data_3MJ0 # _entry.id 3MJ0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3MJ0 pdb_00003mj0 10.2210/pdb3mj0/pdb NDB NA0522 ? ? RCSB RCSB058604 ? ? WWPDB D_1000058604 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3MJ0 _pdbx_database_status.recvd_initial_deposition_date 2010-04-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Huang, Y.' 1 'Ding, L.' 2 'Ma, J.' 3 # _citation.id primary _citation.title ;Crystal Structure of drosophila Ago2 PAZ domain in complex with 3'-end 2'-O-methylated RNA ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Huang, Y.' 1 ? primary 'Ding, L.' 2 ? primary 'Ma, J.' 3 ? # _cell.entry_id 3MJ0 _cell.length_a 69.211 _cell.length_b 116.796 _cell.length_c 38.661 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3MJ0 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein argonaute-2' 14157.182 1 ? ? 'UNP residues 601-723, PAZ domain' ? 2 polymer syn ;RNA (5'-R(*CP*GP*UP*UP*AP*CP*GP*CP*(OMU))-3') ; 2822.730 1 ? ? ? ? 3 water nat water 18.015 33 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SSMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHDGKKVTIA SYFHSRNYPLKFPQLHCLNVGSSIKSILLPIELCSIEEGQALNR ; ;SSMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHDGKKVTIA SYFHSRNYPLKFPQLHCLNVGSSIKSILLPIELCSIEEGQALNR ; A ? 2 polyribonucleotide no yes 'CGUUACGC(OMU)' CGUUACGCU B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 SER n 1 3 MET n 1 4 PRO n 1 5 MET n 1 6 ILE n 1 7 GLU n 1 8 TYR n 1 9 LEU n 1 10 GLU n 1 11 ARG n 1 12 PHE n 1 13 SER n 1 14 LEU n 1 15 LYS n 1 16 ALA n 1 17 LYS n 1 18 ILE n 1 19 ASN n 1 20 ASN n 1 21 THR n 1 22 THR n 1 23 ASN n 1 24 LEU n 1 25 ASP n 1 26 TYR n 1 27 SER n 1 28 ARG n 1 29 ARG n 1 30 PHE n 1 31 LEU n 1 32 GLU n 1 33 PRO n 1 34 PHE n 1 35 LEU n 1 36 ARG n 1 37 GLY n 1 38 ILE n 1 39 ASN n 1 40 VAL n 1 41 VAL n 1 42 TYR n 1 43 THR n 1 44 PRO n 1 45 PRO n 1 46 GLN n 1 47 SER n 1 48 PHE n 1 49 GLN n 1 50 SER n 1 51 ALA n 1 52 PRO n 1 53 ARG n 1 54 VAL n 1 55 TYR n 1 56 ARG n 1 57 VAL n 1 58 ASN n 1 59 GLY n 1 60 LEU n 1 61 SER n 1 62 ARG n 1 63 ALA n 1 64 PRO n 1 65 ALA n 1 66 SER n 1 67 SER n 1 68 GLU n 1 69 THR n 1 70 PHE n 1 71 GLU n 1 72 HIS n 1 73 ASP n 1 74 GLY n 1 75 LYS n 1 76 LYS n 1 77 VAL n 1 78 THR n 1 79 ILE n 1 80 ALA n 1 81 SER n 1 82 TYR n 1 83 PHE n 1 84 HIS n 1 85 SER n 1 86 ARG n 1 87 ASN n 1 88 TYR n 1 89 PRO n 1 90 LEU n 1 91 LYS n 1 92 PHE n 1 93 PRO n 1 94 GLN n 1 95 LEU n 1 96 HIS n 1 97 CYS n 1 98 LEU n 1 99 ASN n 1 100 VAL n 1 101 GLY n 1 102 SER n 1 103 SER n 1 104 ILE n 1 105 LYS n 1 106 SER n 1 107 ILE n 1 108 LEU n 1 109 LEU n 1 110 PRO n 1 111 ILE n 1 112 GLU n 1 113 LEU n 1 114 CYS n 1 115 SER n 1 116 ILE n 1 117 GLU n 1 118 GLU n 1 119 GLY n 1 120 GLN n 1 121 ALA n 1 122 LEU n 1 123 ASN n 1 124 ARG n 2 1 C n 2 2 G n 2 3 U n 2 4 U n 2 5 A n 2 6 C n 2 7 G n 2 8 C n 2 9 OMU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Fruit fly' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'AGO2, CG7439' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Drosophila melanogaster' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7227 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)GOLD' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28-SMT3 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This sequence was synthesized.' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP AGO2_DROME Q9VUQ5 1 ;SMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHDGKKVTIAS YFHSRNYPLKFPQLHCLNVGSSIKSILLPIELCSIEEGQALNR ; 601 ? 2 PDB 3MJ0 3MJ0 2 CGUUACGCU 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3MJ0 A 2 ? 124 ? Q9VUQ5 601 ? 723 ? 601 723 2 2 3MJ0 B 1 ? 9 ? 3MJ0 1 ? 9 ? 1 9 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3MJ0 _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9VUQ5 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 600 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 OMU 'RNA linking' n ;O2'-METHYLURIDINE 5'-MONOPHOSPHATE ; ? 'C10 H15 N2 O9 P' 338.