HEADER ISOMERASE 16-APR-10 3MLC TITLE CRYSTAL STRUCTURE OF FG41MSAD INACTIVATED BY 3-CHLOROPROPIOLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FG41 MALONATE SEMIALDEHYDE DECARBOXYLASE; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 EC: 4.1.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEFORM BACTERIUM; SOURCE 3 ORGANISM_TAXID: 1728; SOURCE 4 STRAIN: FG41; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-3B KEYWDS TAUTOMERASE SUPERFAMILY, MALONATE SEMIALDEHYDE DECARBOXYLASE, BETA- KEYWDS 2 ALPHA-BETA-MOTIF, CORYNEFORM BACTERIUM FG41, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.GUO,H.SERRANO,G.J.POELARENDS,W.H.JOHNSON JR.,M.L.HACKERT, AUTHOR 2 C.P.WHITMAN REVDAT 6 06-SEP-23 3MLC 1 REMARK LINK REVDAT 5 08-NOV-17 3MLC 1 REMARK REVDAT 4 08-OCT-14 3MLC 1 AUTHOR REVDAT 3 18-DEC-13 3MLC 1 JRNL REVDAT 2 03-JUL-13 3MLC 1 JRNL VERSN REVDAT 1 06-APR-11 3MLC 0 JRNL AUTH Y.GUO,H.SERRANO,G.J.POELARENDS,W.H.JOHNSON,M.L.HACKERT, JRNL AUTH 2 C.P.WHITMAN JRNL TITL KINETIC, MUTATIONAL, AND STRUCTURAL ANALYSIS OF MALONATE JRNL TITL 2 SEMIALDEHYDE DECARBOXYLASE FROM CORYNEFORM BACTERIUM STRAIN JRNL TITL 3 FG41: MECHANISTIC IMPLICATIONS FOR THE DECARBOXYLASE AND JRNL TITL 4 HYDRATASE ACTIVITIES. JRNL REF BIOCHEMISTRY V. 52 4830 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23781927 JRNL DOI 10.1021/BI400567A REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 102.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 45095 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2398 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2076 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 60.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.3840 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.4860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4911 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 486 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.248 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.219 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.372 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5036 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6856 ; 1.687 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 635 ; 7.046 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 230 ;35.438 ;23.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 763 ;17.983 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;18.643 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 800 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3873 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2403 ; 0.252 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3360 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 501 ; 0.215 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 143 ; 0.184 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 40 ; 0.201 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3299 ; 0.733 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5185 ; 1.217 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1907 ; 2.158 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1671 ; 3.258 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MLC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000058688. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : VARIMAX REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47735 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.210 REMARK 200 RESOLUTION RANGE LOW (A) : 102.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 33.10 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 55.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.89400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CASPR REMARK 200 STARTING MODEL: PDB ENTRY 3MJZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3 MICRO LITER OF PROTEIN SOLUTION REMARK 280 (24.5 MG/ML IN 10 MM SODIUM PHOSPHATE BUFFER, PH 8) MIXED WITH 3 REMARK 280 MICRO LITER CRYSTALLIZATION SOLUTION (0.1 M TRIS HYDROCHLORIDE REMARK 280 BUFFER, PH 8.5, 2.0 M MONO-AMMONIUM DIHYDROGEN PHOSPHATE), REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 72.11350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.11350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 72.11350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.11350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 72.11350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 72.11350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 72.11350 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 72.11350 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 72.11350 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 72.11350 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 72.11350 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 72.11350 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 72.11350 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 72.11350 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 72.11350 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 72.11350 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 72.11350 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 72.11350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 216.34050 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 144.22700 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 72.11350 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 144.22700 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 -72.11350 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 216.34050 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 72.11350 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 216.34050 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 144.22700 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 216.34050 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 144.22700 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 -72.11350 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D 183 LIES ON A SPECIAL POSITION. REMARK 375 HOH E 403 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 130 REMARK 465 PRO A 131 REMARK 465 ALA