HEADER MOTOR PROTEIN 19-APR-10 3MMI TITLE CRYSTAL STRUCTURE OF THE GLOBULAR TAIL OF MYO4P COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN-4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: MYO4P GLOBULAR TAIL (UNP RESIDUES 1091-1471); COMPND 5 SYNONYM: SWI5-DEPENDENT HO EXPRESSION PROTEIN 1, YAL029C; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: FUN22, MYO4, SHE1, YAL029C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-DE3*; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1 KEYWDS GLOBULAR TAIL, TYPE V MYOSIN, DILUTE DOMAIN, MOTOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.HEUCK,D.NIESSING REVDAT 2 21-FEB-24 3MMI 1 SEQADV REVDAT 1 12-MAY-10 3MMI 0 JRNL AUTH A.HEUCK,I.FETKA,D.N.BREWER,D.HULS,M.MUNSON,R.P.JANSEN, JRNL AUTH 2 D.NIESSING JRNL TITL THE STRUCTURE OF THE MYO4P GLOBULAR TAIL AND ITS FUNCTION IN JRNL TITL 2 ASH1 MRNA LOCALIZATION. JRNL REF J.CELL BIOL. V. 189 497 2010 JRNL REFN ISSN 0021-9525 JRNL PMID 20439999 JRNL DOI 10.1083/JCB.201002076 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 35353 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.254 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1855 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2543 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5453 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : -0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.348 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.244 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.161 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.532 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.878 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5273 ; 0.030 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7157 ; 2.170 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 664 ; 7.842 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 210 ;42.157 ;25.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 868 ;19.583 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;20.154 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 853 ; 0.165 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3868 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3333 ; 2.272 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5363 ; 3.698 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1940 ; 5.221 ; 4.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1794 ; 7.396 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MMI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058730. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35353 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 96.