HEADER HYDROLASE 20-APR-10 3MMR TITLE STRUCTURE OF PLASMODIUM FALCIPARUM ARGINASE IN COMPLEX WITH ABH COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 22-411; COMPND 5 EC: 3.5.3.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM 3D7; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: ISOLATE 3D7; SOURCE 5 GENE: PFI0320W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUSTM(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS MALARIA, ABH, LCR, PARASITE, L-ARGININE, BORONIC ACID, KEYWDS 2 METALLOHYDROLASE, BINUCLEAR, MANGANESE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.P.DOWLING,M.ILIES,K.L.OLSZEWSKI,S.PORTUGAL,M.M.MOTA,M.LLINAS, AUTHOR 2 D.W.CHRISTIANSON REVDAT 3 06-SEP-23 3MMR 1 REMARK SEQADV LINK REVDAT 2 14-JUL-10 3MMR 1 JRNL REVDAT 1 23-JUN-10 3MMR 0 JRNL AUTH D.P.DOWLING,M.ILIES,K.L.OLSZEWSKI,S.PORTUGAL,M.M.MOTA, JRNL AUTH 2 M.LLINAS,D.W.CHRISTIANSON JRNL TITL CRYSTAL STRUCTURE OF ARGINASE FROM PLASMODIUM FALCIPARUM AND JRNL TITL 2 IMPLICATIONS FOR L-ARGININE DEPLETION IN MALARIAL INFECTION JRNL TITL 3 . JRNL REF BIOCHEMISTRY V. 49 5600 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20527960 JRNL DOI 10.1021/BI100390Z REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.140 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 30079 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2978 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.1173 - 5.8954 0.99 1424 149 0.1608 0.1787 REMARK 3 2 5.8954 - 4.6823 1.00 1382 153 0.1431 0.1580 REMARK 3 3 4.6823 - 4.0913 1.00 1348 143 0.1205 0.1386 REMARK 3 4 4.0913 - 3.7176 0.99 1337 145 0.1360 0.1430 REMARK 3 5 3.7176 - 3.4514 1.00 1335 146 0.1414 0.1988 REMARK 3 6 3.4514 - 3.2480 0.99 1304 172 0.1591 0.1787 REMARK 3 7 3.2480 - 3.0854 0.99 1324 148 0.1774 0.2451 REMARK 3 8 3.0854 - 2.9512 0.98 1296 139 0.1871 0.2228 REMARK 3 9 2.9512 - 2.8376 0.98 1340 123 0.1659 0.2052 REMARK 3 10 2.8376 - 2.7397 0.98 1271 153 0.1674 0.1875 REMARK 3 11 2.7397 - 2.6541 0.97 1303 146 0.1626 0.1988 REMARK 3 12 2.6541 - 2.5782 0.97 1286 143 0.1581 0.1948 REMARK 3 13 2.5782 - 2.5104 0.97 1273 138 0.1583 0.1980 REMARK 3 14 2.5104 - 2.4491 0.95 1254 155 0.1576 0.1888 REMARK 3 15 2.4491 - 2.3935 0.95 1261 134 0.1691 0.2224 REMARK 3 16 2.3935 - 2.3425 0.95 1290 120 0.1610 0.1990 REMARK 3 17 2.3425 - 2.2957 0.95 1246 126 0.1684 0.2245 REMARK 3 18 2.2957 - 2.2524 0.94 1256 141 0.1567 0.1908 REMARK 3 19 2.2524 - 2.2121 0.92 1191 160 0.1612 0.2144 REMARK 3 20 2.2121 - 2.1747 0.91 1194 139 0.1641 0.2182 REMARK 3 21 2.1747 - 2.1400 0.88 1186 105 0.1685 0.2012 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 42.71 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.11570 REMARK 3 B22 (A**2) : 4.11570 REMARK 3 B33 (A**2) : -8.23150 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2504 REMARK 3 ANGLE : 1.110 3400 REMARK 3 CHIRALITY : 0.078 389 REMARK 3 PLANARITY : 0.004 435 REMARK 3 DIHEDRAL : 17.073 930 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3MMR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058739. