HEADER CONTRACTILE PROTEIN 14-APR-10 3MKD TITLE CRYSTAL STRUCTURE OF MYOSIN-2 DICTYOSTELIUM DISCOIDEUM MOTOR DOMAIN TITLE 2 S456Y MUTANT IN COMPLEX WITH ADP-ORTHOVANADATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN-2 HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MYOSIN-2 MOTOR DOMAIN, UNP RESIDUES 2-693; COMPND 5 SYNONYM: MYOSIN II HEAVY CHAIN; COMPND 6 EC: 3.6.4.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; SOURCE 3 ORGANISM_COMMON: SLIME MOLD; SOURCE 4 ORGANISM_TAXID: 44689; SOURCE 5 EXPRESSION_SYSTEM: DICTYOSTELIUM DISCOIDEUM; SOURCE 6 EXPRESSION_SYSTEM_COMMON: SLIME MOLD; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 44689; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORF+; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDXA-3H KEYWDS CONTRACTILE PROTEIN, ALLOSTERIC, METHYLATION, ATP-BINDING, MOTOR KEYWDS 2 PROTEIN, ACTIN-BINDING, PHOSPHOPROTEIN, ADP-ORTHOVANADATE, KEYWDS 3 CALMODULIN-BINDING, NUCLEOTIDE-BINDING, MYOSIN EXPDTA X-RAY DIFFRACTION AUTHOR D.KATHMANN,R.P.DIENSTHUBER,R.FEDOROV,D.J.MANSTEIN,G.TSIAVALIARIS REVDAT 2 01-NOV-23 3MKD 1 REMARK SEQADV LINK REVDAT 1 06-APR-11 3MKD 0 JRNL AUTH D.KATHMANN,R.P.DIENSTHUBER,R.FEDOROV,D.J.MANSTEIN, JRNL AUTH 2 G.TSIAVALIARIS JRNL TITL SWITCH-2 DEPENDENT MODULATION OF THE MYOSIN POWER STROKE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 38972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1940 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5545 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 324 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.57700 REMARK 3 B22 (A**2) : -0.52900 REMARK 3 B33 (A**2) : 9.10700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM SIGMAA (A) : 0.43 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.44 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 97.58 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : VO4.PARAM REMARK 3 PARAMETER FILE 4 : ADP.PARAM REMARK 3 PARAMETER FILE 5 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3MKD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058653. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-08; 27-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; BESSY REMARK 200 BEAMLINE : ID23-1; 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00905; 1.00605 REMARK 200 MONOCHROMATOR : SINGLE SILICON (111) REMARK 200 MONOCHROMATOR; DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : BENT CYLINDRICAL MIRROR; MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R; ADSC QUANTUM REMARK 200 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49256 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : 0.06900 REMARK 200 FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.47100 REMARK 200 R SYM FOR SHELL (I) : 0.47000 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1VOM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM HEPES, 140MM SODIUM CHLORIDE, REMARK 280 11%(W/V) PEG 5000, 5MM MAGNESIUM CHLORIDE, 5MM DTT, 1MM EGTA, 2% REMARK 280 (V/V) MPD, PH 7.