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.38200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES, 20% PEG 3350, 150MM REMARK 280 HCO2NA, 10 MM K2PT(CN)4, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.73800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.84150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.49450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.84150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.73800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 60.49450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1086 REMARK 465 PRO A 1087 REMARK 465 LEU A 1088 REMARK 465 GLY A 1089 REMARK 465 SER A 1090 REMARK 465 LEU A 1091 REMARK 465 VAL A 1092 REMARK 465 ASN A 1093 REMARK 465 VAL A 1094 REMARK 465 ILE A 1095 REMARK 465 ARG A 1096 REMARK 465 ARG A 1097 REMARK 465 GLU A 1098 REMARK 465 SER A 1099 REMARK 465 GLY A 1100 REMARK 465 ASN A 1101 REMARK 465 PRO A 1102 REMARK 465 ASP A 1134 REMARK 465 ASN A 1135 REMARK 465 VAL A 1136 REMARK 465 GLU A 1208 REMARK 465 ALA A 1209 REMARK 465 ASN A 1210 REMARK 465 GLY A 1211 REMARK 465 GLY A 1212 REMARK 465 ASP A 1213 REMARK 465 GLU A 1214 REMARK 465 LYS A 1215 REMARK 465 ASN A 1399 REMARK 465 LYS A 1400 REMARK 465 GLY A 1401 REMARK 465 GLU A 1402 REMARK 465 ALA A 1403 REMARK 465 TYR A 1445 REMARK 465 ASP A 1446 REMARK 465 THR A 1447 REMARK 465 SER A 1448 REMARK 465 ALA A 1449 REMARK 465 ILE A 1450 REMARK 465 THR A 1451 REMARK 465 GLN A 1452 REMARK 465 ASN A 1453 REMARK 465 SER A 1454 REMARK 465 ASN A 1455 REMARK 465 THR A 1456 REMARK 465 GLU A 1457 REMARK 465 GLY A 1458 REMARK 465 LEU A 1459 REMARK 465 ALA A 1460 REMARK 465 THR A 1461 REMARK 465 VAL A 1462 REMARK 465 SER A 1463 REMARK 465 LYS A 1464 REMARK 465 ILE A 1465 REMARK 465 ILE A 1466 REMARK 465 LYS A 1467 REMARK 465 LEU A 1468 REMARK 465 ASP A 1469 REMARK 465 ARG A 1470 REMARK 465 LYS A 1471 REMARK 465 GLY B 1086 REMARK 465 PRO B 1087 REMARK 465 LEU B 1088 REMARK 465 GLY B 1089 REMARK 465 SER B 1090 REMARK 465 LEU B 1091 REMARK 465 VAL B 1092 REMARK 465 ASN B 1093 REMARK 465 VAL B 1094 REMARK 465 ILE B 1095 REMARK 465 ARG B 1096 REMARK 465 ARG B 1097 REMARK 465 GLU B 1098 REMARK 465 SER B 1099 REMARK 465 GLY B 1100 REMARK 465 GLU B 1208 REMARK 465 ALA B 1209 REMARK 465 ASN B 1210 REMARK 465 GLY B 1211 REMARK 465 GLY B 1212 REMARK 465 ASP B 1213 REMARK 465 GLU B 1214 REMARK 465 LYS B 1400 REMARK 465 GLY B 1401 REMARK 465 GLU B 1402 REMARK 465 ASP B 1446 REMARK 465 THR B 1447 REMARK 465 SER B 1448 REMARK 465 ALA B 1449 REMARK 465 ILE B 1450 REMARK 465 THR B 1451 REMARK 465 GLN B 1452 REMARK 465 ASN B 1453 REMARK 465 SER B 1454 REMARK 465 ASN B 1455 REMARK 465 THR B 1456 REMARK 465 GLU B 1457 REMARK 465 ASP B 1469 REMARK 465 ARG B 1470 REMARK 465 LYS B 1471 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A 1103 CB CG OD1 OD2 REMARK 480 LEU A 1104 CG CD1 CD2 REMARK 480 LEU A 1105 CG CD1 CD2 REMARK 480 LEU A 1111 CB CG CD1 CD2 REMARK 480 LEU A 1116 CB CG CD1 CD2 REMARK 480 GLU A 1117 CG CD OE1 OE2 REMARK 480 LYS A 1125 CB CG