HEADER PROTEIN TRANSPORT 14-APR-10 3MK4 TITLE X-RAY STRUCTURE OF HUMAN PEX3 IN COMPLEX WITH A PEX19 DERIVED PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOMAL BIOGENESIS FACTOR 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CYTOSOLIC DOMAIN, UNP RESIDUES 41-373; COMPND 5 SYNONYM: PEROXIN-3, PEROXISOMAL ASSEMBLY PROTEIN PEX3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PEROXISOMAL BIOGENESIS FACTOR 19; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: PEX19PEP, UNP RESIDUES 14-33; COMPND 12 SYNONYM: PEROXIN-19, PEROXISOMAL FARNESYLATED PROTEIN, 33 KDA COMPND 13 HOUSEKEEPING PROTEIN; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PEX3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET32A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SYNTHESIZED PEPTIDE KEYWDS MEMBRANE, PEROXISOME, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR F.SCHMIDT,N.TREIBER,G.DODT,T.STEHLE REVDAT 5 03-APR-24 3MK4 1 REMARK REVDAT 4 20-MAR-24 3MK4 1 SEQADV REVDAT 3 19-FEB-14 3MK4 1 JRNL REVDAT 2 16-OCT-13 3MK4 1 REMARK VERSN REVDAT 1 30-JUN-10 3MK4 0 JRNL AUTH F.SCHMIDT,N.TREIBER,G.ZOCHER,S.BJELIC,M.O.STEINMETZ, JRNL AUTH 2 H.KALBACHER,T.STEHLE,G.DODT JRNL TITL INSIGHTS INTO PEROXISOME FUNCTION FROM THE STRUCTURE OF PEX3 JRNL TITL 2 IN COMPLEX WITH A SOLUBLE FRAGMENT OF PEX19 JRNL REF J.BIOL.CHEM. V. 285 25410 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20554521 JRNL DOI 10.1074/JBC.M110.138503 REMARK 2 REMARK 2 RESOLUTION. 2.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 11190 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 589 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.48 REMARK 3 REFLECTION IN BIN (WORKING SET) : 793 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2363 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.87000 REMARK 3 B22 (A**2) : 0.66000 REMARK 3 B33 (A**2) : -2.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.77000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.623 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.269 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.197 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.090 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2403 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1591 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3254 ; 1.081 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3909 ; 0.853 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 298 ; 5.091 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;31.677 ;24.766 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 436 ;14.872 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;20.513 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 395 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2611 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 447 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1509 ; 1.344 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 600 ; 0.479 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2438 ; 2.222 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 894 ; 2.994 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 815 ; 4.236 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 40 A 158 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9590 1.8910 50.2740 REMARK 3 T TENSOR REMARK 3 T11: 0.1588 T22: 0.1662 REMARK 3 T33: 0.1499 T12: -0.0225 REMARK 3 T13: -0.0161 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 1.2488 L22: 2.4199 REMARK 3 L33: 