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.94950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.94950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.80050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 73.67800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.80050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 73.67800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 76.94950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.80050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 73.67800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 76.94950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.80050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 73.67800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1130 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1180 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 262 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 206 -119.66 45.80 REMARK 500 LEU A 262 64.08 35.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 186 OG1 REMARK 620 2 SER A 237 OG 94.4 REMARK 620 3 VO4 A 998 O1 170.1 89.1 REMARK 620 4 ADP A 999 O1B 83.0 177.3 93.3 REMARK 620 5 HOH A1017 O 84.2 96.4 86.2 82.5 REMARK 620 6 HOH A1102 O 88.0 87.5 101.4 93.2 171.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VO4 A 998 V REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 999 O3B REMARK 620 2 VO4 A 998 O1 82.9 REMARK 620 3 VO4 A 998 O2 103.7 124.8 REMARK 620 4 VO4 A 998 O3 85.8 118.8 116.3 REMARK 620 5 VO4 A 998 O4 168.6 90.2 87.8 89.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VO4 A 998 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 999 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JJ9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYOSIN-2 IN COMPLEX WITH ADP-METAVANADATE REMARK 900 RELATED ID: 1VOM RELATED DB: PDB REMARK 900 COMPLEX BETWEEN DICTYOSTELIUM MYOSIN AND MGADP AND VANADATE AT 1.9A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1W9J RELATED DB: PDB REMARK 900 MYOSIN II DICTYOSTELIUM DISCOIDEUM MOTOR DOMAIN S456Y BOUND WITH REMARK 900 MGADP-ALF4 REMARK 900 RELATED ID: 1W9I RELATED DB: PDB REMARK 900 MYOSIN II DICTYOSTELIUM DISCOIDEUM MOTOR DOMAIN S456Y BOUND WITH REMARK 900 MGADP-BEFX REMARK 900 RELATED ID: 1G8X RELATED DB: PDB REMARK 900 STRUCTURE OF A GENETICALLY ENGINEERED MOLECULAR MOTOR REMARK 900 RELATED ID: 1W9K RELATED DB: PDB REMARK 