CD CE NZ REMARK 480 GLN A 1158 CD OE1 NE2 REMARK 480 LYS A 1161 CG CD CE NZ REMARK 480 LYS A 1165 CG CD CE NZ REMARK 480 LEU A 1168 CD1 CD2 REMARK 480 LYS A 1179 CB CG CD CE NZ REMARK 480 GLU A 1181 CG REMARK 480 LYS A 1217 CD CE NZ REMARK 480 LYS A 1232 CD CE NZ REMARK 480 LYS A 1236 CD CE NZ REMARK 480 LYS A 1247 CD CE NZ REMARK 480 HIS A 1248 CG ND1 CD2 CE1 NE2 REMARK 480 LYS A 1263 CD CE NZ REMARK 480 LYS A 1266 CD CE NZ REMARK 480 GLU A 1271 CD OE1 OE2 REMARK 480 LYS A 1275 CG CD CE NZ REMARK 480 LYS A 1289 CD CE NZ REMARK 480 LYS A 1306 CE NZ REMARK 480 ARG A 1333 CD NE CZ NH1 NH2 REMARK 480 ARG A 1350 CD NE CZ NH1 NH2 REMARK 480 LYS A 1366 CG CD REMARK 480 LYS A 1396 CG CD CE NZ REMARK 480 GLU A 1408 CD OE1 OE2 REMARK 480 ARG A 1419 CD NE CZ NH1 REMARK 480 GLU A 1420 CG CD OE1 REMARK 480 LYS A 1440 CD CE NZ REMARK 480 ARG A 1444 CD NE CZ NH1 NH2 REMARK 480 ASN B 1101 CG OD1 ND2 REMARK 480 LEU B 1105 CD1 CD2 REMARK 480 MET B 1109 CE REMARK 480 LEU B 1111 CG CD1 CD2 REMARK 480 ASN B 1112 OD1 ND2 REMARK 480 CYS B 1113 CB SG REMARK 480 LEU B 1116 CG CD1 CD2 REMARK 480 LYS B 1125 CB CG CD CE NZ REMARK 480 GLU B 1130 CG CD OE1 OE2 REMARK 480 VAL B 1131 CB CG1 CG2 REMARK 480 ASN B 1132 CB CG OD1 ND2 REMARK 480 ASP B 1134 CB REMARK 480 ASN B 1135 CB CG OD1 ND2 REMARK 480 ARG B 1152 NE CZ NH1 NH2 REMARK 480 LEU B 1155 CD2 REMARK 480 LYS B 1161 CG CD CE NZ REMARK 480 LYS B 1165 CD CE NZ REMARK 480 LEU B 1168 CD1 CD2 REMARK 480 MET B 1175 CB CG SD CE REMARK 480 LYS B 1179 CB CG CD CE NZ REMARK 480 GLU B 1181 CG CD OE1 OE2 REMARK 480 LYS B 1204 CG CD CE NZ REMARK 480 LEU B 1206 CB CG CD1 CD2 REMARK 480 LYS B 1215 CB CG CD CE NZ REMARK 480 ASP B 1216 CG OD1 OD2 REMARK 480 LYS B 1217 CG CD CE NZ REMARK 480 LEU B 1218 CD1 CD2 REMARK 480 LYS B 1232 NZ REMARK 480 LYS B 1236 CD CE NZ REMARK 480 LYS B 1247 CD CE NZ REMARK 480 GLU B 1262 CD OE1 REMARK 480 LYS B 1266 CD CE NZ REMARK 480 LYS B 1272 CG CD CE NZ REMARK 480 GLU B 1282 CD OE1 OE2 REMARK 480 LYS B 1289 NZ REMARK 480 MET B 1311 CE REMARK 480 LYS B 1319 CE NZ REMARK 480 LYS B 1326 NZ REMARK 480 GLU B 1336 CG CD OE1 OE2 REMARK 480 GLU B 1343 CB CG REMARK 480 GLU B 1347 CB CG CD OE1 OE2 REMARK 480 GLN B 1358 OE1 NE2 REMARK 480 SER B 1368 OG REMARK 480 ASN B 1369 CB REMARK 480 LEU B 1370 CG CD1 CD2 REMARK 480 ASN B 1371 CG OD1 ND2 REMARK 480 LYS B 1374 CE NZ REMARK 480 PHE B 1379 CD1 CE1 REMARK 480 LYS B 1396 CB CG CD CE NZ REMARK 480 GLU B 1420 CD OE1 OE2 REMARK 480 LEU B 1424 CG CD1 CD2 REMARK 480 LYS B 1440 CB CG CD CE NZ REMARK 480 ARG B 1444 CG CD NE CZ NH1 NH2 REMARK 480 TYR B 1445 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 LEU B 1459 CB CG CD1 CD2 REMARK 480 LYS B 1464 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 193 O HOH A 194 1.98 REMARK 500 CD LYS B 1179 NE2 HIS B 1248 2.11 REMARK 500 CE LYS B 1374 O HOH B 11 2.14 REMARK 500 