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3MJ0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.30 _exptl_crystal.density_percent_sol 46.54 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.8 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;50 mM MES, pH 5.8, 100 mM ammonium sulfate, 10 mM MgCl2, 16% PEG 8000 and 5% glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2008-10-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Rosenbaum-Rock high-resolution double-crystal monochromator. LN2 cooled first crystal, sagittal focusing 2nd crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97929 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97929 # _reflns.entry_id 3MJ0 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30 _reflns.d_resolution_high 2.3 _reflns.number_obs 7212 _reflns.number_all ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.045 _reflns.pdbx_Rsym_value 0.045 _reflns.pdbx_netI_over_sigmaI 35.04 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.8 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.38 _reflns_shell.percent_possible_all 99.1 _reflns_shell.Rmerge_I_obs 0.327 _reflns_shell.pdbx_Rsym_value 0.327 _reflns_shell.meanI_over_sigI_obs 5.578 _reflns_shell.pdbx_redundancy 5.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3MJ0 _refine.ls_number_reflns_obs 7202 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.785 _refine.ls_d_res_high 2.306 _refine.ls_percent_reflns_obs 99.54 _refine.ls_R_factor_obs 0.2244 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2218 _refine.ls_R_factor_R_free 0.2743 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.68 _refine.ls_number_reflns_R_free 337 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 0.4547 _refine.aniso_B[2][2] 0.0596 _refine.aniso_B[3][3] -0.5143 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.350 _refine.solvent_model_param_bsol 49.515 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB entry 1R6Z' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model isotropic _refine.pdbx_stereochemistry_target_values MLHL _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.39 _refine.pdbx_overall_phase_error 30.94 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 951 _refine_hist.pdbx_number_atoms_nucleic_acid 186 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 33 _refine_hist.number_atoms_total 1170 _refine_hist.d_res_high 2.306 _refine_hist.d_res_low 25.785 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.011 ? ? 1182 'X-RAY DIFFRACTION' ? f_angle_d 1.502 ? ? 1609 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 19.807 ? ? 445 'X-RAY DIFFRACTION' ? f_chiral_restr 0.074 ? ? 184 'X-RAY DIFFRACTION' ? f_plane_restr 0.009 ? ? 179 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.3060 2.9047 3364 0.2758 100.00 0.3416 . . 165 . . . . 'X-RAY DIFFRACTION' . 2.9047 25.7864 3501 0.2062 100.00 0.2550 . . 172 . . . . # _struct.entry_id 3MJ0 _struct.title ;Crystal Structure of Drosophia Ago-PAZ domain in complex with 3'-end 2'-O-methylated RNA ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3MJ0 _struct_keywords.pdbx_keywords 'RNA/RNA BINDING PROTEIN' _struct_keywords.text ;Argonaut, PAZ domain, 3'-end 2'-O-methylated ssRNA, RNA-RNA BINDING PROTEIN complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MET A 5 ? SER A 13 ? MET A 604 SER A 612 1 ? 9 HELX_P HELX_P2 2 ASN A 23 ? TYR A 26 ? ASN A 622 TYR A 625 5 ? 4 HELX_P HELX_P3 3 SER A 27 ? ARG A 36 ? SER A 626 ARG A 635 1 ? 10 HELX_P HELX_P4 4 PRO A 45 ? GLN A 49 ? PRO A 644 GLN A 648 5 ? 5 HELX_P HELX_P5 5 ILE A 79 ? SER A 85 ? ILE A 678 SER A 684 1 ? 7 HELX_P HELX_P6 6 PRO A 110 ? GLU A 112 ? PRO A 709 GLU A 711 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B C 8 "O3'" ? ? ? 1_555 B OMU 9 P ? ? B C 8 B OMU 9 1_555 ? ? ? ? ? ? ? 1.629 ? ? hydrog1 hydrog ? ? B C 1 N3 ? ? ? 1_555 B G 7 N1 ? ? B C 1 B G 7 3_654 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B C 1 N4 ? ? ? 1_555 B G 7 O6 ? ? B C 1 B G 7 3_654 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B C 1 O2 ? ? ? 1_555 B G 7 N2 ? ? B C 1 B G 7 3_654 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 6 N3 ? ? B G 2 B C 6 3_654 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 6 O2 ? ? B G 2 B C 6 3_654 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 6 N4 ? ? B G 2 B C 6 3_654 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B U 3 N3 ? ? ? 1_555 B A 5 N1 ? ? B U 3 B A 5 3_654 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B U 3 O4 ? ? ? 1_555 B A 5 N6 ? ? B U 3 B A 5 3_654 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B A 5 N1 ? ? ? 1_555 B U 3 N3 ? ? B A 5 B U 3 3_654 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B A 5 N6 ? ? ? 1_555 B U 3 O4 ? ? B A 5 B U 3 3_654 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B C 6 N3 ? ? ? 