2.0388 L12: -0.8996 REMARK 3 L13: -0.5137 L23: 1.2795 REMARK 3 S TENSOR REMARK 3 S11: -0.0747 S12: -0.0420 S13: 0.0150 REMARK 3 S21: 0.1327 S22: 0.0769 S23: -0.0399 REMARK 3 S31: 0.2339 S32: 0.1345 S33: -0.0021 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 159 A 368 REMARK 3 ORIGIN FOR THE GROUP (A): 17.8410 -0.5710 41.5330 REMARK 3 T TENSOR REMARK 3 T11: 0.0977 T22: 0.0499 REMARK 3 T33: 0.0732 T12: -0.0228 REMARK 3 T13: -0.0433 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 1.3879 L22: 1.4606 REMARK 3 L33: 3.5647 L12: -0.3643 REMARK 3 L13: -1.3143 L23: 1.4344 REMARK 3 S TENSOR REMARK 3 S11: 0.0199 S12: 0.0296 S13: -0.0114 REMARK 3 S21: -0.2136 S22: 0.0328 S23: 0.0225 REMARK 3 S31: -0.1482 S32: -0.0531 S33: -0.0526 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 15 B 30 REMARK 3 ORIGIN FOR THE GROUP (A): 37.6680 -11.1950 18.9470 REMARK 3 T TENSOR REMARK 3 T11: 0.0923 T22: 0.3261 REMARK 3 T33: 0.0731 T12: 0.0644 REMARK 3 T13: 0.0509 T23: -0.0694 REMARK 3 L TENSOR REMARK 3 L11: 6.1486 L22: 31.4880 REMARK 3 L33: 43.6608 L12: -3.1524 REMARK 3 L13: 2.7076 L23: 21.1405 REMARK 3 S TENSOR REMARK 3 S11: 0.1512 S12: 0.1395 S13: -0.0016 REMARK 3 S21: -0.6661 S22: 0.4718 S23: -1.0253 REMARK 3 S31: 0.8838 S32: 2.7356 S33: -0.6230 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 39 REMARK 3 RESIDUE RANGE : A 374 A 399 REMARK 3 RESIDUE RANGE : B 34 B 64 REMARK 3 ORIGIN FOR THE GROUP (A): 18.8800 0.9360 44.4390 REMARK 3 T TENSOR REMARK 3 T11: 0.1865 T22: 0.1012 REMARK 3 T33: 0.1532 T12: -0.0330 REMARK 3 T13: -0.0278 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.6645 L22: 0.9987 REMARK 3 L33: 1.6350 L12: -0.0413 REMARK 3 L13: -0.3490 L23: 0.6247 REMARK 3 S TENSOR REMARK 3 S11: -0.0410 S12: -0.0263 S13: -0.0024 REMARK 3 S21: -0.0585 S22: 0.0588 S23: -0.0146 REMARK 3 S31: 0.1053 S32: 0.0081 S33: -0.0177 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MK4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058644. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : DCM REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11779 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.420 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: UNREFINED MODEL OF PEX3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 3350, 0.1M BIS-TRIS, 0.2M REMARK 280 NACL, PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.83500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 146 REMARK 465 VAL A 147 REMARK 465 GLY A 148 REMARK 465 LYS A 149 REMARK 465 ASN A 150 REMARK 465 GLY A 151 REMARK 465 LYS A 220 REMARK 465 SER A 221 REMARK 465 SER A 222 REMARK 465 SER A 223 REMARK 465 TRP A 224 REMARK 465 ILE A 225 REMARK 465 ASN A 226 REMARK 465 LYS A 227 REMARK 465 ASP A 228 REMARK 465 GLY A 229 REMARK 465 SER A 230 REMARK 465 LYS A 231 REMARK 465 PRO A 232 REMARK 465 PRO A 245 REMARK 465 LEU A 246 REMARK 465 ALA A 247 REMARK 465 VAL A 248 REMARK 465 GLN A 249 REMARK 465 ALA A 250 REMARK 465 CYS A 251 REMARK 465 GLY A 252 REMARK 465 PRO A 301 REMARK 465 THR A 302 REMARK 465 GLU A 303 REMARK 465 GLN A 304 REMARK 465 ASP A 305 REMARK 465 LEU A 306 REMARK 465 GLN A 307 REMARK 465 HIS A 308 REMARK 465 GLY A 309 REMARK 465 ASN A 310 REMARK 465 SER A 311 REMARK 465 MET A 312 REMARK 465 ASN A 313 REMARK 465 SER A 314 REMARK 465 LEU A 315 REMARK 465 SER A 316 REMARK 465 SER A 317 REMARK 465 GLN A 369 REMARK 465 GLN A 370 REMARK 465 LEU A 371 REMARK 465 GLU A 372 REMARK 465 LYS A 373 REMARK 465 LYS B 31 REMARK 465 ALA B 32 REMARK 465 LYS B 33 