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31095 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.140 REMARK 200 RESOLUTION RANGE LOW (A) : 49.354 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1PQ3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M NA/K PHOSPHATE (PH 8.0), VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 56.29700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 32.50309 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 76.30000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 56.29700 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 32.50309 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 76.30000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 56.29700 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 32.50309 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 76.30000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 56.29700 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 32.50309 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 76.30000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 56.29700 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 32.50309 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 76.30000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 56.29700 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 32.50309 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 76.30000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 65.00618 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 152.60000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 65.00618 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 152.60000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 65.00618 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 152.60000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 65.00618 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 152.60000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 65.00618 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 152.60000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 65.00618 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 152.60000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 56.29700 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -97.50926 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 112.59400 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -157.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 56.29700 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -97.50926 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 112.59400 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 112.59400 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 -65.00618 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 76.30000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 -65.00618 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 76.30000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 56.29700 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 32.50309 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 76.30000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 615 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 616 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 706 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 707 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 710 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 LEU A 12 REMARK 465 VAL A 13 REMARK 465 PRO A 14 REMARK 465 ARG A 15 REMARK 465 GLY A 16 REMARK 465 SER A 17 REMARK 465 HIS A 18 REMARK 465 MET A 19 REMARK 465 ALA A 20 REMARK 465 SER A 21 REMARK 465 GLY A 72 REMARK 465 ASP A 73 REMARK 465 ASN A 74 REMARK 465 GLU A 75 REMARK 465 MET A 76 REMARK 465 LYS A 77 REMARK 465 GLN A 78 REMARK 465 GLU A 79 REMARK 465 LYS A 80 REMARK 465 LYS A 81 REMARK 465 THR A 82 REMARK 465 ASN A 83 REMARK 465 ASN A 84 REMARK 465 TYR A 85 REMARK 465 ILE A 86 REMARK 465 ASN A 87 REMARK 465 ASN A 88 REMARK 465 ASN A 89 REMARK 465 ASP A 90 REMARK 465 ASN A 91 REMARK 465 ASN A 92 REMARK 465 ASN A 93 REMARK 465 ASP A 94 REMARK 465 ASN A 95 REMARK 465 ASN A 96 REMARK 465 ASN A 97 REMARK 465 ASP A 98 REMARK 465 ASN A 99 REMARK 465 ASN A 100 REMARK 465 ASN A 101 REMARK 465 ASP A 102 REMARK 465 ASN A 103 REMARK 465 ASN A 104 REMARK 465 ASN A 105 REMARK 465 ASN A 106 REMARK 465 CYS A 107 REMARK 465 TYR A 108 REMARK 465 ILE A 109 REMARK 465 PRO A 110 REMARK 465 ASN A 111 REMARK 465 GLY A 112 REMARK 465 VAL A 113 REMARK 465 ILE A 114 REMARK 465 LYS A 115 REMARK 465 GLU A 116 REMARK 465 LYS A 117 REMARK 465 LYS A 118 REMARK 465 HIS A 119 REMARK 465 ASP A 120 REMARK 465 LEU A 121 REMARK 465 SER A 122 REMARK 465 ASN A 123 REMARK 465 ASN A 124 REMARK 465 LYS A 125 REMARK 465 MET A 126 REMARK 465 ASN A 127 REMARK 465 GLY A 128 REMARK 465 TYR A 129 REMARK 465 VAL A 130 REMARK 465 ASN A 131 REMARK 465 HIS A 132 REMARK 465 ASN A 133 REMARK 465 PHE A 134 REMARK 465 TYR A 135 REMARK 465 GLY A 136 REMARK 465 ASN A 137 REMARK 465 TYR A 138 REMARK 465 GLU A 139 REMARK 465 GLU A 140 REMARK 465 ASN A 141 REMARK 465 ASN A 142 REMARK 465 VAL A 143 REMARK 465 ILE A 144 REMARK 465 SER A 145 REMARK 465 THR A 146 REMARK 465 ASN A 147 REMARK 465 ASP A 148 REMARK 465 LYS A 149 REMARK 465 TYR A 150 REMARK 465 LYS A 151 REMARK 465 ASN A 152 REMARK 465 ASN A 153 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 30 36.57 -73.95 REMARK 500 ARG A 271 -11.44 -157.05 REMARK 500 LYS A 378 -129.95 -119.29 REMARK 500 LYS A 379 119.65 -33.84 REMARK 500 PRO A 386 56.24 -68.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 412 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 193 ND1 REMARK 620 2 ASP A 216 OD1 95.6 REMARK 620 3 ASP A 220 OD2 88.0 84.9 REMARK 620 4 ASP A 323 OD2 103.5 87.0 166.6 REMARK 620 5 ABH A 551 O1 171.4 91.9 88.5 81.1 REMARK 620 6 ABH A 551 O2 110.0 154.3 93.9 88.7 62.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 413 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 216 OD2 REMARK 620 2 HIS A 218 ND1 94.7 REMARK 620 3 ASP A 323 OD2 86.6 173.5 REMARK 620 4 ASP A 325 OD2 135.6 91.3 92.1 REMARK 620 5 ASP A 325 OD1 80.4 97.9 88.6 55.1 REMARK 620 6 ABH A 551 O1 92.2 90.7 82.9 131.7 169.