900 DICTYOSTELIUM DISCOIDEUM MYOSIN II MOTOR DOMAIN S456E WITH BOUND REMARK 900 MGADP-BEFX REMARK 900 RELATED ID: 1W9L RELATED DB: PDB REMARK 900 MYOSIN II DICTYOSTELIUM DISCOIDEUM MOTOR DOMAIN S456E BOUND WITH REMARK 900 MGADP-ALF4 REMARK 900 RELATED ID: 2JHR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYOSIN-2 MOTOR DOMAIN IN COMPLEX WITH ADP- REMARK 900 METAVANADATE AND PENTABROMOPSEUDILIN REMARK 900 RELATED ID: 1MND RELATED DB: PDB REMARK 900 TRUNCATED HEAD OF MYOSIN FROM DICTYOSTELIUM DISCOIDEUM COMPLEXED REMARK 900 WITH MGADP-ALF4 REMARK 900 RELATED ID: 1MMD RELATED DB: PDB REMARK 900 TRUNCATED HEAD OF MYOSIN FROM DICTYOSTELIUM DISCOIDEUM COMPLEXED REMARK 900 WITH MGADP-BEF3 REMARK 900 RELATED ID: 2AKA RELATED DB: PDB REMARK 900 STRUCTURE OF THE NUCLEOTIDE-FREE MYOSIN II MOTOR DOMAIN FROM REMARK 900 DICTYOSTELIUM DISCOIDEUM USED TO THE GTPASE DOMAIN OF DYNAMIN 1 REMARK 900 FROM RATTUS NORVEGICUS DBREF 3MKD A 2 693 UNP P08799 MYS2_DICDI 2 693 SEQADV 3MKD TYR A 456 UNP P08799 SER 456 ENGINEERED MUTATION SEQRES 1 A 692 ASN PRO ILE HIS ASP ARG THR SER ASP TYR HIS LYS TYR SEQRES 2 A 692 LEU LYS VAL LYS GLN GLY ASP SER ASP LEU PHE LYS LEU SEQRES 3 A 692 THR VAL SER ASP LYS ARG TYR ILE TRP TYR ASN PRO ASP SEQRES 4 A 692 PRO LYS GLU ARG ASP SER TYR GLU CYS GLY GLU ILE VAL SEQRES 5 A 692 SER GLU THR SER ASP SER PHE THR PHE LYS THR VAL ASP SEQRES 6 A 692 GLY GLN ASP ARG GLN VAL LYS LYS ASP ASP ALA ASN GLN SEQRES 7 A 692 ARG ASN PRO ILE LYS PHE ASP GLY VAL GLU ASP MET SER SEQRES 8 A 692 GLU LEU SER TYR LEU ASN GLU PRO ALA VAL PHE HIS ASN SEQRES 9 A 692 LEU ARG VAL ARG TYR ASN GLN ASP LEU ILE TYR THR TYR SEQRES 10 A 692 SER GLY LEU PHE LEU VAL ALA VAL ASN PRO PHE LYS ARG SEQRES 11 A 692 ILE PRO ILE TYR THR GLN GLU MET VAL ASP ILE PHE LYS SEQRES 12 A 692 GLY ARG ARG ARG ASN GLU VAL ALA PRO HIS ILE PHE ALA SEQRES 13 A 692 ILE SER ASP VAL ALA TYR ARG SER MET LEU ASP ASP ARG SEQRES 14 A 692 GLN ASN GLN SER LEU LEU ILE THR GLY GLU SER GLY ALA SEQRES 15 A 692 GLY LYS THR GLU ASN THR LYS LYS VAL ILE GLN TYR LEU SEQRES 16 A 692 ALA SER VAL ALA GLY ARG ASN GLN ALA ASN GLY SER GLY SEQRES 17 A 692 VAL LEU GLU GLN GLN ILE LEU GLN ALA ASN PRO ILE LEU SEQRES 18 A 692 GLU ALA PHE GLY ASN ALA LYS THR THR ARG ASN ASN ASN SEQRES 19 A 692 SER SER ARG PHE GLY LYS PHE ILE GLU ILE GLN PHE ASN SEQRES 20 A 692 SER ALA GLY PHE ILE SER GLY ALA SER ILE GLN SER TYR SEQRES 21 A 692 LEU LEU GLU LYS SER ARG VAL VAL PHE GLN SER GLU THR SEQRES 22 A 692 GLU ARG ASN TYR HIS ILE PHE TYR GLN LEU LEU ALA GLY SEQRES 23 A 692 ALA THR ALA GLU GLU LYS LYS ALA LEU HIS LEU ALA GLY SEQRES 24 A 692 PRO GLU SER PHE ASN TYR LEU ASN GLN SER GLY CYS VAL SEQRES 25 A 692 ASP ILE LYS GLY VAL SER ASP SER GLU GLU PHE LYS ILE