HEADER OXYGEN STORAGE, OXYGEN TRANSPORT 14-APR-10 3MKB TITLE CRYSTAL STRUCTURE DETERMINATION OF SHORTFIN MAKO (ISURUS OXYRINCHUS) TITLE 2 HEMOGLOBIN AT 1.9 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOGLOBIN SUBUNIT ALPHA; COMPND 3 CHAIN: A, C; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: HEMOGLOBIN SUBUNIT BETA; COMPND 6 CHAIN: B, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ISURUS OXYRINCHUS; SOURCE 3 ORGANISM_COMMON: SHORTFIN MAKO SHARK; SOURCE 4 ORGANISM_TAXID: 57983; SOURCE 5 CELL: RBC, ERYTHROCYTE; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: ISURUS OXYRINCHUS; SOURCE 8 ORGANISM_COMMON: SHORTFIN MAKO SHARK; SOURCE 9 ORGANISM_TAXID: 57983; SOURCE 10 CELL: RBC, ERYTHROCYTE KEYWDS HEMOGLOBIN, OXYGEN AFFINITY, ISURUS OXYRINCHUS, SHORTFIN MAKO, OXYGEN KEYWDS 2 STORAGE, OXYGEN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR P.RAMESH,S.S.SUNDARESAN,P.SATHYA MOORTHY,M.BALASUBRAMANIAN, AUTHOR 2 M.N.PONNUSWAMY REVDAT 4 01-NOV-23 3MKB 1 REMARK LINK REVDAT 3 20-JUN-18 3MKB 1 AUTHOR JRNL REVDAT 2 06-NOV-13 3MKB 1 JRNL VERSN REVDAT 1 26-JAN-11 3MKB 0 JRNL AUTH P.RAMESH,S.S.SUNDARESAN,P.SATHYA MOORTHY,M.BALASUBRAMANIAN, JRNL AUTH 2 M.N.PONNUSWAMY JRNL TITL STRUCTURAL STUDIES OF HAEMOGLOBIN FROM PISCES SPECIES JRNL TITL 2 SHORTFIN MAKO SHARK (ISURUS OXYRINCHUS) AT 1.9 ANGSTROM JRNL TITL 3 RESOLUTION JRNL REF J.SYNCHROTRON RADIAT. V. 20 843 2013 JRNL REFN ISSN 0909-0495 JRNL PMID 24121325 JRNL DOI 10.1107/S0909049513021572 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 37830 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2859 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4206 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 172 REMARK 3 SOLVENT ATOMS : 398 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.190 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.183 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.132 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.526 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4517 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6190 ; 1.719 ; 2.050 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 538 ; 5.660 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 177 ;35.384 ;23.559 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 685 ;16.060 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;13.951 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 678 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3398 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2498 ; 0.237 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3140 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 437 ; 0.210 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 74 ; 0.351 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.193 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2784 ; 1.161 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4353 ; 1.767 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1999 ; 2.844 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1829 ; 3.781 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MKB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058651. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5417 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOMAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37830 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 25.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 2.790 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07560 REMARK 200 FOR THE DATA SET : 4.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.78 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37450 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1GCV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% PEG 3350, PH 7.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.54950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 UNK B 45 REMARK 465 UNK B 46 REMARK 465 UNK B 47 REMARK 465 ALA D 43 REMARK 465 LYS D 44 REMARK 465 UNK D 45 REMARK 465 UNK D 46 REMARK 465 UNK D 47 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS B 53 O HOH B 347 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 67 44.07 -148.85 REMARK 500 LYS B 109 -135.83 50.69 REMARK 500 THR C 20 57.64 -145.49 REMARK 500 ASP C 75 60.06 -151.49 REMARK 500 SER D 17 -44.46 -139.88 REMARK 500 ASP D 70 41.07 -141.94 REMARK 500 LYS D 109 -126.06 48.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 141 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 58 NE2 REMARK 620 2 HEM A 141 NA 88.3 REMARK 620 3 HEM A 141 NB 101.8 92.7 REMARK 620 4 HEM A 141 NC 91.8 178.4 88.8 REMARK 620 5 HEM A 141 ND 78.5 87.3 179.8 91.2 REMARK 620 6 HIS A 87 NE2 163.2 99.2 92.9 80.3 86.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 137 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 82 NE2 REMARK 620 2 HEM B 137 NA 84.8 REMARK 620 3 HEM B 137 NB 92.1 83.5 REMARK 620 4 HEM B 137 NC 102.6 172.6 95.5 REMARK 620 5 HEM B 137 ND 93.0 91.9 172.8 88.4 REMARK 620 6 HOH B 347 O 173.3 96.3 81.5 76.2 93.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 141 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 58 NE2 REMARK 620 2 HEM C 141 NA 84.2 REMARK 620 3 HEM C 141 NB 103.5 91.6 REMARK 620 4 HEM C 141 NC 98.6 176.0 85.0 REMARK 620 5 HEM C 141 ND 78.6 92.1 175.9 91.2 REMARK 620 6 HIS C 87 NE2 172.6 96.4 83.9 81.2 94.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM D 137 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 82 NE2 REMARK 620 2 HEM D 137 NA 93.8 REMARK 620 3 HEM D 137 NB 91.8 89.9 REMARK 620 4 HEM D 137 NC 93.6 172.6 88.7 REMARK 620 5 HEM D 137 ND 93.3 90.7 174.8 90.0 REMARK 620 6 HOH D 175 O 165.6 100.0 84.3 72.6 90.