1_555 B G 2 N1 ? ? B C 6 B G 2 3_654 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B C 6 N4 ? ? ? 1_555 B G 2 O6 ? ? B C 6 B G 2 3_654 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B C 6 O2 ? ? ? 1_555 B G 2 N2 ? ? B C 6 B G 2 3_654 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B G 7 N1 ? ? ? 1_555 B C 1 N3 ? ? B G 7 B C 1 3_654 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B G 7 N2 ? ? ? 1_555 B C 1 O2 ? ? B G 7 B C 1 3_654 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B G 7 O6 ? ? ? 1_555 B C 1 N4 ? ? B G 7 B C 1 3_654 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 2 ? PRO A 4 ? SER A 601 PRO A 603 A 2 CYS A 114 ? GLU A 117 ? CYS A 713 GLU A 716 A 3 ASN A 39 ? TYR A 42 ? ASN A 638 TYR A 641 A 4 ARG A 53 ? ARG A 56 ? ARG A 652 ARG A 655 B 1 GLY A 59 ? PRO A 64 ? GLY A 658 PRO A 663 B 2 HIS A 96 ? ASN A 99 ? HIS A 695 ASN A 698 B 3 LEU A 108 ? LEU A 109 ? LEU A 707 LEU A 708 C 1 THR A 69 ? GLU A 71 ? THR A 668 GLU A 670 C 2 LYS A 76 ? THR A 78 ? LYS A 675 THR A 677 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N MET A 3 ? N MET A 602 O ILE A 116 ? O ILE A 715 A 2 3 O SER A 115 ? O SER A 714 N VAL A 41 ? N VAL A 640 A 3 4 N TYR A 42 ? N TYR A 641 O ARG A 53 ? O ARG A 652 B 1 2 N SER A 61 ? N SER A 660 O CYS A 97 ? O CYS A 696 B 2 3 N LEU A 98 ? N LEU A 697 O LEU A 109 ? O LEU A 708 C 1 2 N PHE A 70 ? N PHE A 669 O VAL A 77 ? O VAL A 676 # _database_PDB_matrix.entry_id 3MJ0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3MJ0 _atom_sites.fract_transf_matrix[1][1] 0.014449 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008562 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025866 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 600 600 SER SER A . n A 1 2 SER 2 601 601 SER SER A . n A 1 3 MET 3 602 602 MET MET A . n A 1 4 PRO 4 603 603 PRO PRO A . n A 1 5 MET 5 604 604 MET MET A . n A 1 6 ILE 6 605 605 ILE ILE A . n A 1 7 GLU 7 606 606 GLU GLU A . n A 1 8 TYR 8 607 607 TYR TYR A . n A 1 9 LEU 9 608 608 LEU LEU A . n A 1 10 GLU 10 609 609 GLU GLU A . n A 1 11 ARG 11 610 610 ARG ARG A . n A 1 12 PHE 12 611 611 PHE PHE A . n A 1 13 SER 13 612 612 SER SER A . n A 1 14 LEU 14 613 613 LEU LEU A . n A 1 15 LYS 15 614 614 LYS LYS A . n A 1 16 ALA 16 615 615 ALA ALA A . n A 1 17 LYS 17 616 616 LYS LYS A . n A 1 18 ILE 18 617 617 ILE ILE A . n A 1 19 ASN 19 618 618 ASN ASN A . n A 1 20 ASN 20 619 619 ASN ASN A . n A 1 21 THR 21 620 620 THR THR A . n A 1 22 THR 22 621 621 THR THR A . n A 1 23 ASN 23 622 622 ASN ASN A . n A 1 24 LEU 24 623 623 LEU LEU A . n A 1 25 ASP 25 624 624 ASP ASP A . n A 1 26 TYR 26 625 625 TYR TYR A . n A 1 27 SER 27 626 626 SER SER A . n A 1 28 ARG 28 627 627 ARG ARG A . n A 1 29 ARG 29 628 628 ARG ARG A . n A 1 30 PHE 30 629 629 PHE PHE A . n A 1 31 LEU 31 630 630 LEU LEU A . n A 1 32 GLU 32 631 631 GLU GLU A . n A 1 33 PRO 33 632 632 PRO PRO A . n A 1 34 PHE 34 633 633 PHE PHE A . n A 1 35 LEU 35 634 634 LEU LEU A . n A 1 36 ARG 36 635 635 ARG ARG A . n A 1 37 GLY 37 636 636 GLY GLY A . n A 1 38 ILE 38 637 637 ILE ILE A . n A 1 39 ASN 39 638 638 ASN ASN A . n A 1 40 VAL 40 639 639 VAL VAL A . n A 1 41 VAL 41 640 640 VAL VAL A . n A 1 42 TYR 42 641 641 TYR TYR A . n A 1 43 THR 43 642 642 THR THR A . n A 1 44 PRO 44 643 643 PRO PRO A . n A 1 45 PRO 45 644 644 PRO PRO A . n A 1 46 GLN 46 645 645 GLN GLN A . n A 1 47 SER 47 646 646 SER SER A . n A 1 48 PHE 48 647 647 PHE PHE A . n A 1 49 GLN 49 648 648 GLN GLN A . n A 1 50 SER 50 649 649 SER SER A . n A 1 51 ALA 51 650 650 ALA ALA A . n A 1 52 PRO 52 651 651 PRO PRO A . n A 1 53 ARG 53 652 652 ARG ARG A . n A 1 54 VAL 54 653 653 VAL VAL A . n A 1 55 TYR 55 654 654 TYR TYR A . n A 1 56 ARG 56 655 655 ARG ARG A . n A 1 57 VAL 57 656 656 VAL VAL A . n A 1 58 ASN 58 657 657 ASN ASN A . n A 1 59 GLY 59 658 658 GLY GLY A . n A 1 60 LEU 60 659 659 LEU LEU A . n A 1 61 SER 61 660 660 SER SER A . n A 1 62 ARG 62 661 661 ARG ARG A . n A 1 63 ALA 63 662 662 ALA ALA A . n A 1 64 PRO 64 663 663 PRO PRO A . n A 1 65 ALA 65 664 664 ALA ALA A . n A 1 66 SER 66 665 665 SER SER A . n A 1 67 SER 67 666 666 SER SER A . n A 1 68 GLU 68 667 667 GLU GLU A . n A 1 69 THR 69 668 668 THR THR A . n A 1 70 PHE 70 669 669 PHE PHE A . n A 1 71 GLU 71 670 670 GLU GLU A . n A 1 72 HIS 72 671 671 HIS HIS A . n A 1 73 ASP 73 672 672 ASP ASP A . n A 1 74 GLY 74 673 673 GLY GLY A . n A 1 75 LYS 75 674 674 LYS LYS A . n A 1 76 LYS 76 675 