A 132 REMARK 465 THR A 133 REMARK 465 GLY A 134 REMARK 465 ALA A 135 REMARK 465 ALA A 136 REMARK 465 ILE B 130 REMARK 465 PRO B 131 REMARK 465 ALA B 132 REMARK 465 THR B 133 REMARK 465 GLY B 134 REMARK 465 ALA B 135 REMARK 465 ALA B 136 REMARK 465 ILE C 130 REMARK 465 PRO C 131 REMARK 465 ALA C 132 REMARK 465 THR C 133 REMARK 465 GLY C 134 REMARK 465 ALA C 135 REMARK 465 ALA C 136 REMARK 465 ILE D 130 REMARK 465 PRO D 131 REMARK 465 ALA D 132 REMARK 465 THR D 133 REMARK 465 GLY D 134 REMARK 465 ALA D 135 REMARK 465 ALA D 136 REMARK 465 ILE E 130 REMARK 465 PRO E 131 REMARK 465 ALA E 132 REMARK 465 THR E 133 REMARK 465 GLY E 134 REMARK 465 ALA E 135 REMARK 465 ALA E 136 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 13 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 14 CG CD OE1 OE2 REMARK 470 ARG D 13 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 14 CG CD OE1 OE2 REMARK 470 GLN E 60 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N PRO E 1 OAI PR6 E 150 1.95 REMARK 500 N PRO A 1 OAI PR6 A 150 2.09 REMARK 500 N PRO D 1 OAI PR6 D 150 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 13 -50.30 116.83 REMARK 500 GLN A 73 131.31 -35.38 REMARK 500 ASN A 109 -154.95 -137.49 REMARK 500 ARG C 13 -55.93 77.31 REMARK 500 PRO C 47 -37.64 -28.37 REMARK 500 GLU C 53 -144.10 -89.31 REMARK 500 ASP D 10 -86.33 11.70 REMARK 500 GLU D 53 -141.82 -82.43 REMARK 500 ALA D 55 19.73 54.41 REMARK 500 SER E 48 -35.90 110.36 REMARK 500 GLU E 53 -148.78 -91.89 REMARK 500 ALA E 55 20.05 48.07 REMARK 500 ARG E 61 -78.78 -83.97 REMARK 500 SER E 62 148.32 114.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 11 SER A 12 -136.73 REMARK 500 SER D 9 ASP D 10 131.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PR6 A 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PR6 B 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PR6 C 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PR6 D 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PR6 E 150 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MJZ RELATED DB: PDB REMARK 900 NATIVE FG41MSAD DBREF 3MLC A 1 136 PDB 3MLC 3MLC 1 136 DBREF 3MLC B 1 136 PDB 3MLC 3MLC 1 136 DBREF 3MLC C 1 136 PDB 3MLC 3MLC 1 136 DBREF 3MLC D 1 136 PDB 3MLC 3MLC 1 136 DBREF 3MLC E 1 136 PDB 3MLC 3MLC 1 136 SEQRES 1 A 136 PRO LEU ILE ARG ILE ASP LEU THR SER ASP ARG SER ARG SEQRES 2 A 136 GLU GLN ARG ARG ALA ILE ALA ASP ALA VAL HIS ASP ALA SEQRES 3 A 136 LEU VAL GLU VAL LEU ALA ILE PRO ALA ARG ASP ARG PHE SEQRES 4 A 136 GLN ILE LEU THR ALA HIS ASP PRO SER ASP ILE ILE ALA SEQRES 5 A 136 GLU ASP ALA GLY LEU GLY PHE GLN ARG SER PRO SER VAL SEQRES 6 A 136 VAL ILE ILE HIS VAL PHE THR GLN ALA GLY ARG THR ILE SEQRES 7 A 136 GLU THR LYS GLN ARG VAL PHE ALA ALA ILE THR GLU SER SEQRES 8 A 136 LEU ALA PRO ILE GLY VAL ALA GLY SER ASP VAL PHE ILE SEQRES 9 A 136 ALA ILE THR GLU ASN ALA PRO HIS ASP TRP SER PHE GLY SEQRES 10 A 136 PHE GLY SER ALA GLN TYR VAL THR GLY GLU LEU ALA ILE SEQRES 11 A 136 PRO ALA THR GLY ALA ALA SEQRES 1 B 136 PRO LEU ILE ARG ILE ASP LEU THR SER ASP ARG SER ARG SEQRES 2 B 136 