HEADER OXIDOREDUCTASE 21-APR-10 3MNG TITLE WILD TYPE HUMAN PRXV WITH DTT BOUND AS A COMPETITIVE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXIREDOXIN-5, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEROXIREDOXIN V, PRX-V, PEROXISOMAL ANTIOXIDANT ENZYME, PLP, COMPND 5 THIOREDOXIN REDUCTASE, THIOREDOXIN PEROXIDASE PMP20, ANTIOXIDANT COMPND 6 ENZYME B166, AOEB166, TPX TYPE VI, LIVER TISSUE 2D-PAGE SPOT 71B, ALU COMPND 7 COREPRESSOR 1; COMPND 8 EC: 1.11.1.15; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ACR1, AOEB166, ARC1, PMP20, PRDX5, SBBI10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834/PREP4; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE30-PRX5 KEYWDS PEROXIREDOXIN, PEROXIDASE, PRXV, SUBSTRATE ANALOG, DTT, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.HALL,P.A.KARPLUS REVDAT 3 06-SEP-23 3MNG 1 REMARK SEQADV REVDAT 2 15-SEP-10 3MNG 1 JRNL REVDAT 1 04-AUG-10 3MNG 0 JRNL AUTH A.HALL,D.PARSONAGE,L.B.POOLE,P.A.KARPLUS JRNL TITL STRUCTURAL EVIDENCE THAT PEROXIREDOXIN CATALYTIC POWER IS JRNL TITL 2 BASED ON TRANSITION-STATE STABILIZATION. JRNL REF J.MOL.BIOL. V. 402 194 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20643143 JRNL DOI 10.1016/J.JMB.2010.07.022 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 48609 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.114 REMARK 3 R VALUE (WORKING SET) : 0.113 REMARK 3 FREE R VALUE : 0.136 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2633 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3564 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.1660 REMARK 3 BIN FREE R VALUE SET COUNT : 184 REMARK 3 BIN FREE R VALUE : 0.1890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1190 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 288 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29000 REMARK 3 B22 (A**2) : -0.29000 REMARK 3 B33 (A**2) : 0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.035 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.036 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.016 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.923 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1251 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 861 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1692 ; 2.726 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2118 ; 2.413 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 166 ; 6.104 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 47 ;37.523 ;25.319 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 214 ;10.911 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;11.064 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 195 ; 0.161 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1384 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 228 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 804 ; 3.104 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 334 ; 1.081 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1291 ; 4.357 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 447 ; 6.900 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 398 ; 9.969 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2112 ; 2.816 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MNG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058764. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48609 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 59.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 36.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09400 REMARK 200 FOR THE DATA SET : 30.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.39300 REMARK 200 FOR SHELL : 6.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RIGID BODY REFINEMENT OF REMARK 200 STARTING MODEL REMARK 200 SOFTWARE USED: REFMAC 5.5.0109 REMARK 200 STARTING MODEL: PDB CODE 1HD2 WITH BENZOATE REMOVED REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR CONTAINED 1.6 M AMMONIUM REMARK 280 SULFATE, 0.1 M SODIUM CITRATE, 0.2 M SODIUM/POTASSIUM TARTRATE. REMARK 280 PROTEIN WAS STORED AT 0.8 MM WITH 10 MM DTT., PH 5.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.93350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.65650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.65650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.96675 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.65650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.65650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 92.90025 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.65650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.65650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.96675 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.65650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.65650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 