675 LYS LYS A . n A 1 77 VAL 77 676 676 VAL VAL A . n A 1 78 THR 78 677 677 THR THR A . n A 1 79 ILE 79 678 678 ILE ILE A . n A 1 80 ALA 80 679 679 ALA ALA A . n A 1 81 SER 81 680 680 SER SER A . n A 1 82 TYR 82 681 681 TYR TYR A . n A 1 83 PHE 83 682 682 PHE PHE A . n A 1 84 HIS 84 683 683 HIS HIS A . n A 1 85 SER 85 684 684 SER SER A . n A 1 86 ARG 86 685 685 ARG ARG A . n A 1 87 ASN 87 686 686 ASN ASN A . n A 1 88 TYR 88 687 687 TYR TYR A . n A 1 89 PRO 89 688 688 PRO PRO A . n A 1 90 LEU 90 689 689 LEU LEU A . n A 1 91 LYS 91 690 690 LYS LYS A . n A 1 92 PHE 92 691 691 PHE PHE A . n A 1 93 PRO 93 692 692 PRO PRO A . n A 1 94 GLN 94 693 693 GLN GLN A . n A 1 95 LEU 95 694 694 LEU LEU A . n A 1 96 HIS 96 695 695 HIS HIS A . n A 1 97 CYS 97 696 696 CYS CYS A . n A 1 98 LEU 98 697 697 LEU LEU A . n A 1 99 ASN 99 698 698 ASN ASN A . n A 1 100 VAL 100 699 699 VAL VAL A . n A 1 101 GLY 101 700 700 GLY GLY A . n A 1 102 SER 102 701 701 SER SER A . n A 1 103 SER 103 702 702 SER SER A . n A 1 104 ILE 104 703 703 ILE ILE A . n A 1 105 LYS 105 704 704 LYS LYS A . n A 1 106 SER 106 705 705 SER SER A . n A 1 107 ILE 107 706 706 ILE ILE A . n A 1 108 LEU 108 707 707 LEU LEU A . n A 1 109 LEU 109 708 708 LEU LEU A . n A 1 110 PRO 110 709 709 PRO PRO A . n A 1 111 ILE 111 710 710 ILE ILE A . n A 1 112 GLU 112 711 711 GLU GLU A . n A 1 113 LEU 113 712 712 LEU LEU A . n A 1 114 CYS 114 713 713 CYS CYS A . n A 1 115 SER 115 714 714 SER SER A . n A 1 116 ILE 116 715 715 ILE ILE A . n A 1 117 GLU 117 716 716 GLU GLU A . n A 1 118 GLU 118 717 717 GLU GLU A . n A 1 119 GLY 119 718 ? ? ? A . n A 1 120 GLN 120 719 ? ? ? A . n A 1 121 ALA 121 720 ? ? ? A . n A 1 122 LEU 122 721 ? ? ? A . n A 1 123 ASN 123 722 ? ? ? A . n A 1 124 ARG 124 723 ? ? ? A . n B 2 1 C 1 1 1 C C B . n B 2 2 G 2 2 2 G G B . n B 2 3 U 3 3 3 U U B . n B 2 4 U 4 4 4 U U B . n B 2 5 A 5 5 5 A A B . n B 2 6 C 6 6 6 C C B . n B 2 7 G 7 7 7 G G B . n B 2 8 C 8 8 8 C C B . n B 2 9 OMU 9 9 9 OMU OMU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 3 3 HOH HOH A . C 3 HOH 2 5 5 HOH HOH A . C 3 HOH 3 6 6 HOH HOH A . C 3 HOH 4 7 7 HOH HOH A . C 3 HOH 5 8 8 HOH HOH A . C 3 HOH 6 9 9 HOH HOH A . C 3 HOH 7 10 10 HOH HOH A . C 3 HOH 8 11 11 HOH HOH A . C 3 HOH 9 13 13 HOH HOH A . C 3 HOH 10 15 15 HOH HOH A . C 3 HOH 11 16 16 HOH HOH A . C 3 HOH 12 17 17 HOH HOH A . C 3 HOH 13 18 18 HOH HOH A . C 3 HOH 14 19 19 HOH HOH A . C 3 HOH 15 21 21 HOH HOH A . C 3 HOH 16 22 22 HOH HOH A . C 3 HOH 17 24 24 HOH HOH A . C 3 HOH 18 25 25 HOH HOH A . C 3 HOH 19 26 26 HOH HOH A . C 3 HOH 20 30 30 HOH HOH A . C 3 HOH 21 32 32 HOH HOH A . C 3 HOH 22 33 33 HOH HOH A . D 3 HOH 1 10 1 HOH HOH B . D 3 HOH 2 11 2 HOH HOH B . D 3 HOH 3 12 12 HOH HOH B . D 3 HOH 4 13 4 HOH HOH B . D 3 HOH 5 14 14 HOH HOH B . D 3 HOH 6 20 20 HOH HOH B . D 3 HOH 7 23 23 HOH HOH B . D 3 HOH 8 27 27 HOH HOH B . D 3 HOH 9 28 28 HOH HOH B . D 3 HOH 10 29 29 HOH HOH B . D 3 HOH 11 31 31 HOH HOH B . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id OMU _pdbx_struct_mod_residue.label_seq_id 9 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id OMU _pdbx_struct_mod_residue.auth_seq_id 9 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id U _pdbx_struct_mod_residue.details ;O2'-METHYLURIDINE 5'-MONOPHOSPHATE ; # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1130 ? 1 MORE -4 ? 1 'SSA (A^2)' 8020 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-05-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHENIX refinement '(phenix.refine: 1.5_2)' ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG A SER 701 ? ? O A HOH 25 ? ? 1.81 2 1 O A HOH 19 ? ? O A HOH 21 ? ? 1.96 3 1 O A ARG 655 ? ? O A HOH 5 ? ? 2.06 4 1 NE2 A GLN 645 ? ? O A HOH 22 ? ? 2.18 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 30 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 28 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 8_455 _pdbx_validate_symm_contact.dist 2.11 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O5'" _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 7 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C5'" _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 7 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.356 _pdbx_validate_rmsd_bond.bond_target_value 1.420 _pdbx_validate_rmsd_bond.bond_deviation -0.064 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.009 