GLU GLN ARG ARG ALA ILE ALA ASP ALA VAL HIS ASP ALA SEQRES 3 B 136 LEU VAL GLU VAL LEU ALA ILE PRO ALA ARG ASP ARG PHE SEQRES 4 B 136 GLN ILE LEU THR ALA HIS ASP PRO SER ASP ILE ILE ALA SEQRES 5 B 136 GLU ASP ALA GLY LEU GLY PHE GLN ARG SER PRO SER VAL SEQRES 6 B 136 VAL ILE ILE HIS VAL PHE THR GLN ALA GLY ARG THR ILE SEQRES 7 B 136 GLU THR LYS GLN ARG VAL PHE ALA ALA ILE THR GLU SER SEQRES 8 B 136 LEU ALA PRO ILE GLY VAL ALA GLY SER ASP VAL PHE ILE SEQRES 9 B 136 ALA ILE THR GLU ASN ALA PRO HIS ASP TRP SER PHE GLY SEQRES 10 B 136 PHE GLY SER ALA GLN TYR VAL THR GLY GLU LEU ALA ILE SEQRES 11 B 136 PRO ALA THR GLY ALA ALA SEQRES 1 C 136 PRO LEU ILE ARG ILE ASP LEU THR SER ASP ARG SER ARG SEQRES 2 C 136 GLU GLN ARG ARG ALA ILE ALA ASP ALA VAL HIS ASP ALA SEQRES 3 C 136 LEU VAL GLU VAL LEU ALA ILE PRO ALA ARG ASP ARG PHE SEQRES 4 C 136 GLN ILE LEU THR ALA HIS ASP PRO SER ASP ILE ILE ALA SEQRES 5 C 136 GLU ASP ALA GLY LEU GLY PHE GLN ARG SER PRO SER VAL SEQRES 6 C 136 VAL ILE ILE HIS VAL PHE THR GLN ALA GLY ARG THR ILE SEQRES 7 C 136 GLU THR LYS GLN ARG VAL PHE ALA ALA ILE THR GLU SER SEQRES 8 C 136 LEU ALA PRO ILE GLY VAL ALA GLY SER ASP VAL PHE ILE SEQRES 9 C 136 ALA ILE THR GLU ASN ALA PRO HIS ASP TRP SER PHE GLY SEQRES 10 C 136 PHE GLY SER ALA GLN TYR VAL THR GLY GLU LEU ALA ILE SEQRES 11 C 136 PRO ALA THR GLY ALA ALA SEQRES 1 D 136 PRO LEU ILE ARG ILE ASP LEU THR SER ASP ARG SER ARG SEQRES 2 D 136 GLU GLN ARG ARG ALA ILE ALA ASP ALA VAL HIS ASP ALA SEQRES 3 D 136 LEU VAL GLU VAL LEU ALA ILE PRO ALA ARG ASP ARG PHE SEQRES 4 D 136 GLN ILE LEU THR ALA HIS ASP PRO SER ASP ILE ILE ALA SEQRES 5 D 136 GLU ASP ALA GLY LEU GLY PHE GLN ARG SER PRO SER VAL SEQRES 6 D 136 VAL ILE ILE HIS VAL PHE THR GLN ALA GLY ARG THR ILE SEQRES 7 D 136 GLU THR LYS GLN ARG VAL PHE ALA ALA ILE THR GLU SER SEQRES 8 D 136 LEU ALA PRO ILE GLY VAL ALA GLY SER ASP VAL PHE ILE SEQRES 9 D 136 ALA ILE THR GLU ASN ALA PRO HIS ASP TRP SER PHE GLY SEQRES 10 D 136 PHE GLY SER ALA GLN TYR VAL THR GLY GLU LEU ALA ILE SEQRES 11 D 136 PRO ALA THR GLY ALA ALA SEQRES 1 E 136 PRO LEU ILE ARG ILE ASP LEU THR SER ASP ARG SER ARG SEQRES 2 E 136 GLU GLN ARG ARG ALA ILE ALA ASP ALA VAL HIS ASP ALA SEQRES 3 E 136 LEU VAL GLU VAL LEU ALA ILE PRO ALA ARG ASP ARG PHE SEQRES 4 E 136 GLN ILE LEU THR ALA HIS ASP PRO SER ASP ILE ILE ALA SEQRES 5 E 136 GLU ASP ALA GLY LEU GLY PHE GLN ARG SER PRO SER VAL SEQRES 6 E 136 VAL ILE ILE HIS VAL PHE THR GLN ALA GLY ARG THR ILE SEQRES 7 E 136 GLU THR LYS GLN ARG VAL PHE ALA ALA ILE THR GLU SER SEQRES 8 E 136 LEU ALA PRO ILE GLY VAL ALA GLY SER ASP VAL PHE ILE SEQRES 9 E 136 ALA ILE THR GLU ASN ALA PRO HIS ASP TRP SER PHE GLY SEQRES 10 E 136 PHE GLY SER ALA GLN TYR VAL THR GLY GLU LEU ALA ILE SEQRES 11 E 136 PRO ALA THR GLY ALA ALA HET PR6 A 150 6 HET PR6 B 150 6 HET PR6 C 150 6 HET PR6 D 150 6 HET PR6 E 150 6 HETNAM PR6 3-CHLORO-3-OXOPROPANOIC ACID FORMUL 6 PR6 5(C3 H3 CL O3) FORMUL 11 HOH *486(H2 O) HELIX 1 1 ARG A 13 ALA A 32 1 20 HELIX 2 2 ASP A 46 SER A 48 5 3 HELIX 3 3 THR A 77 ALA A 93 1 17 HELIX 4 4 ALA A 98 SER A 100 5 3 HELIX 5 5 