SEQRES 26 A 692 THR ARG GLN ALA MET ASP ILE VAL GLY PHE SER GLN GLU SEQRES 27 A 692 GLU GLN MET SER ILE PHE LYS ILE ILE ALA GLY ILE LEU SEQRES 28 A 692 HIS LEU GLY ASN ILE LYS PHE GLU LYS GLY ALA GLY GLU SEQRES 29 A 692 GLY ALA VAL LEU LYS ASP LYS THR ALA LEU ASN ALA ALA SEQRES 30 A 692 SER THR VAL PHE GLY VAL ASN PRO SER VAL LEU GLU LYS SEQRES 31 A 692 ALA LEU MET GLU PRO ARG ILE LEU ALA GLY ARG ASP LEU SEQRES 32 A 692 VAL ALA GLN HIS LEU ASN VAL GLU LYS SER SER SER SER SEQRES 33 A 692 ARG ASP ALA LEU VAL LYS ALA LEU TYR GLY ARG LEU PHE SEQRES 34 A 692 LEU TRP LEU VAL LYS LYS ILE ASN ASN VAL LEU CYS GLN SEQRES 35 A 692 GLU ARG LYS ALA TYR PHE ILE GLY VAL LEU ASP ILE TYR SEQRES 36 A 692 GLY PHE GLU ILE PHE LYS VAL ASN SER PHE GLU GLN LEU SEQRES 37 A 692 CYS ILE ASN TYR THR ASN GLU LYS LEU GLN GLN PHE PHE SEQRES 38 A 692 ASN HIS HIS MET PHE LYS LEU GLU GLN GLU GLU TYR LEU SEQRES 39 A 692 LYS GLU LYS ILE ASN TRP THR PHE ILE ASP PHE GLY LEU SEQRES 40 A 692 ASP SER GLN ALA THR ILE ASP LEU ILE ASP GLY ARG GLN SEQRES 41 A 692 PRO PRO GLY ILE LEU ALA LEU LEU ASP GLU GLN SER VAL SEQRES 42 A 692 PHE PRO ASN ALA THR ASP ASN THR LEU ILE THR LYS LEU SEQRES 43 A 692 HIS SER HIS PHE SER LYS LYS ASN ALA LYS TYR GLU GLU SEQRES 44 A 692 PRO ARG PHE SER LYS THR GLU PHE GLY VAL THR HIS TYR SEQRES 45 A 692 ALA GLY GLN VAL MET TYR GLU ILE GLN ASP TRP LEU GLU SEQRES 46 A 692 LYS ASN LYS ASP PRO LEU GLN GLN ASP LEU GLU LEU CYS SEQRES 47 A 692 PHE LYS ASP SER SER ASP ASN VAL VAL THR LYS LEU PHE SEQRES 48 A 692 ASN ASP PRO ASN ILE ALA SER ARG ALA LYS LYS GLY ALA SEQRES 49 A 692 ASN PHE ILE THR VAL ALA ALA GLN TYR LYS GLU GLN LEU SEQRES 50 A 692 ALA SER LEU MET ALA THR LEU GLU THR THR ASN PRO HIS SEQRES 51 A 692 PHE VAL ARG CYS ILE ILE PRO ASN ASN LYS GLN LEU PRO SEQRES 52 A 692 ALA LYS LEU GLU ASP LYS VAL VAL LEU ASP GLN LEU ARG SEQRES 53 A 692 CYS ASN GLY VAL LEU GLU GLY ILE ARG ILE THR ARG LYS SEQRES 54 A 692 GLY PHE PRO HET MG A 901 1 HET VO4 A 998 5 HET ADP A 999 27 HETNAM MG MAGNESIUM ION HETNAM VO4 VANADATE ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 VO4 O4 V 3- FORMUL 4 ADP C10 H15 N5 O10 P2 FORMUL 5 HOH *324(H2 O) HELIX 1 1 SER A 9 LYS A 16 1 8 HELIX 2 2 ASP A 21 VAL A 29 1 9 HELIX 3 3 ASP A 75 ALA A 77 5 3 HELIX 4 4 PRO A 82 ASP A 86 5 5 HELIX 5 5 ASP A 90 LEU A 94 5 5 HELIX 6 6 ASN A 98 ASN A 111 1 14 HELIX 7 7 THR A 136 LYS A 144 1 9 HELIX 8 8 HIS A 154 ASP A 169 1 16 HELIX 9 9 GLY A 184 GLY A 201 1 18 HELIX 10 10 GLY A 209 GLY A 226 1 18 HELIX 11 11 TYR A 278 ALA A 288 1 11 HELIX 12 12 THR A 289 LEU A 296 1 8 HELIX 13 13 GLY A 300 PHE A 304 5 5 HELIX 14 14 SER A 319 GLY A 335 1 17 HELIX 15 15 SER A 337 GLY A 355 1 19 HELIX 16 16 LYS A 372 GLY A 383 1 12 HELIX 17 17 ASN A 385 GLU A 