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C5'" _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 U _pdbx_validate_rmsd_angle.auth_seq_id_1 4 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C4'" _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 U _pdbx_validate_rmsd_angle.auth_seq_id_2 4 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "C3'" _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 U _pdbx_validate_rmsd_angle.auth_seq_id_3 4 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 106.64 _pdbx_validate_rmsd_angle.angle_target_value 115.20 _pdbx_validate_rmsd_angle.angle_deviation -8.56 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.40 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 619 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -64.51 _pdbx_validate_torsion.psi 6.13 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 718 ? A GLY 119 2 1 Y 1 A GLN 719 ? A GLN 120 3 1 Y 1 A ALA 720 ? A ALA 121 4 1 Y 1 A LEU 721 ? A LEU 122 5 1 Y 1 A ASN 722 ? A ASN 123 6 1 Y 1 A ARG 723 ? A ARG 124 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 G OP3 O N N 160 G P P N N 161 G OP1 O N N 162 G OP2 O N N 163 G "O5'" O N N 164 G "C5'" C N N 165 G "C4'" C N R 166 G "O4'" O N N 167 G "C3'" C N S 168 G "O3'" O N N 169 G "C2'" C N R 170 G "O2'" O N N 171 G "C1'" C N R 172 G N9 N Y N 173 G C8 C Y N 174 G N7 N Y N 175 G C5 C Y N 176 G C6 C N N 177 G O6 O N N 178 G N1 N N N 179 G C2 C N N 180 G N2 N N N 181 G N3 N N N 182 G C4 C Y N 183 G HOP3 H N N 184 G HOP2 H N N 185 G "H5'" H N N 186 G "H5''" H N N 187 G "H4'" H N N 188 G "H3'" H N N 189 G "HO3'" H N N 190 G "H2'" H N N 191 G "HO2'" H N N 192 G "H1'" H N N 193 G H8 H N N 194 G H1 H N N 195 G H21 H N N 196 G H22 H N N 197 GLN N N N N 198 GLN CA C N S 199 GLN C C N N 200 GLN O O N N 201 GLN CB C N N 202 GLN CG C N N 203 GLN CD C N N 204 GLN OE1 O N N 205 GLN NE2 N N N 206 GLN OXT O N N 207 GLN H H N N 208 GLN H2 H N N 209 GLN HA H N N 210 GLN HB2 H N N 211 GLN HB3 H N N 212 GLN HG2 H N N 213 GLN HG3 H N N 214 GLN HE21 H N N 215 GLN HE22 H N N 216 GLN HXT H N N 217 GLU N N N N 218 GLU CA C N S 219 GLU C C N N 220 GLU O O N N 221 GLU CB C N N 222 GLU CG C N N 223 GLU CD C N N 224 GLU OE1 O N N 225 GLU OE2 O N N 226 GLU OXT O N N 227 GLU H H N N 228 GLU H2 H N N 229 GLU HA H N N 230 GLU HB2 H N N 231 GLU HB3 H N N 232 GLU HG2 H N N 233 GLU HG3 H N N 234 GLU HE2 H N N 235 GLU HXT H N N 236 GLY N N N N 237 GLY CA C N N 238 GLY C C N N 239 GLY O O N N 240 GLY OXT O N N 241 GLY H H N N 242 GLY H2 H N N 243 GLY HA2 H N N 244 GLY HA3 H N N 245 GLY HXT H N N 246 HIS N N N N 247 HIS CA C N S 248 HIS C C N N 249 HIS O O N N 250 HIS CB C N N 251 HIS CG C Y N 252 HIS ND1 N Y N 253 HIS CD2 C Y N 254 HIS CE1 C Y N 255 HIS NE2 N Y N 256 HIS OXT O N N 257 HIS H H N N 258 HIS H2 H N N 259 HIS HA H N N 260 HIS HB2 H N N 261 HIS HB3 H N N 262 HIS HD1 H N N 263 HIS HD2 H N N 264 HIS HE1 H N N 265 HIS HE2 H N N 266 HIS HXT H N N 267 HOH O O N N 268 HOH H1 H N N 269 HOH H2 H N N 270 ILE N N N N 271 ILE CA C N S 272 ILE C C N N 273 ILE O O N N 274 ILE CB C N S 275 ILE CG1 C N N 276 ILE CG2 C N N 277 ILE CD1 C N N 278 ILE OXT O N N 279 ILE H H N N 280 ILE H2 H N N 281 ILE HA H N N 282 ILE HB H N N 283 ILE HG12 H N N 284 ILE HG13 H N N 285 ILE HG21 H N N 286 ILE HG22 H N N 287 ILE HG23 H N N 288 ILE HD11 H N N 289 ILE HD12 H N N 290 ILE HD13 H N N 291 ILE HXT H N N 292 LEU N N N N 293 LEU CA C N S 294 LEU C C N N 295 LEU O O N N 296 LEU CB C N N 297 LEU CG C N N 298 LEU CD1 C N N 299 LEU CD2 C N N 300 LEU OXT O N N 301 LEU H H N N 302 LEU H2 H N N 303 LEU HA H N N 304 LEU HB2 H N N 305 LEU HB3 H N N 306 LEU HG H N N 307 LEU HD11 H N N 308 LEU HD12 H N N 309 LEU HD13 H N N 310 LEU HD21 H N N 311 LEU HD22 H N N 312 LEU HD23 H N N 313 LEU HXT H N N 314 LYS N N N N 315 LYS CA C N S 316 LYS C C N N 317 LYS O O N N 318 LYS CB C N N 319 LYS CG C N N 320 LYS CD C N N 321 LYS CE C N N 322 LYS NZ N N N 323 LYS OXT O N N 324 LYS H H N N 325 LYS H2 H N N 326 LYS HA H N N 327 LYS HB2 H N N 328 LYS HB3 H N N 329 LYS HG2 H N N 330 LYS HG3 H N N 331 LYS HD2 H N N 332 LYS HD3 H N N 333 LYS HE2 H N N 334 LYS HE3 H N N 335 LYS HZ1 H N N 336 LYS HZ2 H N N 337 LYS HZ3 H N N 338 LYS HXT H N N 339 MET N N N N 340 MET CA C N S 341 MET C C N N 342 MET O O N N 343 MET CB C N N 344 MET CG C N N 345 MET SD S N N 346 MET CE C N N 347 MET OXT O N N 348 MET H H N N 349 MET H2 H N N 350 MET HA H N N 351 MET HB2 H N