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ABH A 551 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 414 DBREF 3MMR A 22 411 UNP Q8I384 Q8I384_PLAF7 22 411 SEQADV 3MMR MET A -1 UNP Q8I384 EXPRESSION TAG SEQADV 3MMR GLY A 0 UNP Q8I384 EXPRESSION TAG SEQADV 3MMR SER A 1 UNP Q8I384 EXPRESSION TAG SEQADV 3MMR SER A 2 UNP Q8I384 EXPRESSION TAG SEQADV 3MMR HIS A 3 UNP Q8I384 EXPRESSION TAG SEQADV 3MMR HIS A 4 UNP Q8I384 EXPRESSION TAG SEQADV 3MMR HIS A 5 UNP Q8I384 EXPRESSION TAG SEQADV 3MMR HIS A 6 UNP Q8I384 EXPRESSION TAG SEQADV 3MMR HIS A 7 UNP Q8I384 EXPRESSION TAG SEQADV 3MMR HIS A 8 UNP Q8I384 EXPRESSION TAG SEQADV 3MMR SER A 9 UNP Q8I384 EXPRESSION TAG SEQADV 3MMR SER A 10 UNP Q8I384 EXPRESSION TAG SEQADV 3MMR GLY A 11 UNP Q8I384 EXPRESSION TAG SEQADV 3MMR LEU A 12 UNP Q8I384 EXPRESSION TAG SEQADV 3MMR VAL A 13 UNP Q8I384 EXPRESSION TAG SEQADV 3MMR PRO A 14 UNP Q8I384 EXPRESSION TAG SEQADV 3MMR ARG A 15 UNP Q8I384 EXPRESSION TAG SEQADV 3MMR GLY A 16 UNP Q8I384 EXPRESSION TAG SEQADV 3MMR SER A 17 UNP Q8I384 EXPRESSION TAG SEQADV 3MMR HIS A 18 UNP Q8I384 EXPRESSION TAG SEQADV 3MMR MET A 19 UNP Q8I384 EXPRESSION TAG SEQADV 3MMR ALA A 20 UNP Q8I384 EXPRESSION TAG SEQADV 3MMR SER A 21 UNP Q8I384 EXPRESSION TAG SEQRES 1 A 413 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 413 LEU VAL PRO ARG GLY SER HIS MET ALA SER LYS ASN VAL SEQRES 3 A 413 SER ILE ILE GLY SER PRO LEU ALA ALA GLY GLN PRO LEU SEQRES 4 A 413 GLY GLY VAL GLN LEU ALA CYS ASP ASP LEU ARG LYS LEU SEQRES 5 A 413 GLY LEU HIS ASN VAL ILE ASP VAL LEU GLY TRP LYS TYR SEQRES 6 A 413 GLU ASP ILE GLY ASN ILE ASP ASN GLY ASP ASN GLU MET SEQRES 7 A 413 LYS GLN GLU LYS LYS THR ASN ASN TYR ILE ASN ASN ASN SEQRES 8 A 413 ASP ASN ASN ASN ASP ASN ASN ASN ASP ASN ASN ASN ASP SEQRES 9 A 413 ASN ASN ASN ASN CYS TYR ILE PRO ASN GLY VAL ILE LYS SEQRES 10 A 413 GLU LYS LYS HIS ASP LEU SER ASN ASN LYS MET ASN GLY SEQRES 11 A 413 TYR VAL ASN HIS ASN PHE TYR GLY ASN TYR GLU GLU ASN SEQRES 12 A 413 ASN VAL ILE SER THR ASN ASP LYS TYR LYS ASN ASN CYS SEQRES 13 A 413 TYR TYR ASP ASN ILE ARG ASN ILE LYS GLU ILE GLY ILE SEQRES 14 A 413 PHE SER LYS ASN LEU PHE ASP THR MET SER ASN GLU LEU SEQRES 15 A 413 ARG LYS LYS ASN PHE VAL LEU ASN ILE GLY GLY ASP HIS SEQRES 16 A 413 GLY VAL ALA PHE SER SER ILE LEU SER SER LEU GLN MET SEQRES 17 A 413 TYR GLN ASN LEU ARG VAL ILE TRP ILE ASP ALA HIS GLY SEQRES 18 A 413 ASP ILE ASN ILE PRO GLU THR SER PRO SER GLY ASN TYR SEQRES 19 A 413 HIS GLY MET THR LEU ALA HIS THR LEU GLY LEU PHE LYS SEQRES 20 A 413 LYS LYS VAL PRO TYR PHE GLU TRP SER GLU ASN LEU THR SEQRES 21 A 413 TYR LEU LYS PRO GLU ASN THR ALA ILE ILE GLY ILE ARG SEQRES 22 A 413 ASP ILE ASP ALA TYR GLU LYS ILE ILE LEU LYS LYS CYS SEQRES 23 A 413 ASN ILE ASN TYR TYR THR ILE PHE ASP ILE GLU LYS ASN SEQRES 24 A 413 GLY ILE TYR ASN THR ILE CYS THR ALA LEU GLU LYS ILE SEQRES 25 A 413 ASP PRO ASN SER ASN CYS PRO ILE HIS ILE SER LEU ASP SEQRES 26 A 413 ILE ASP SER VAL