395 1 11 HELIX 18 18 ASN A 410 CYS A 442 1 33 HELIX 19 19 SER A 465 PHE A 487 1 23 HELIX 20 20 PHE A 487 LYS A 498 1 12 HELIX 21 21 SER A 510 GLY A 519 1 10 HELIX 22 22 GLY A 524 PHE A 535 1 12 HELIX 23 23 THR A 539 SER A 552 1 14 HELIX 24 24 ASP A 583 ASP A 590 1 8 HELIX 25 25 GLN A 593 ASP A 602 1 10 HELIX 26 26 ASP A 605 ASP A 614 1 10 HELIX 27 27 ASP A 614 SER A 619 1 6 HELIX 28 28 THR A 629 THR A 647 1 19 HELIX 29 29 GLU A 668 GLY A 680 1 13 HELIX 30 30 GLY A 680 GLY A 691 1 12 SHEET 1 A 5 ASP A 69 LYS A 73 0 SHEET 2 A 5 SER A 59 LYS A 63 -1 N PHE A 60 O VAL A 72 SHEET 3 A 5 GLU A 48 GLU A 55 -1 N VAL A 53 O THR A 61 SHEET 4 A 5 TYR A 34 TYR A 37 -1 N ILE A 35 O GLY A 50 SHEET 5 A 5 ASN A 78 GLN A 79 -1 O ASN A 78 N TRP A 36 SHEET 1 B 7 TYR A 116 SER A 119 0 SHEET 2 B 7 PHE A 122 VAL A 126 -1 O PHE A 122 N SER A 119 SHEET 3 B 7 ASN A 649 ILE A 656 1 O ILE A 656 N ALA A 125 SHEET 4 B 7 GLN A 173 THR A 178 1 N SER A 174 O HIS A 651 SHEET 5 B 7 TYR A 448 ASP A 454 1 O GLY A 451 N GLN A 173 SHEET 6 B 7 GLY A 240 PHE A 247 -1 N LYS A 241 O ASP A 454 SHEET 7 B 7 ILE A 253 TYR A 261 -1 O GLY A 255 N GLN A 246 SHEET 1 C 2 ASN A 227 THR A 230 0 SHEET 2 C 2 ASN A 233 SER A 237 -1 O ASN A 233 N THR A 230 SHEET 1 D 2 GLU A 360 LYS A 361 0 SHEET 2 D 2 ALA A 367 VAL A 368 -1 O VAL A 368 N GLU A 360 SHEET 1 E 2 ARG A 397 ALA A 400 0 SHEET 2 E 2 ASP A 403 ALA A 406 -1 O VAL A 405 N ILE A 398 SHEET 1 F 3 TYR A 558 GLU A 559 0 SHEET 2 F 3 GLU A 567 HIS A 572 -1 O GLY A 569 N GLU A 559 SHEET 3 F 3 GLY A 575 GLU A 580 -1 O TYR A 579 N PHE A 568 SHEET 1 G 2 LYS A 622 LYS A 623 0 SHEET 2 G 2 ASN A 626 PHE A 627 -1 O ASN A 626 N LYS A 623 LINK OG1 THR A 186 MG MG A 901 1555 1555 1.94 LINK OG SER A 237 MG MG A 901 1555 1555 2.15 LINK MG MG A 901 O1 VO4 A 998 1555 1555 2.03 LINK MG MG A 901 O1B ADP A 999 1555 1555 2.23 LINK MG MG A 901 O HOH A1017 1555 1555 2.15 LINK MG MG A 901 O HOH A1102 1555 1555 2.03 LINK V VO4 A 998 O3B ADP A 999 1555 1555 1.80 CISPEP 1 GLN A 521 PRO A 522 0 -0.18 SITE 1 AC1 6 THR A 186 SER A 237 VO4 A 998 ADP A 999 SITE 2 AC1 6 HOH A1017 HOH A1102 SITE 1 AC2 11 SER A 181 GLY A 182 LYS A 185 ASN A 233 SITE 2 AC2 11 SER A 236 SER A 237 GLY A 457 MG A 901 SITE 3 AC2 11 ADP A 999 HOH A1010 HOH A1017 SITE 1 AC3 20 ASN A 127 PRO A 128 PHE A 129 LYS A 130 SITE 2 AC3 20 TYR A 135 GLY A 182 ALA A 183 GLY A 184 SITE 3 AC3 20 LYS A 185 THR A 186 GLU A 187 ASN A 233 SITE 4 AC3 20 MG A 901 VO4 A 998 HOH A1017 HOH A1019 SITE 5 AC3 20 HOH A1021 HOH A1083 HOH A1102 HOH A1258 CRYST1 89.601 147.356 153.899 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011161 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006786 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006498 0.00000