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 GLN A 51 CD OE1 NE2 REMARK 470 SER A 98 OG REMARK 470 THR A 152 OG1 CG2 REMARK 470 GLN A 162 CD OE1 NE2 REMARK 470 LEU A 233 CG CD1 CD2 REMARK 470 THR A 244 OG1 CG2 REMARK 470 LEU A 253 CG CD1 CD2 REMARK 470 LYS A 355 CD CE NZ REMARK 470 PRO A 368 CG CD REMARK 470 ARG B 16 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 19 CD OE1 OE2 REMARK 470 GLU B 23 CG CD OE1 OE2 REMARK 470 ASP B 30 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 156 73.76 -117.88 REMARK 500 PHE A 299 73.33 -100.71 REMARK 500 REMARK 500 REMARK: NULL DBREF 3MK4 A 41 373 UNP P56589 PEX3_HUMAN 41 373 DBREF 3MK4 B 14 33 UNP P40855 PEX19_HUMAN 14 33 SEQADV 3MK4 GLY A 40 UNP P56589 EXPRESSION TAG SEQADV 3MK4 SER A 235 UNP P56589 CYS 235 ENGINEERED MUTATION SEQRES 1 A 334 GLY GLN GLU ARG GLU ALA ALA GLU TYR ILE ALA GLN ALA SEQRES 2 A 334 ARG ARG GLN TYR HIS PHE GLU SER ASN GLN ARG THR CYS SEQRES 3 A 334 ASN MET THR VAL LEU SER MET LEU PRO THR LEU ARG GLU SEQRES 4 A 334 ALA LEU MET GLN GLN LEU ASN SER GLU SER LEU THR ALA SEQRES 5 A 334 LEU LEU LYS ASN ARG PRO SER ASN LYS LEU GLU ILE TRP SEQRES 6 A 334 GLU ASP LEU LYS ILE ILE SER PHE THR ARG SER THR VAL SEQRES 7 A 334 ALA VAL TYR SER THR CYS MET LEU VAL VAL LEU LEU ARG SEQRES 8 A 334 VAL GLN LEU ASN ILE ILE GLY GLY TYR ILE TYR LEU ASP SEQRES 9 A 334 ASN ALA ALA VAL GLY LYS ASN GLY THR THR ILE LEU ALA SEQRES 10 A 334 PRO PRO ASP VAL GLN GLN GLN TYR LEU SER SER ILE GLN SEQRES 11 A 334 HIS LEU LEU GLY ASP GLY LEU THR GLU LEU ILE THR VAL SEQRES 12 A 334 ILE LYS GLN ALA VAL GLN LYS VAL LEU GLY SER VAL SER SEQRES 13 A 334 LEU LYS HIS SER LEU SER LEU LEU ASP LEU GLU GLN LYS SEQRES 14 A 334 LEU LYS GLU ILE ARG ASN LEU VAL GLU GLN HIS LYS SER SEQRES 15 A 334 SER SER TRP ILE ASN LYS ASP GLY SER LYS PRO LEU LEU SEQRES 16 A 334 SER HIS TYR MET MET PRO ASP GLU GLU THR PRO LEU ALA SEQRES 17 A 334 VAL GLN ALA CYS GLY LEU SER PRO ARG ASP ILE THR THR SEQRES 18 A 334 ILE LYS LEU LEU ASN GLU THR ARG ASP MET LEU GLU SER SEQRES 19 A 334 PRO ASP PHE SER THR VAL LEU ASN THR CYS LEU ASN ARG SEQRES 20 A 334 GLY PHE SER ARG LEU LEU ASP ASN MET ALA GLU PHE PHE SEQRES 21 A 334 ARG PRO THR GLU GLN ASP LEU GLN HIS GLY ASN SER MET SEQRES 22 A 334 ASN SER LEU SER SER VAL SER LEU PRO LEU ALA LYS ILE SEQRES 23 A 334 ILE PRO ILE VAL ASN GLY GLN ILE HIS SER VAL CYS SER SEQRES 24 A 334 GLU THR PRO SER HIS PHE VAL GLN ASP LEU LEU THR MET SEQRES 25 A 334 GLU GLN VAL LYS ASP PHE ALA ALA ASN VAL TYR GLU ALA SEQRES 26 A 334 PHE SER THR PRO GLN GLN LEU GLU LYS SEQRES 1 B 20 ALA ASP ARG GLU LEU GLU GLU LEU LEU GLU SER ALA LEU SEQRES 2 B 20 ASP ASP PHE ASP LYS ALA LYS FORMUL 3 HOH *67(H2 O) HELIX 1 1 GLY A 40 LEU A 84 1 45 HELIX 2 2 ASN A 85 LYS A 94 1 10 HELIX 3 3 ASN A 99 ASP A 143 1 45 HELIX 4 4 PRO A 157 SER A 166 1 10 HELIX 5 5 ILE A 168 GLY A 173 1 6 HELIX 6 6 GLY A 173 GLY A 192 1 20 HELIX 7 7 LEU A 202 GLN A 218 1 17 HELIX 8 8 LEU A 233 MET A 238 5 6 HELIX 9 9 SER A 254 GLU A 272 1 19 HELIX 10 10 SER A 273 GLU A 297 1 25 HELIX 11 11 LEU A 322 GLY A 331 1 10 HELIX 12 12 GLN A 332 CYS A 337 1 6 HELIX 13 13 HIS A 343 THR A 350 1 8 HELIX 14 14 MET A 351 THR A 367 1 17 HELIX 15 15 ASP B 15 ASP B 28 1 14 SHEET 1 A 2 SER A 199 SER A 201 0 SHEET 2 A 2 SER A 319 PRO A 321 -1 O LEU A 320 N LEU A 200 CRYST1 38.470 65.670 61.580 90.00 91.53 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025994 0.000000 0.000694 0.00000 SCALE2 0.000000 0.015228 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016245 0.00000