ASP ASN VAL PHE ALA PRO GLY THR GLY SEQRES 27 A 413 THR VAL ALA LYS GLY GLY LEU ASN TYR ARG GLU ILE ASN SEQRES 28 A 413 LEU LEU MET LYS ILE LEU ALA GLU THR LYS ARG VAL VAL SEQRES 29 A 413 SER MET ASP LEU VAL GLU TYR ASN PRO SER LEU ASP GLU SEQRES 30 A 413 VAL ASP LYS LYS VAL HIS GLY ASP SER LEU PRO ILE LEU SEQRES 31 A 413 ASP ASN ALA THR LYS THR GLY LYS LEU CYS LEU GLU LEU SEQRES 32 A 413 ILE ALA ARG VAL LEU GLY TYR ASP ILE VAL HET MN A 412 1 HET MN A 413 1 HET ABH A 551 13 HET BME A 414 4 HETNAM MN MANGANESE (II) ION HETNAM ABH 2(S)-AMINO-6-BORONOHEXANOIC ACID HETNAM BME BETA-MERCAPTOETHANOL FORMUL 2 MN 2(MN 2+) FORMUL 4 ABH C6 H15 B N O5 1- FORMUL 5 BME C2 H6 O S FORMUL 6 HOH *298(H2 O) HELIX 1 1 GLY A 39 GLN A 41 5 3 HELIX 2 2 LEU A 42 GLY A 51 1 10 HELIX 3 3 GLY A 51 LEU A 59 1 9 HELIX 4 4 ASN A 161 ARG A 181 1 21 HELIX 5 5 ASP A 192 GLY A 194 5 3 HELIX 6 6 VAL A 195 TYR A 207 1 13 HELIX 7 7 ASN A 231 GLY A 234 5 4 HELIX 8 8 MET A 235 LEU A 241 1 7 HELIX 9 9 PHE A 251 GLU A 255 5 5 HELIX 10 10 LYS A 261 GLU A 263 5 3 HELIX 11 11 ASP A 274 CYS A 284 1 11 HELIX 12 12 ILE A 291 ASP A 311 1 21 HELIX 13 13 ASP A 325 VAL A 327 5 3 HELIX 14 14 ASN A 344 THR A 358 1 15 HELIX 15 15 ASN A 370 ASP A 374 5 5 HELIX 16 16 THR A 392 LEU A 406 1 15 SHEET 1 A 8 LYS A 62 ASN A 68 0 SHEET 2 A 8 ASN A 23 SER A 29 1 N GLY A 28 O GLY A 67 SHEET 3 A 8 PHE A 185 GLY A 190 1 O LEU A 187 N SER A 25 SHEET 4 A 8 VAL A 361 VAL A 367 1 O MET A 364 N ASN A 188 SHEET 5 A 8 ILE A 318 ASP A 323 1 N LEU A 322 O ASP A 365 SHEET 6 A 8 ARG A 211 ILE A 215 1 N ILE A 215 O ASP A 323 SHEET 7 A 8 THR A 265 ILE A 270 1 O ILE A 268 N TRP A 214 SHEET 8 A 8 ASN A 287 THR A 290 1 O ASN A 287 N ILE A 267 LINK ND1 HIS A 193 MN MN A 412 1555 1555 2.23 LINK OD1 ASP A 216 MN MN A 412 1555 1555 2.11 LINK OD2 ASP A 216 MN MN A 413 1555 1555 2.19 LINK ND1 HIS A 218 MN MN A 413 1555 1555 2.26 LINK OD2 ASP A 220 MN MN A 412 1555 1555 2.14 LINK OD2 ASP A 323 MN MN A 412 1555 1555 2.31 LINK OD2 ASP A 323 MN MN A 413 1555 1555 2.30 LINK OD2 ASP A 325 MN MN A 413 1555 1555 2.26 LINK OD1 ASP A 325 MN MN A 413 1555 1555 2.48 LINK MN MN A 412 O1 ABH A 551 1555 1555 2.25 LINK MN MN A 412 O2 ABH A 551 1555 1555 2.35 LINK MN MN A 413 O1 ABH A 551 1555 1555 2.18 CISPEP 1 GLY A 190 GLY A 191 0 4.93 CISPEP 2 ASP A 377 LYS A 378 0 -10.74 SITE 1 AC1 6 HIS A 193 ASP A 216 ASP A 220 ASP A 323 SITE 2 AC1 6 MN A 413 ABH A 551 SITE 1 AC2 6 ASP A 216 HIS A 218 ASP A 323 ASP A 325 SITE 2 AC2 6 MN A 412 ABH A 551 SITE 1 AC3 19 HIS A 193 ASP A 216 HIS A 218 ASP A 220 SITE 2 AC3 19 ASN A 222 SER A 229 HIS A 233 ASP A 274 SITE 3 AC3 19 GLU A 277 ASP A 323 ASP A 325 GLU A 368 SITE 4 AC3 19 HIS A 381 MN A 412 MN A 413 HOH A 424 SITE 5 AC3 19 HOH A 445 HOH A 475 HOH A 525 SITE 1 AC4 8 ASP A 328 PHE A 331 GLY A 341 ASN A 344 SITE 2 AC4 8 TYR A 345 ARG A 346 HOH A 435 HOH A 545 CRYST1 112.594 112.594 228.900 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008881 0.005128 0.000000 0.00000 SCALE2 0.000000 0.010255 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004369 0.00000