ALA A 110 HIS A 112 5 3 HELIX 6 6 ALA A 121 GLY A 126 1 6 HELIX 7 7 SER B 12 ALA B 32 1 21 HELIX 8 8 ASP B 46 SER B 48 5 3 HELIX 9 9 THR B 77 ALA B 93 1 17 HELIX 10 10 ALA B 98 SER B 100 5 3 HELIX 11 11 ALA B 110 HIS B 112 5 3 HELIX 12 12 ARG C 13 ALA C 32 1 20 HELIX 13 13 ASP C 46 SER C 48 5 3 HELIX 14 14 THR C 77 ALA C 93 1 17 HELIX 15 15 PRO C 94 GLY C 96 5 3 HELIX 16 16 ALA C 98 SER C 100 5 3 HELIX 17 17 ALA C 110 HIS C 112 5 3 HELIX 18 18 ALA C 121 GLY C 126 1 6 HELIX 19 19 SER D 12 ALA D 32 1 21 HELIX 20 20 ASP D 46 ILE D 50 5 5 HELIX 21 21 THR D 77 ALA D 93 1 17 HELIX 22 22 PRO D 94 GLY D 96 5 3 HELIX 23 23 ALA D 98 SER D 100 5 3 HELIX 24 24 ALA D 110 TRP D 114 5 5 HELIX 25 25 ALA D 121 GLY D 126 1 6 HELIX 26 26 SER E 12 ALA E 32 1 21 HELIX 27 27 THR E 77 ALA E 93 1 17 HELIX 28 28 ALA E 98 SER E 100 5 3 HELIX 29 29 ALA E 110 TRP E 114 5 5 HELIX 30 30 ALA E 121 GLY E 126 1 6 SHEET 1 A 6 TRP B 114 SER B 115 0 SHEET 2 A 6 VAL A 102 ASN A 109 -1 N ILE A 104 O SER B 115 SHEET 3 A 6 VAL A 66 GLN A 73 1 N VAL A 70 O ALA A 105 SHEET 4 A 6 LEU A 2 THR A 8 -1 N ASP A 6 O ILE A 67 SHEET 5 A 6 PHE A 39 HIS A 45 1 O THR A 43 N ILE A 5 SHEET 6 A 6 ILE C 50 ALA C 52 -1 O ILE C 51 N GLN A 40 SHEET 1 B 6 ILE A 50 ALA A 52 0 SHEET 2 B 6 PHE B 39 HIS B 45 -1 O GLN B 40 N ILE A 51 SHEET 3 B 6 LEU B 2 THR B 8 1 N ILE B 5 O ILE B 41 SHEET 4 B 6 VAL B 66 GLN B 73 -1 O PHE B 71 N LEU B 2 SHEET 5 B 6 VAL B 102 ASN B 109 1 O THR B 107 N VAL B 70 SHEET 6 B 6 TRP C 114 SER C 115 -1 O SER C 115 N ILE B 104 SHEET 1 C 6 TRP A 114 SER A 115 0 SHEET 2 C 6 VAL C 102 ASN C 109 -1 O ILE C 104 N SER A 115 SHEET 3 C 6 VAL C 66 GLN C 73 1 N VAL C 70 O ALA C 105 SHEET 4 C 6 LEU C 2 THR C 8 -1 N ASP C 6 O ILE C 67 SHEET 5 C 6 PHE C 39 HIS C 45 1 O THR C 43 N ILE C 5 SHEET 6 C 6 ILE B 50 ALA B 52 -1 N ILE B 51 O GLN C 40 SHEET 1 D 4 PHE D 39 HIS D 45 0 SHEET 2 D 4 LEU D 2 THR D 8 1 N ILE D 3 O ILE D 41 SHEET 3 D 4 VAL D 66 GLN D 73 -1 O PHE D 71 N LEU D 2 SHEET 4 D 4 VAL D 102 ASN D 109 1 O ALA D 105 N VAL D 70 SHEET 1 E 4 PHE E 39 HIS E 45 0 SHEET 2 E 4 LEU E 2 THR E 8 1 N ILE E 5 O ILE E 41 SHEET 3 E 4 VAL E 66 GLN E 73 -1 O ILE E 67 N ASP E 6 SHEET 4 E 4 VAL E 102 ASN E 109 1 O ALA E 105 N VAL E 70 LINK N PRO A 1 CAH PR6 A 150 1555 1555 1.35 LINK N PRO B 1 CAH PR6 B 150 1555 1555 1.41 LINK N PRO C 1 CAH PR6 C 150 1555 1555 1.38 LINK N PRO D 1 CAH PR6 D 150 1555 1555 1.37 LINK N PRO E 1 CAH PR6 E 150 1555 1555 1.34 SITE 1 AC1 6 PRO A 1 ASP A 37 THR A 72 GLN A 73 SITE 2 AC1 6 TRP A 114 TYR A 123 SITE 1 AC2 6 PRO B 1 ASP B 37 THR B 72 GLN B 73 SITE 2 AC2 6 TRP B 114 TYR B 123 SITE 1 AC3 6 PRO C 1 ASP C 37 THR C 72 GLN C 73 SITE 2 AC3 6 TRP C 114 TYR C 123 SITE 1 AC4 6 PRO D 1 ASP D 37 THR D 72 GLN D 73 SITE 2 AC4 6 TRP D 114 TYR D 123 SITE 1 AC5 6 PRO E 1 ASP E 37 THR E 72 GLN E 73 SITE 2 AC5 6 TRP E 114 TYR E 123 CRYST1 144.227 144.227 144.227 90.00 90.00 90.00 P 21 3 60 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006934 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006934 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006934 0.00000