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 141 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 137 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 141 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM D 137 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GCV RELATED DB: PDB REMARK 900 CONTAINS THE DEOXY FORM OF HEMOGLOBIN REMARK 900 RELATED ID: 1GCW RELATED DB: PDB REMARK 900 CO FORM HEMOGLOBIN FROM MUSTELUS GRISEUS REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE IS NO UNP REFERENCE SEQUENCE DATABASE FOR THIS PROTEIN AT THE REMARK 999 TIME OF PROCESSING. DBREF 3MKB A 1 140 PDB 3MKB 3MKB 1 140 DBREF 3MKB B 1 136 PDB 3MKB 3MKB 1 136 DBREF 3MKB C 1 140 PDB 3MKB 3MKB 1 140 DBREF 3MKB D 1 136 PDB 3MKB 3MKB 1 136 SEQRES 1 A 140 ALA PHE THR GLY VAL GLU ARG SER THR ILE GLY ALA ILE SEQRES 2 A 140 ALA LYS ILE LEU ALA SER THR PRO GLU ALA TYR GLY ALA SEQRES 3 A 140 GLU ALA LEU ALA ARG LEU PHE ALA THR HIS PRO GLY ALA SEQRES 4 A 140 LYS SER TYR PHE ASP TYR ALA ASP TYR SER ALA ALA GLY SEQRES 5 A 140 ALA LYS VAL GLN LEU HIS GLY GLY LYS VAL ILE ARG ALA SEQRES 6 A 140 VAL VAL SER ALA ALA GLU HIS ASP ASP ASP LEU HIS ALA SEQRES 7 A 140 HIS LEU MET VAL LEU ALA VAL THR HIS GLY LYS LYS LEU SEQRES 8 A 140 LEU VAL ASP PRO SER ASN PHE PRO MET LEU SER GLU CYS SEQRES 9 A 140 ILE LEU VAL THR LEU ALA THR HIS LEU ALA GLU PHE SER SEQRES 10 A 140 PRO ALA THR HIS CYS ALA VAL ASP LYS LEU LEU SER ALA SEQRES 11 A 140 ILE SER SER GLU LEU SER SER LYS TYR ARG SEQRES 1 B 136 VAL HIS TRP THR GLN GLU GLU ARG ASP GLU ILE VAL LYS SEQRES 2 B 136 THR PHE PHE SER ALA ASN SER SER ALA ILE GLY THR LYS SEQRES 3 B 136 ALA LEU GLU ARG MET PHE VAL VAL PHE PRO TRP THR ASN SEQRES 4 B 136 ALA TYR PHE ALA LYS UNK UNK UNK PHE SER ALA SER ILE SEQRES 5 B 136 HIS ALA ALA ILE VAL VAL GLY ALA LEU GLN ASP ALA VAL SEQRES 6 B 136 LYS HIS GLU ASP ASP VAL LYS ALA GLU PHE VAL ASN ILE SEQRES 7 B 136 SER LYS ALA HIS ALA ASP LYS LEU HIS ILE ASP PRO GLY SEQRES 8 B 136 SER PHE HIS LEU LEU THR ASP SER PHE ILE VAL GLU LEU SEQRES 9 B 136 ALA HIS LEU LYS LYS VAL ALA PHE THR PRO PHE VAL PHE SEQRES 10 B 136 ALA VAL TRP ILE LYS PHE PHE GLN VAL VAL ILE ASP ALA SEQRES 11 B 136 ILE SER SER GLN TYR HIS SEQRES 1 C 140 ALA PHE THR GLY VAL GLU ARG SER THR ILE GLY ALA ILE SEQRES 2 C 140 ALA LYS ILE LEU ALA SER THR PRO GLU ALA TYR GLY ALA SEQRES 3 C 140 GLU ALA LEU ALA ARG LEU PHE ALA THR HIS PRO GLY ALA SEQRES 4 C 140 LYS SER TYR PHE ASP TYR ALA ASP TYR SER ALA ALA GLY SEQRES 5 C 140 ALA LYS VAL GLN LEU HIS GLY GLY LYS VAL ILE ARG ALA SEQRES 6 C 140 VAL VAL SER ALA ALA GLU HIS ASP ASP ASP LEU HIS ALA SEQRES 7 C 140 HIS LEU MET VAL LEU ALA VAL THR HIS GLY LYS LYS LEU SEQRES 8 C 140 LEU VAL ASP PRO SER ASN PHE PRO MET LEU SER GLU CYS SEQRES 9 C 140 ILE LEU VAL THR LEU ALA THR HIS LEU ALA GLU PHE SER SEQRES 10 C 140 PRO ALA THR HIS CYS ALA VAL ASP LYS LEU LEU SER ALA SEQRES 11 C 140 ILE SER SER GLU LEU SER SER LYS TYR ARG SEQRES 1 D 136 VAL HIS TRP THR GLN GLU GLU ARG ASP GLU ILE VAL LYS SEQRES 2 D 136 THR PHE PHE SER ALA ASN SER SER ALA ILE GLY THR LYS SEQRES 3 D 136 ALA LEU GLU ARG MET PHE VAL VAL PHE PRO TRP THR ASN SEQRES 4 D 136 ALA TYR PHE ALA LYS UNK UNK UNK PHE SER ALA SER ILE SEQRES 5 D 136 HIS ALA ALA ILE VAL VAL GLY ALA LEU GLN ASP ALA VAL SEQRES 6 