OE1 GLU B 1330 NH1 ARG B 1333 2.19 REMARK 500 O CYS B 1320 NZ LYS B 1394 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A1117 CB GLU A1117 CG -0.196 REMARK 500 LYS A1247 CG LYS A1247 CD 0.217 REMARK 500 GLU A1271 CG GLU A1271 CD 0.111 REMARK 500 GLU A1347 CB GLU A1347 CG 0.133 REMARK 500 ARG A1350 CG ARG A1350 CD -0.171 REMARK 500 VAL A1416 CA VAL A1416 CB 0.137 REMARK 500 SER A1433 CB SER A1433 OG -0.082 REMARK 500 LYS B1125 CA LYS B1125 CB -0.195 REMARK 500 PHE B1234 CZ PHE B1234 CE2 0.115 REMARK 500 GLU B1262 CG GLU B1262 CD 0.134 REMARK 500 LYS B1289 CE LYS B1289 NZ -0.167 REMARK 500 GLU B1336 CB GLU B1336 CG -0.231 REMARK 500 SER B1368 CB SER B1368 OG 0.088 REMARK 500 VAL B1416 CA VAL B1416 CB 0.130 REMARK 500 LEU B1468 C LEU B1468 O 0.122 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A1128 CB - CA - C ANGL. DEV. = -12.6 DEGREES REMARK 500 VAL A1128 N - CA - C ANGL. DEV. = -24.4 DEGREES REMARK 500 VAL A1131 CB - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 ILE A1255 CG1 - CB - CG2 ANGL. DEV. = -13.9 DEGREES REMARK 500 GLU A1330 OE1 - CD - OE2 ANGL. DEV. = -8.9 DEGREES REMARK 500 LEU A1370 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 MET B1175 N - CA - CB ANGL. DEV. = -12.6 DEGREES REMARK 500 LYS B1179 CB - CA - C ANGL. DEV. = 14.3 DEGREES REMARK 500 LEU B1218 CB - CG - CD2 ANGL. DEV. = -12.6 DEGREES REMARK 500 HIS B1442 CB - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A1131 -172.27 -69.21 REMARK 500 LYS A1179 -32.73 -34.95 REMARK 500 PRO A1344 21.93 -69.72 REMARK 500 ARG A1345 -34.39 -131.80 REMARK 500 ASP A1348 105.78 -163.21 REMARK 500 TYR B1122 -67.81 -127.68 REMARK 500 ASN B1127 56.11 -107.17 REMARK 500 VAL B1128 38.67 -95.40 REMARK 500 VAL B1131 42.08 -79.76 REMARK 500 ASP B1134 11.62 -151.10 REMARK 500 ASN B1135 50.55 -107.66 REMARK 500 LEU B1137 31.28 -90.53 REMARK 500 LEU B1155 66.32 -101.35 REMARK 500 LYS B1366 64.61 30.80 REMARK 500 SER B1368 21.62 -149.28 REMARK 500 PHE B1377 -38.81 -33.01 REMARK 500 HIS B1442 47.27 75.63 REMARK 500 ALA B1460 -75.47 -82.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 1440 ASN B 1441 31.64 REMARK 500 REMARK 500 REMARK: NULL DBREF 3MMI A 1091 1471 UNP P32492 MYO4_YEAST 1091 1471 DBREF 3MMI B 1091 1471 UNP P32492 MYO4_YEAST 1091 1471 SEQADV 3MMI GLY A 1086 UNP P32492 EXPRESSION TAG SEQADV 3MMI PRO A 1087 UNP P32492 EXPRESSION TAG SEQADV 3MMI LEU A 1088 UNP P32492 EXPRESSION TAG SEQADV 3MMI GLY A 1089 UNP P32492 EXPRESSION TAG SEQADV 3MMI SER A 1090 UNP P32492 EXPRESSION TAG SEQADV 3MMI GLY B 1086 UNP P32492 EXPRESSION TAG SEQADV 3MMI PRO B 1087 UNP P32492 EXPRESSION TAG SEQADV 3MMI LEU B 1088 UNP P32492 EXPRESSION TAG SEQADV 3MMI GLY B 1089 UNP P32492 EXPRESSION TAG SEQADV 3MMI SER B 1090 UNP P32492 EXPRESSION TAG SEQRES 1 A 386 GLY PRO LEU GLY SER LEU VAL ASN VAL ILE ARG ARG GLU SEQRES 2 A 386 SER GLY ASN PRO