N 352 MET HB3 H N N 353 MET HG2 H N N 354 MET HG3 H N N 355 MET HE1 H N N 356 MET HE2 H N N 357 MET HE3 H N N 358 MET HXT H N N 359 OMU N1 N N N 360 OMU C2 C N N 361 OMU N3 N N N 362 OMU C4 C N N 363 OMU C5 C N N 364 OMU C6 C N N 365 OMU O2 O N N 366 OMU O4 O N N 367 OMU "C1'" C N R 368 OMU "C2'" C N R 369 OMU "O2'" O N N 370 OMU CM2 C N N 371 OMU "C3'" C N R 372 OMU "C4'" C N R 373 OMU "O3'" O N N 374 OMU "O4'" O N N 375 OMU "C5'" C N N 376 OMU "O5'" O N N 377 OMU P P N N 378 OMU OP1 O N N 379 OMU OP2 O N N 380 OMU OP3 O N N 381 OMU HN3 H N N 382 OMU H5 H N N 383 OMU H6 H N N 384 OMU "H1'" H N N 385 OMU "H2'" H N N 386 OMU HM21 H N N 387 OMU HM22 H N N 388 OMU HM23 H N N 389 OMU "H3'" H N N 390 OMU "H4'" H N N 391 OMU "HO3'" H N N 392 OMU "H5'" H N N 393 OMU "H5''" H N N 394 OMU HOP2 H N N 395 OMU HOP3 H N N 396 PHE N N N N 397 PHE CA C N S 398 PHE C C N N 399 PHE O O N N 400 PHE CB C N N 401 PHE CG C Y N 402 PHE CD1 C Y N 403 PHE CD2 C Y N 404 PHE CE1 C Y N 405 PHE CE2 C Y N 406 PHE CZ C Y N 407 PHE OXT O N N 408 PHE H H N N 409 PHE H2 H N N 410 PHE HA H N N 411 PHE HB2 H N N 412 PHE HB3 H N N 413 PHE HD1 H N N 414 PHE HD2 H N N 415 PHE HE1 H N N 416 PHE HE2 H N N 417 PHE HZ H N N 418 PHE HXT H N N 419 PRO N N N N 420 PRO CA C N S 421 PRO C C N N 422 PRO O O N N 423 PRO CB C N N 424 PRO CG C N N 425 PRO CD C N N 426 PRO OXT O N N 427 PRO H H N N 428 PRO HA H N N 429 PRO HB2 H N N 430 PRO HB3 H N N 431 PRO HG2 H N N 432 PRO HG3 H N N 433 PRO HD2 H N N 434 PRO HD3 H N N 435 PRO HXT H N N 436 SER N N N N 437 SER CA C N S 438 SER C C N N 439 SER O O N N 440 SER CB C N N 441 SER OG O N N 442 SER OXT O N N 443 SER H H N N 444 SER H2 H N N 445 SER HA H N N 446 SER HB2 H N N 447 SER HB3 H N N 448 SER HG H N N 449 SER HXT H N N 450 THR N N N N 451 THR CA C N S 452 THR C C N N 453 THR O O N N 454 THR CB C N R 455 THR OG1 O N N 456 THR CG2 C N N 457 THR OXT O N N 458 THR H H N N 459 THR H2 H N N 460 THR HA H N N 461 THR HB H N N 462 THR HG1 H N N 463 THR HG21 H N N 464 THR HG22 H N N 465 THR HG23 H N N 466 THR HXT H N N 467 TYR N N N N 468 TYR CA C N S 469 TYR C C N N 470 TYR O O N N 471 TYR CB C N N 472 TYR CG C Y N 473 TYR CD1 C Y N 474 TYR CD2 C Y N 475 TYR CE1 C Y N 476 TYR CE2 C Y N 477 TYR CZ C Y N 478 TYR OH O N N 479 TYR OXT O N N 480 TYR H H N N 481 TYR H2 H N N 482 TYR HA H N N 483 TYR HB2 H N N 484 TYR HB3 H N N 485 TYR HD1 H N N 486 TYR HD2 H N N 487 TYR HE1 H N N 488 TYR HE2 H N N 489 TYR HH H N N 490 TYR HXT H N N 491 U OP3 O N N 492 U P P N N 493 U OP1 O N N 494 U OP2 O N N 495 U "O5'" O N N 496 U "C5'" C N N 497 U "C4'" C N R 498 U "O4'" O N N 499 U "C3'" C N S 500 U "O3'" O N N 501 U "C2'" C N R 502 U "O2'" O N N 503 U "C1'" C N R 504 U N1 N N N 505 U C2 C N N 506 U O2 O N N 507 U N3 N N N 508 U C4 C N N 509 U O4 O N N 510 U C5 C N N 511 U C6 C N N 512 U HOP3 H N N 513 U HOP2 H N N 514 U "H5'" H N N 515 U "H5''" H N N 516 U "H4'" H N N 517 U "H3'" H N N 518 U "HO3'" H N N 519 U "H2'" H N N 520 U "HO2'" H N N 521 U "H1'" H N N 522 U H3 H N N 523 U H5 H N N 524 U H6 H N N 525 VAL N N N N 526 VAL CA C N S 527 VAL C C N N 528 VAL O O N N 529 VAL CB C N N 530 VAL CG1 C N N 531 VAL CG2 C N N 532 VAL OXT O N N 533 VAL H H N N 534 VAL H2 H N N 535 VAL HA H N N 536 VAL HB H N N 537 VAL HG11 H N N 538 VAL HG12 H N N 539 VAL HG13 H N N 540 VAL HG21 H N N 541 VAL HG22 H N N 542 VAL HG23 H N N 543 VAL HXT H N N 544 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GLN N CA sing N N 198 GLN N H sing N N 199 GLN N H2 sing N N 200 GLN CA C sing N N 201 GLN CA CB sing N N 202 GLN CA HA sing N N 203 GLN C O doub N N 204 GLN C OXT sing N N 205 GLN CB CG sing N N 206 GLN CB HB2 sing N N 207 GLN CB HB3 sing N N 208 GLN CG CD sing N N 209 GLN CG HG2 sing N N 210 GLN CG HG3 sing N N 211 GLN CD OE1 doub N N 212 GLN CD NE2 sing N N 213 GLN NE2 HE21 sing N N 214 GLN NE2 HE22 sing N N 215 GLN OXT HXT sing N N 216 GLU N CA sing N N 217 GLU N H sing N N 218 GLU N H2 sing N N 219 GLU CA C sing N N 220 GLU CA CB sing N N 221 GLU CA HA sing N N 222 GLU C O doub N N 223 GLU C OXT sing N N 224 GLU CB CG sing N N 225 GLU CB HB2 sing N N 226 GLU CB HB3 sing N N 227 GLU CG CD sing N N 228 GLU CG HG2 sing N N 229 GLU CG HG3 sing N N 230 GLU CD OE1 doub N N 231 GLU CD OE2 sing N N 232 GLU OE2 HE2 sing N N 233 GLU OXT HXT sing N N 234 GLY N CA sing N N 235 GLY N H sing N N 236 GLY N H2 sing N N 237 GLY CA C sing N N 238 GLY CA HA2 sing N N 239 GLY CA