D 136 LYS HIS GLU ASP ASP VAL LYS ALA GLU PHE VAL ASN ILE SEQRES 7 D 136 SER LYS ALA HIS ALA ASP LYS LEU HIS ILE ASP PRO GLY SEQRES 8 D 136 SER PHE HIS LEU LEU THR ASP SER PHE ILE VAL GLU LEU SEQRES 9 D 136 ALA HIS LEU LYS LYS VAL ALA PHE THR PRO PHE VAL PHE SEQRES 10 D 136 ALA VAL TRP ILE LYS PHE PHE GLN VAL VAL ILE ASP ALA SEQRES 11 D 136 ILE SER SER GLN TYR HIS HET HEM A 141 43 HET HEM B 137 43 HET HEM C 141 43 HET HEM D 137 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 5 HEM 4(C34 H32 FE N4 O4) FORMUL 9 HOH *398(H2 O) HELIX 1 1 THR A 3 THR A 20 1 18 HELIX 2 2 THR A 20 HIS A 36 1 17 HELIX 3 3 PRO A 37 PHE A 43 5 7 HELIX 4 4 GLY A 52 GLU A 71 1 20 HELIX 5 5 ASP A 75 LEU A 80 1 6 HELIX 6 6 LEU A 80 LYS A 90 1 11 HELIX 7 7 SER A 96 LEU A 113 1 18 HELIX 8 8 SER A 117 SER A 136 1 20 HELIX 9 9 THR B 4 ALA B 18 1 15 HELIX 10 10 ASN B 19 PHE B 35 1 17 HELIX 11 11 PRO B 36 PHE B 42 5 7 HELIX 12 12 SER B 49 LYS B 66 1 18 HELIX 13 13 ASP B 70 PHE B 75 1 6 HELIX 14 14 PHE B 75 LYS B 85 1 11 HELIX 15 15 ASP B 89 GLY B 91 5 3 HELIX 16 16 SER B 92 LYS B 109 1 18 HELIX 17 17 VAL B 110 PHE B 112 5 3 HELIX 18 18 THR B 113 SER B 133 1 21 HELIX 19 19 THR C 3 THR C 20 1 18 HELIX 20 20 THR C 20 HIS C 36 1 17 HELIX 21 21 PRO C 37 PHE C 43 5 7 HELIX 22 22 GLY C 52 ALA C 70 1 19 HELIX 23 23 ASP C 75 LEU C 80 1 6 HELIX 24 24 LEU C 80 LYS C 90 1 11 HELIX 25 25 SER C 96 LEU C 113 1 18 HELIX 26 26 SER C 117 SER C 136 1 20 HELIX 27 27 THR D 4 PHE D 16 1 13 HELIX 28 28 ASN D 19 PHE D 35 1 17 HELIX 29 29 PRO D 36 ALA D 40 5 5 HELIX 30 30 SER D 49 HIS D 67 1 19 HELIX 31 31 ASP D 70 LYS D 85 1 16 HELIX 32 32 ASP D 89 GLY D 91 5 3 HELIX 33 33 SER D 92 LYS D 109 1 18 HELIX 34 34 VAL D 110 PHE D 112 5 3 HELIX 35 35 THR D 113 SER D 132 1 20 LINK NE2 HIS A 58 FE HEM A 141 1555 1555 2.41 LINK NE2 HIS A 87 FE HEM A 141 1555 1555 2.17 LINK NE2 HIS B 82 FE HEM B 137 1555 1555 2.20 LINK FE HEM B 137 O HOH B 347 1555 1555 2.20 LINK NE2 HIS C 58 FE HEM C 141 1555 1555 2.29 LINK NE2 HIS C 87 FE HEM C 141 1555 1555 2.16 LINK NE2 HIS D 82 FE HEM D 137 1555 1555 2.10 LINK FE HEM D 137 O HOH D 175 1555 1555 2.50 SITE 1 AC1 13 PHE A 43 TYR A 45 HIS A 58 VAL A 62 SITE 2 AC1 13 ALA A 65 HIS A 87 LEU A 91 VAL A 93 SITE 3 AC1 13 PHE A 98 LEU A 101 LEU A 135 HOH A 176 SITE 4 AC1 13 HOH A 192 SITE 1 AC2 12 TYR B 41 PHE B 42 HIS B 53 ILE B 56 SITE 2 AC2 12 ALA B 60 HIS B 82 LEU B 86 ILE B 88 SITE 3 AC2 12 PHE B 93 LEU B 96 ILE B 131 HOH B 347 SITE 1 AC3 15 TYR C 42 PHE C 43 HIS C 58 LYS C 61 SITE 2 AC3 15 VAL C 62 ALA C 65 LEU C 83 HIS C 87 SITE 3 AC3 15 LEU C 91 VAL C 93 PHE C 98 LEU C 101 SITE 4 AC3 15 LEU C 135 HOH C 164 HOH C 207 SITE 1 AC4 11 TYR D 41 PHE D 42 HIS D 53 ILE D 56 SITE 2 AC4 11 HIS D 82 LEU D 86 ILE D 88 PHE D 93 SITE 3 AC4 11 ILE D 131 HOH D 175 HOH D 313 CRYST1 60.259 61.099 72.207 90.00 96.49 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016595 0.000000 0.001888 0.00000 SCALE2 0.000000 0.016367 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013938 0.00000