ASP LEU LEU GLU LEU LEU MET ASP LEU SEQRES 3 A 386 ASN CYS TYR THR LEU GLU VAL THR GLU GLY TYR LEU LYS SEQRES 4 A 386 LYS VAL ASN VAL THR GLU VAL ASN GLY ASP ASN VAL LEU SEQRES 5 A 386 GLY PRO ILE HIS VAL ILE THR THR VAL VAL SER SER LEU SEQRES 6 A 386 VAL ARG ASN GLY LEU LEU ILE GLN SER SER LYS PHE ILE SEQRES 7 A 386 SER LYS VAL LEU LEU THR VAL GLU SER ILE VAL MET SER SEQRES 8 A 386 LEU PRO LYS ASP GLU THR MET LEU GLY GLY ILE PHE TRP SEQRES 9 A 386 LEU SER ASN LEU SER ARG LEU PRO ALA PHE ALA ALA ASN SEQRES 10 A 386 GLN LYS THR LEU TYR GLU ALA ASN GLY GLY ASP GLU LYS SEQRES 11 A 386 ASP LYS LEU THR LEU ILE TYR LEU ASN ASP LEU GLU ASN SEQRES 12 A 386 GLU THR LEU LYS VAL PHE ASP LYS ILE TYR SER THR TRP SEQRES 13 A 386 LEU VAL LYS PHE MET LYS HIS ALA SER ALA HIS ILE GLU SEQRES 14 A 386 ILE PHE ASP MET VAL LEU ASN GLU LYS LEU PHE LYS ASN SEQRES 15 A 386 SER GLY ASP GLU LYS PHE ALA LYS LEU PHE THR PHE LEU SEQRES 16 A 386 ASN GLU PHE ASP ALA VAL LEU CYS LYS PHE GLN VAL VAL SEQRES 17 A 386 ASP SER MET HIS THR LYS ILE PHE ASN ASP THR LEU LYS SEQRES 18 A 386 TYR LEU ASN VAL MET LEU PHE ASN ASP LEU ILE THR LYS SEQRES 19 A 386 CYS PRO ALA LEU ASN TRP LYS TYR GLY TYR GLU VAL ASP SEQRES 20 A 386 ARG ASN ILE GLU ARG LEU VAL SER TRP PHE GLU PRO ARG SEQRES 21 A 386 ILE GLU ASP VAL ARG PRO ASN LEU ILE GLN ILE ILE GLN SEQRES 22 A 386 ALA VAL LYS ILE LEU GLN LEU LYS ILE SER ASN LEU ASN SEQRES 23 A 386 GLU PHE LYS LEU LEU PHE ASP PHE TRP TYR ALA LEU ASN SEQRES 24 A 386 PRO ALA GLN ILE GLN ALA ILE LEU LEU LYS TYR LYS PRO SEQRES 25 A 386 ALA ASN LYS GLY GLU ALA GLY VAL PRO ASN GLU ILE LEU SEQRES 26 A 386 ASN TYR LEU ALA ASN VAL ILE LYS ARG GLU ASN LEU SER SEQRES 27 A 386 LEU PRO GLY LYS MET GLU ILE MET LEU SER ALA GLN PHE SEQRES 28 A 386 ASP SER ALA LYS ASN HIS LEU ARG TYR ASP THR SER ALA SEQRES 29 A 386 ILE THR GLN ASN SER ASN THR GLU GLY LEU ALA THR VAL SEQRES 30 A 386 SER LYS ILE ILE LYS LEU ASP ARG LYS SEQRES 1 B 386 GLY PRO LEU GLY SER LEU VAL ASN VAL ILE ARG ARG GLU SEQRES 2 B 386 SER GLY ASN PRO ASP LEU LEU GLU LEU LEU MET ASP LEU SEQRES 3 B 386 ASN CYS TYR THR LEU GLU VAL THR GLU GLY TYR LEU LYS SEQRES 4 B 386 LYS VAL ASN VAL THR GLU VAL ASN GLY ASP ASN VAL LEU SEQRES 5 B 386 GLY PRO ILE HIS VAL ILE THR THR VAL VAL SER SER LEU SEQRES 6 B 386 VAL ARG ASN GLY LEU LEU ILE GLN SER SER LYS PHE ILE SEQRES 7 B 386 SER LYS VAL LEU LEU THR VAL GLU SER ILE VAL MET SER SEQRES 8 B 386 LEU PRO LYS ASP GLU THR MET LEU GLY GLY ILE PHE TRP SEQRES 9 B 386 LEU SER ASN LEU SER ARG LEU PRO ALA PHE ALA ALA ASN SEQRES 10 B 386 GLN LYS THR LEU TYR GLU ALA ASN GLY GLY ASP GLU LYS SEQRES 11 B 386 ASP LYS LEU THR LEU ILE TYR LEU ASN ASP LEU GLU ASN SEQRES 12 B 386 GLU THR LEU LYS VAL PHE ASP LYS ILE TYR SER THR TRP SEQRES 13 B 386 LEU VAL LYS PHE MET LYS HIS ALA SER ALA HIS ILE GLU SEQRES 14 B 386 ILE PHE ASP MET VAL LEU ASN GLU LYS LEU PHE