HA3 sing N N 240 GLY C O doub N N 241 GLY C OXT sing N N 242 GLY OXT HXT sing N N 243 HIS N CA sing N N 244 HIS N H sing N N 245 HIS N H2 sing N N 246 HIS CA C sing N N 247 HIS CA CB sing N N 248 HIS CA HA sing N N 249 HIS C O doub N N 250 HIS C OXT sing N N 251 HIS CB CG sing N N 252 HIS CB HB2 sing N N 253 HIS CB HB3 sing N N 254 HIS CG ND1 sing Y N 255 HIS CG CD2 doub Y N 256 HIS ND1 CE1 doub Y N 257 HIS ND1 HD1 sing N N 258 HIS CD2 NE2 sing Y N 259 HIS CD2 HD2 sing N N 260 HIS CE1 NE2 sing Y N 261 HIS CE1 HE1 sing N N 262 HIS NE2 HE2 sing N N 263 HIS OXT HXT sing N N 264 HOH O H1 sing N N 265 HOH O H2 sing N N 266 ILE N CA sing N N 267 ILE N H sing N N 268 ILE N H2 sing N N 269 ILE CA C sing N N 270 ILE CA CB sing N N 271 ILE CA HA sing N N 272 ILE C O doub N N 273 ILE C OXT sing N N 274 ILE CB CG1 sing N N 275 ILE CB CG2 sing N N 276 ILE CB HB sing N N 277 ILE CG1 CD1 sing N N 278 ILE CG1 HG12 sing N N 279 ILE CG1 HG13 sing N N 280 ILE CG2 HG21 sing N N 281 ILE CG2 HG22 sing N N 282 ILE CG2 HG23 sing N N 283 ILE CD1 HD11 sing N N 284 ILE CD1 HD12 sing N N 285 ILE CD1 HD13 sing N N 286 ILE OXT HXT sing N N 287 LEU N CA sing N N 288 LEU N H sing N N 289 LEU N H2 sing N N 290 LEU CA C sing N N 291 LEU CA CB sing N N 292 LEU CA HA sing N N 293 LEU C O doub N N 294 LEU C OXT sing N N 295 LEU CB CG sing N N 296 LEU CB HB2 sing N N 297 LEU CB HB3 sing N N 298 LEU CG CD1 sing N N 299 LEU CG CD2 sing N N 300 LEU CG HG sing N N 301 LEU CD1 HD11 sing N N 302 LEU CD1 HD12 sing N N 303 LEU CD1 HD13 sing N N 304 LEU CD2 HD21 sing N N 305 LEU CD2 HD22 sing N N 306 LEU CD2 HD23 sing N N 307 LEU OXT HXT sing N N 308 LYS N CA sing N N 309 LYS N H sing N N 310 LYS N H2 sing N N 311 LYS CA C sing N N 312 LYS CA CB sing N N 313 LYS CA HA sing N N 314 LYS C O doub N N 315 LYS C OXT sing N N 316 LYS CB CG sing N N 317 LYS CB HB2 sing N N 318 LYS CB HB3 sing N N 319 LYS CG CD sing N N 320 LYS CG HG2 sing N N 321 LYS CG HG3 sing N N 322 LYS CD CE sing N N 323 LYS CD HD2 sing N N 324 LYS CD HD3 sing N N 325 LYS CE NZ sing N N 326 LYS CE HE2 sing N N 327 LYS CE HE3 sing N N 328 LYS NZ HZ1 sing N N 329 LYS NZ HZ2 sing N N 330 LYS NZ HZ3 sing N N 331 LYS OXT HXT sing N N 332 MET N CA sing N N 333 MET N H sing N N 334 MET N H2 sing N N 335 MET CA C sing N N 336 MET CA CB sing N N 337 MET CA HA sing N N 338 MET C O doub N N 339 MET C OXT sing N N 340 MET CB CG sing N N 341 MET CB HB2 sing N N 342 MET CB HB3 sing N N 343 MET CG SD sing N N 344 MET CG HG2 sing N N 345 MET CG HG3 sing N N 346 MET SD CE sing N N 347 MET CE HE1 sing N N 348 MET CE HE2 sing N N 349 MET CE HE3 sing N N 350 MET OXT HXT sing N N 351 OMU N1 C2 sing N N 352 OMU N1 C6 sing N N 353 OMU N1 "C1'" sing N N 354 OMU C2 N3 sing N N 355 OMU C2 O2 doub N N 356 OMU N3 C4 sing N N 357 OMU N3 HN3 sing N N 358 OMU C4 C5 sing N N 359 OMU C4 O4 doub N N 360 OMU C5 C6 doub N N 361 OMU C5 H5 sing N N 362 OMU C6 H6 sing N N 363 OMU "C1'" "C2'" sing N N 364 OMU "C1'" "O4'" sing N N 365 OMU "C1'" "H1'" sing N N 366 OMU "C2'" "O2'" sing N N 367 OMU "C2'" "C3'" sing N N 368 OMU "C2'" "H2'" sing N N 369 OMU "O2'" CM2 sing N N 370 OMU CM2 HM21 sing N N 371 OMU CM2 HM22 sing N N 372 OMU CM2 HM23 sing N N 373 OMU "C3'" "C4'" sing N N 374 OMU "C3'" "O3'" sing N N 375 OMU "C3'" "H3'" sing N N 376 OMU "C4'" "O4'" sing N N 377 OMU "C4'" "C5'" sing N N 378 OMU "C4'" "H4'" sing N N 379 OMU "O3'" "HO3'" sing N N 380 OMU "C5'" "O5'" sing N N 381 OMU "C5'" "H5'" sing N N 382 OMU "C5'" "H5''" sing N N 383 OMU "O5'" P sing N N 384 OMU P OP1 doub N N 385 OMU P OP2 sing N N 386 OMU P OP3 sing N N 387 OMU OP2 HOP2 sing N N 388 OMU OP3 HOP3 sing N N 389 PHE N CA sing N N 390 PHE N H sing N N 391 PHE N H2 sing N N 392 PHE CA C sing N N 393 PHE CA CB sing N N 394 PHE CA HA sing N N 395 PHE C O doub N N 396 PHE C OXT sing N N 397 PHE CB CG sing N N 398 PHE CB HB2 sing N N 399 PHE CB HB3 sing N N 400 PHE CG CD1 doub Y N 401 PHE CG CD2 sing Y N 402 PHE CD1 CE1 sing Y N 403 PHE CD1 HD1 sing N N 404 PHE CD2 CE2 doub Y N 405 PHE CD2 HD2 sing N N 406 PHE CE1 CZ doub Y N 407 PHE CE1 HE1 sing N N 408 PHE CE2 CZ sing Y N 409 PHE CE2 HE2 sing N N 410 PHE CZ HZ sing N N 411 PHE OXT HXT sing N N 412 PRO N CA sing N N 413 PRO N CD sing N N 414 PRO N H sing N N 415 PRO CA C sing N N 416 PRO CA CB sing N N 417 PRO CA HA sing N N 418 PRO C O doub N N 419 PRO C OXT sing N N 420 PRO CB CG sing N N 421 PRO CB HB2 sing N N 422 PRO CB HB3 