756 0.005765 0.00000 SCALE3 0.000000 0.000000 0.015014 0.00000