LYS ASN SEQRES 15 B 386 SER GLY ASP GLU LYS PHE ALA LYS LEU PHE THR PHE LEU SEQRES 16 B 386 ASN GLU PHE ASP ALA VAL LEU CYS LYS PHE GLN VAL VAL SEQRES 17 B 386 ASP SER MET HIS THR LYS ILE PHE ASN ASP THR LEU LYS SEQRES 18 B 386 TYR LEU ASN VAL MET LEU PHE ASN ASP LEU ILE THR LYS SEQRES 19 B 386 CYS PRO ALA LEU ASN TRP LYS TYR GLY TYR GLU VAL ASP SEQRES 20 B 386 ARG ASN ILE GLU ARG LEU VAL SER TRP PHE GLU PRO ARG SEQRES 21 B 386 ILE GLU ASP VAL ARG PRO ASN LEU ILE GLN ILE ILE GLN SEQRES 22 B 386 ALA VAL LYS ILE LEU GLN LEU LYS ILE SER ASN LEU ASN SEQRES 23 B 386 GLU PHE LYS LEU LEU PHE ASP PHE TRP TYR ALA LEU ASN SEQRES 24 B 386 PRO ALA GLN ILE GLN ALA ILE LEU LEU LYS TYR LYS PRO SEQRES 25 B 386 ALA ASN LYS GLY GLU ALA GLY VAL PRO ASN GLU ILE LEU SEQRES 26 B 386 ASN TYR LEU ALA ASN VAL ILE LYS ARG GLU ASN LEU SER SEQRES 27 B 386 LEU PRO GLY LYS MET GLU ILE MET LEU SER ALA GLN PHE SEQRES 28 B 386 ASP SER ALA LYS ASN HIS LEU ARG TYR ASP THR SER ALA SEQRES 29 B 386 ILE THR GLN ASN SER ASN THR GLU GLY LEU ALA THR VAL SEQRES 30 B 386 SER LYS ILE ILE LYS LEU ASP ARG LYS FORMUL 3 HOH *170(H2 O) HELIX 1 1 ASP A 1103 ASP A 1110 1 8 HELIX 2 2 ASP A 1110 TYR A 1122 1 13 HELIX 3 3 LEU A 1137 ASN A 1153 1 17 HELIX 4 4 LEU A 1155 LEU A 1177 1 23 HELIX 5 5 GLU A 1181 SER A 1194 1 14 HELIX 6 6 ARG A 1195 THR A 1205 1 11 HELIX 7 7 ASP A 1216 GLU A 1254 1 39 HELIX 8 8 GLU A 1254 LEU A 1260 1 7 HELIX 9 9 ASN A 1261 PHE A 1265 5 5 HELIX 10 10 GLY A 1269 PHE A 1290 1 22 HELIX 11 11 VAL A 1293 CYS A 1320 1 28 HELIX 12 12 ASN A 1324 GLU A 1343 1 20 HELIX 13 13 VAL A 1349 ASN A 1352 5 4 HELIX 14 14 LEU A 1353 LEU A 1365 1 13 HELIX 15 15 ASN A 1369 ASP A 1378 1 10 HELIX 16 16 ASN A 1384 LYS A 1394 1 11 HELIX 17 17 PRO A 1406 LEU A 1424 1 19 HELIX 18 18 ALA A 1439 LEU A 1443 5 5 HELIX 19 19 ASN B 1101 ASP B 1110 1 10 HELIX 20 20 ASP B 1110 GLU B 1120 1 11 HELIX 21 21 TYR B 1122 VAL B 1126 5 5 HELIX 22 22 LEU B 1137 ASN B 1153 1 17 HELIX 23 23 LEU B 1155 LEU B 1177 1 23 HELIX 24 24 PRO B 1178 ASP B 1180 5 3 HELIX 25 25 GLU B 1181 SER B 1194 1 14 HELIX 26 26 ARG B 1195 LEU B 1206 1 12 HELIX 27 27 LYS B 1215 ILE B 1253 1 39 HELIX 28 28 GLU B 1254 LEU B 1260 1 7 HELIX 29 29 ASN B 1261 PHE B 1265 5 5 HELIX 30 30 GLY B 1269 PHE B 1290 1 22 HELIX 31 31 VAL B 1293 CYS B 1320 1 28 HELIX 32 32 ASN B 1324 TRP B 1341 1 18 HELIX 33 33 VAL B 1349 ASN B 1352 5 4 HELIX 34 34 LEU B 1353 LYS B 1366 1 14 HELIX 35 35 ASN B 1369 PHE B 1377 1 9 HELIX 36 36 ASN B 1384 LEU B 1393 1 10 HELIX 37 37 PRO B 1406 LEU B 1424 1 19 HELIX 38 38 LEU B 1459 LEU B 1468 1 10 CISPEP 1 THR B 1129 GLU B 1130 0 -9.52 CISPEP 2 ALA B 1398 ASN B 1399 0 -1.85 CRYST1 43.476 120.989 157.683 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023001 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008265 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006342 0.00000