sing N N 423 PRO CG CD sing N N 424 PRO CG HG2 sing N N 425 PRO CG HG3 sing N N 426 PRO CD HD2 sing N N 427 PRO CD HD3 sing N N 428 PRO OXT HXT sing N N 429 SER N CA sing N N 430 SER N H sing N N 431 SER N H2 sing N N 432 SER CA C sing N N 433 SER CA CB sing N N 434 SER CA HA sing N N 435 SER C O doub N N 436 SER C OXT sing N N 437 SER CB OG sing N N 438 SER CB HB2 sing N N 439 SER CB HB3 sing N N 440 SER OG HG sing N N 441 SER OXT HXT sing N N 442 THR N CA sing N N 443 THR N H sing N N 444 THR N H2 sing N N 445 THR CA C sing N N 446 THR CA CB sing N N 447 THR CA HA sing N N 448 THR C O doub N N 449 THR C OXT sing N N 450 THR CB OG1 sing N N 451 THR CB CG2 sing N N 452 THR CB HB sing N N 453 THR OG1 HG1 sing N N 454 THR CG2 HG21 sing N N 455 THR CG2 HG22 sing N N 456 THR CG2 HG23 sing N N 457 THR OXT HXT sing N N 458 TYR N CA sing N N 459 TYR N H sing N N 460 TYR N H2 sing N N 461 TYR CA C sing N N 462 TYR CA CB sing N N 463 TYR CA HA sing N N 464 TYR C O doub N N 465 TYR C OXT sing N N 466 TYR CB CG sing N N 467 TYR CB HB2 sing N N 468 TYR CB HB3 sing N N 469 TYR CG CD1 doub Y N 470 TYR CG CD2 sing Y N 471 TYR CD1 CE1 sing Y N 472 TYR CD1 HD1 sing N N 473 TYR CD2 CE2 doub Y N 474 TYR CD2 HD2 sing N N 475 TYR CE1 CZ doub Y N 476 TYR CE1 HE1 sing N N 477 TYR CE2 CZ sing Y N 478 TYR CE2 HE2 sing N N 479 TYR CZ OH sing N N 480 TYR OH HH sing N N 481 TYR OXT HXT sing N N 482 U OP3 P sing N N 483 U OP3 HOP3 sing N N 484 U P OP1 doub N N 485 U P OP2 sing N N 486 U P "O5'" sing N N 487 U OP2 HOP2 sing N N 488 U "O5'" "C5'" sing N N 489 U "C5'" "C4'" sing N N 490 U "C5'" "H5'" sing N N 491 U "C5'" "H5''" sing N N 492 U "C4'" "O4'" sing N N 493 U "C4'" "C3'" sing N N 494 U "C4'" "H4'" sing N N 495 U "O4'" "C1'" sing N N 496 U "C3'" "O3'" sing N N 497 U "C3'" "C2'" sing N N 498 U "C3'" "H3'" sing N N 499 U "O3'" "HO3'" sing N N 500 U "C2'" "O2'" sing N N 501 U "C2'" "C1'" sing N N 502 U "C2'" "H2'" sing N N 503 U "O2'" "HO2'" sing N N 504 U "C1'" N1 sing N N 505 U "C1'" "H1'" sing N N 506 U N1 C2 sing N N 507 U N1 C6 sing N N 508 U C2 O2 doub N N 509 U C2 N3 sing N N 510 U N3 C4 sing N N 511 U N3 H3 sing N N 512 U C4 O4 doub N N 513 U C4 C5 sing N N 514 U C5 C6 doub N N 515 U C5 H5 sing N N 516 U C6 H6 sing N N 517 VAL N CA sing N N 518 VAL N H sing N N 519 VAL N H2 sing N N 520 VAL CA C sing N N 521 VAL CA CB sing N N 522 VAL CA HA sing N N 523 VAL C O doub N N 524 VAL C OXT sing N N 525 VAL CB CG1 sing N N 526 VAL CB CG2 sing N N 527 VAL CB HB sing N N 528 VAL CG1 HG11 sing N N 529 VAL CG1 HG12 sing N N 530 VAL CG1 HG13 sing N N 531 VAL CG2 HG21 sing N N 532 VAL CG2 HG22 sing N N 533 VAL CG2 HG23 sing N N 534 VAL OXT HXT sing N N 535 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3MJ0 'double helix' 3MJ0 'a-form double helix' 3MJ0 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B C 1 1_555 B G 7 3_654 0.226 -0.078 0.202 6.468 -22.781 4.327 1 B_C1:G7_B B 1 ? B 7 ? 19 1 1 B G 2 1_555 B C 6 3_654 -0.192 -0.222 -0.031 -8.929 -15.491 3.897 2 B_G2:C6_B B 2 ? B 6 ? 19 1 1 B U 3 1_555 B A 5 3_654 0.170 -0.161 0.151 -2.461 -7.656 2.825 3 B_U3:A5_B B 3 ? B 5 ? 20 1 1 B A 5 1_555 B U 3 3_654 -0.170 -0.161 0.151 2.461 -7.656 2.825 4 B_A5:U3_B B 5 ? B 3 ? 20 1 1 B C 6 1_555 B G 2 3_654 0.192 -0.222 -0.031 8.929 -15.491 3.897 5 B_C6:G2_B B 6 ? B 2 ? 19 1 1 B G 7 1_555 B C 1 3_654 -0.226 -0.078 0.202 -6.468 -22.781 4.327 6 B_G7:C1_B B 7 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B C 1 1_555 B G 7 3_654 B G 2 1_555 B C 6 3_654 -0.572 -1.848 3.498 -1.506 12.490 29.230 -5.582 0.778 2.541 23.427 2.825 31.768 1 BB_C1G2:C6G7_BB B 1 ? B 7 ? B 2 ? B 6 ? 1 B G 2 1_555 B C 6 3_654 B U 3 1_555 B A 5 3_654 -0.523 -1.368 3.028 -4.033 6.053 32.782 -3.262 0.310 2.781 10.564 7.038 33.558 2 BB_G2U3:A5C6_BB B 2 ? B 6 ? B 3 ? B 5 ? 1 B U 3 1_555 B A 5 3_654 B A 5 1_555 B U 3 3_654 0.000 -2.326 6.135 0.000 6.223 64.073 -2.674 0.000 5.911 5.851 0.000 64.342 3 BB_U3A5:U3A5_BB B 3 ? B 5 ? B 5 ? B 3 ? 1 B A 5 1_555 B U 3 3_654 B C 6 1_555 B G 2 3_654 0.523 -1.368 3.028 4.033 6.053 32.782 -3.262 -0.310 2.781 10.564 -7.038 33.558 4 BB_A5C6:G2U3_BB B 5 ? B 3 ? B 6 ? B 2 ? 1 B C 6 1_555 B G 2 3_654 B G 7 1_555 B C 1 3_654 0.572 -1.848 3.498 1.506 12.489 29.230 -5.582 -0.778 2.541 23.427 -2.825 31.768 5 BB_C6G7:C1G2_BB B 6 ? B 2 ? B 7 ? B 1 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1R6Z _pdbx_initial_refinement_model.details 'PDB entry 1R6Z' #