92.90025 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.93350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 67.31300 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 67.31300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 61.93350 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1016 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 ARG A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 27 OE1 - CD - OE2 ANGL. DEV. = -9.9 DEGREES REMARK 500 GLU A 57 OE1 - CD - OE2 ANGL. DEV. = -11.3 DEGREES REMARK 500 LYS A 89 CD - CE - NZ ANGL. DEV. = 15.3 DEGREES REMARK 500 LYS A 93 CD - CE - NZ ANGL. DEV. = 14.4 DEGREES REMARK 500 MET A 130 CG - SD - CE ANGL. DEV. = 13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 50 -61.99 -126.14 REMARK 500 ASP A 113 -149.00 -86.26 REMARK 500 ASP A 134 60.15 39.18 REMARK 500 THR A 150 -100.32 -135.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE D1D A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HD2 RELATED DB: PDB REMARK 900 THE SAME PROTEIN BOUND TO BENZOATE AT 1.5 A RESOLUTION. REMARK 900 RELATED ID: 1H4O RELATED DB: PDB REMARK 900 THE SAME PROTEIN BOUND TO BENZOATE AT 2.0 A RESOLUTION. REMARK 900 RELATED ID: 1OC3 RELATED DB: PDB REMARK 900 THE SAME PROTEIN BOUND TO BENZOATE AT 2.0 A RESOLUTION. REMARK 900 RELATED ID: 1URM RELATED DB: PDB REMARK 900 THE C47S MUTANT OF THE SAME PROTEIN BOUND TO BENZOATE AT 1.7 A REMARK 900 RESOLUTION. REMARK 900 RELATED ID: 2VL2 RELATED DB: PDB REMARK 900 THE SAME PROTEIN BOUND TO BENZOATE AT 1.9 A RESOLUTION. REMARK 900 RELATED ID: 2VL3 RELATED DB: PDB REMARK 900 THE SAME PROTEIN AT 1.8 A RESOLUTION. DBREF 3MNG A 1 161 UNP P30044 PRDX5_HUMAN 54 214 SEQADV 3MNG MET A -11 UNP P30044 EXPRESSION TAG SEQADV 3MNG ARG A -10 UNP P30044 EXPRESSION TAG SEQADV 3MNG GLY A -9 UNP P30044 EXPRESSION TAG SEQADV 3MNG SER A -8 UNP P30044 EXPRESSION TAG SEQADV 3MNG HIS A -7 UNP P30044 EXPRESSION TAG SEQADV 3MNG HIS A -6 UNP P30044 EXPRESSION TAG SEQADV 3MNG HIS A -5 UNP P30044 EXPRESSION TAG SEQADV 3MNG HIS A -4 UNP P30044 EXPRESSION TAG SEQADV 3MNG HIS A -3 UNP P30044 EXPRESSION TAG SEQADV 3MNG HIS A -2 UNP P30044 EXPRESSION TAG SEQADV 3MNG GLY A -1 UNP P30044 EXPRESSION TAG SEQADV 3MNG SER A 0 UNP P30044 EXPRESSION TAG SEQRES 1 A 173 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ALA SEQRES 2 A 173 PRO ILE LYS VAL GLY ASP ALA ILE PRO ALA VAL GLU VAL SEQRES 3 A 173 PHE GLU GLY GLU PRO GLY ASN LYS VAL ASN LEU ALA GLU SEQRES 4 A 173 LEU PHE LYS GLY LYS LYS GLY VAL LEU PHE GLY VAL PRO SEQRES 5 A 173 GLY ALA PHE THR PRO GLY CYS SER LYS THR HIS LEU PRO SEQRES 6 A 173 GLY PHE VAL GLU GLN ALA GLU ALA LEU LYS ALA LYS GLY SEQRES 7 A 173 VAL GLN VAL VAL ALA CYS LEU SER VAL ASN ASP ALA PHE SEQRES 8 A 173 VAL THR GLY GLU TRP GLY ARG ALA HIS LYS ALA GLU GLY SEQRES 9 A 173 LYS VAL ARG LEU LEU ALA ASP PRO THR GLY ALA PHE GLY SEQRES 10 A 173 LYS GLU THR ASP LEU LEU LEU ASP ASP SER LEU VAL SER SEQRES 11 A 173 ILE PHE GLY ASN ARG ARG LEU LYS ARG PHE SER MET VAL SEQRES 12 A 173 VAL GLN ASP GLY ILE VAL LYS ALA LEU ASN VAL GLU PRO SEQRES 13 A 173 ASP GLY THR GLY LEU THR CYS SER LEU ALA PRO ASN ILE SEQRES 14 A 173 ILE SER GLN LEU HET D1D A 201 8 HET BR A 301 1 HET BR A 302 1 HET BR A 303 1 HET BR A 304 1 HET BR A 305 1 HET BR A 306 1 HET BR A 307 1 HET BR A 308 1 HET GOL A 401 6 HET GOL A 402 6 HETNAM D1D (4S,5S)-1,2-DITHIANE-4,5-DIOL HETNAM BR BROMIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 D1D C4 H8 O2 S2 FORMUL 3 BR 8(BR 1-) FORMUL 11 GOL 2(C3 H8 O3) FORMUL 13 HOH *288(H2 O) HELIX 1 1 LEU A 25 PHE A 29 1 5 HELIX 2 2 THR A 44 THR A 50 1 7 HELIX 3 3 THR A 50 GLN A 58 1 9 HELIX 4 4 GLN A 58 ALA A 64 1 7 HELIX 5 5 ASP A 77 HIS A 88 1 12 HELIX 6 6 GLY A 102 ASP A 109 1 8 HELIX 7 7 LEU A 116 GLY A 121 1 6 HELIX 8 8 LEU A 153 LEU A 161 1 9 SHEET 1 A 2 GLU A 13 PHE A 15 0 SHEET 2 A 2 LYS A 22 ASN A 24 -1 O VAL A 23 N VAL A 14 SHEET 1 B 5 ARG A 95 ALA A 98 0 SHEET 2 B 5 VAL A 69 SER A 74 1 N CYS A 72 O LEU A 97 SHEET 3 B 5 LYS A 33 GLY A 38 1 N PHE A 37 O LEU A 73 SHEET 4 B 5 PHE A 128 GLN A 133 -1 O VAL A 132 N GLY A 34 SHEET 5 B 5 ILE A 136 VAL A 142 -1 O LYS A 138 N VAL A 131 SITE 1 AC1 7 PRO A 40 THR A 44 GLY A 46 CYS A 47 SITE 2 AC1 7 ALA A 64 GLY A 66 ARG A 127 SITE 1 AC2 3 LYS A 63 LYS A 93 SER A 118 SITE 1 AC3 1 PRO A 155 SITE 1 AC4 2 GLN A 133 LEU A 149 SITE 1 AC5 2 ALA A 90 GLU A 91 SITE 1 AC6 3 GLN A 68 ASP A 113 SER A 115 SITE 1 AC7 1 HIS A 88 SITE 1 AC8 1 VAL A 5 SITE 1 AC9 2 HOH A1053 HOH A1122 SITE 1 BC1 4 THR A 150 CYS A 151 HOH A1154 HOH A1195 SITE 1 BC2 5 HOH A1142 HOH A1211 HOH A1241 HOH A1250 SITE 2 BC2 5 HOH A1256 CRYST1 67.313 67.313 123.867 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014856 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014856 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008073 0.00000