HEADER PROTEIN TRANSPORT 21-APR-10 3MNM TITLE CRYSTAL STRUCTURE OF GAE DOMAIN OF GGA2P FROM SACCHAROMYCES CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYLATION FACTOR-BINDING PROTEIN GGA2; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: GAE DOMAIN; COMPND 5 SYNONYM: GOLGI-LOCALIZED, GAMMA EAR-CONTAINING, ARF-BINDING PROTEIN COMPND 6 2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: GGA2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B(+) KEYWDS IG-LIKE, BETA SANDWICH, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR P.FANG,J.WANG,X.LI,L.NIU,M.TENG REVDAT 2 05-MAR-14 3MNM 1 JRNL VERSN REVDAT 1 08-SEP-10 3MNM 0 JRNL AUTH P.FANG,X.LI,J.WANG,L.NIU,M.TENG JRNL TITL STRUCTURAL BASIS FOR THE SPECIFICITY OF THE GAE DOMAIN OF JRNL TITL 2 YGGA2 FOR ITS ACCESSORY PROTEINS ENT3 AND ENT5 JRNL REF BIOCHEMISTRY V. 49 7949 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20704189 JRNL DOI 10.1021/BI1010255 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 47880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2567 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3460 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 193 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2538 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 322 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2686 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3656 ; 1.143 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 349 ; 5.262 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;42.148 ;25.631 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 439 ;12.490 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;12.117 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 442 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1950 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MNM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-APR-10. REMARK 100 THE RCSB ID CODE IS RCSB058770. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49000 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 14.200 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : 0.49700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5M AMMONIUM SULFATE, 0.1M TRI-SODIUM REMARK 280 CITRATE DIHYDRATE, 1.0M LITHIUM SULFATE MONOHYDRATE, PH 5.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.51450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.85800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.85800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.77175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.85800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.85800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.25725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.85800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.85800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 87.77175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.85800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.85800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.25725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.51450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 592 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 595 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 463 REMARK 465 LEU A 464 REMARK 465 GLY A 465 REMARK 465 THR A 466 REMARK 465 THR A 467 REMARK 465 THR A 468 REMARK 465 ALA A 469 REMARK 465 PRO A 470 REMARK 465 PRO A 555 REMARK 465 SER A 556 REMARK 465 LYS A 557 REMARK 465 SER B 463 REMARK 465 LEU B 464 REMARK 465 GLY B 465 REMARK 465 THR B 466 REMARK 465 THR B 467 REMARK 465 THR B 468 REMARK 465 ALA B 469 REMARK 465 PRO B 470 REMARK 465 PRO B 555 REMARK 465 SER B 556 REMARK 465 LYS B 557 REMARK 465 SER C 463 REMARK 465 LEU C 464 REMARK 465 GLY C 465 REMARK 465 THR C 466 REMARK 465 THR C 467 REMARK 465 THR C 468 REMARK 465 ALA C 469 REMARK 465 PRO C 552 REMARK 465 ALA C 553 REMARK 465 ASN C 554 REMARK 465 PRO C 555 REMARK 465 SER C 556 REMARK 465 LYS C 557 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 492 CG OD1 ND2 REMARK 470 LYS A 520 CG CD CE NZ REMARK 470 ASN A 550 CG OD1 ND2 REMARK 470 PRO A 552 CG CD REMARK 470 ASN A 554 CG OD1 ND2 REMARK 470 MLY A 560 CH1 CH2 REMARK 470 LYS A 562 NZ REMARK 470 ASN B 492 CG OD1 ND2 REMARK 470 LYS B 520 CG CD CE NZ REMARK 470 MLY B 525 CH1 CH2 REMARK 470 ASN B 550 OD1 ND2 REMARK 470 ASN B 554 CG OD1 ND2 REMARK 470 LYS B 562 CD CE NZ REMARK 470 ASN B 584 OD1 ND2 REMARK 470 PRO C 470 N CB CG CD REMARK 470 ASN C 492 CG OD1 ND2 REMARK 470 LYS C 520 CG CD CE NZ REMARK 470 MLY C 525 CH1 CH2 REMARK 470 LYS C 539 CD CE NZ REMARK 470 MLY C 560 CE NZ CH1 CH2 REMARK 470 LYS C 562 CE NZ REMARK 470 LYS C 564 CE NZ REMARK 470 SER C 571 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN C 537 19.14 59.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 586 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 2 DBREF 3MNM A 465 585 UNP P38817 GGA2_YEAST 465 585 DBREF 3MNM B 465 585 UNP P38817 GGA2_YEAST 465 585 DBREF 3MNM C 465 585 UNP P38817 GGA2_YEAST 465 585 SEQADV 3MNM SER A 463 UNP P38817 EXPRESSION TAG SEQADV 3MNM LEU A 464 UNP P38817 EXPRESSION TAG SEQADV 3MNM SER B 463 UNP P38817 EXPRESSION TAG SEQADV 3MNM LEU B 464 UNP P38817 EXPRESSION TAG SEQADV 3MNM SER C 463 UNP P38817 EXPRESSION TAG SEQADV 3MNM LEU C 464 UNP P38817 EXPRESSION TAG SEQRES 1 A 123 SER LEU GLY THR THR THR ALA PRO ALA ARG THR LEU VAL SEQRES 2 A 123 ASN GLN SER PRO ASN LEU LYS ILE GLU PHE GLU ILE SER SEQRES 3 A 123 ARG GLU SER ASN SER VAL ILE ARG ILE MLY SER PHE PHE SEQRES 4 A 123 THR ASN LEU SER SER SER PRO ILE SER ASN LEU VAL PHE SEQRES 5 A 123 LEU LEU ALA VAL PRO LYS SER MET SER LEU MLY LEU GLN SEQRES 6 A 123 PRO GLN SER SER ASN PHE MET ILE GLY ASN ALA LYS ASP SEQRES 7 A 123 GLY ILE SER GLN GLU GLY THR ILE GLU ASN ALA PRO ALA SEQRES 8 A 123 ASN PRO SER LYS ALA LEU MLY VAL LYS TRP LYS VAL ASN SEQRES 9 A 123 TYR SER VAL ASN SER THR GLN ALA GLU GLU THR ALA VAL SEQRES 10 A 123 PHE THR LEU PRO ASN VAL SEQRES 1 B 123 SER LEU GLY THR THR THR ALA PRO ALA ARG THR LEU VAL SEQRES 2 B 123 ASN GLN SER PRO ASN LEU LYS ILE GLU PHE GLU ILE SER SEQRES 3 B 123 ARG GLU SER ASN SER VAL ILE ARG ILE MLY SER PHE PHE SEQRES 4 B 123 THR ASN LEU SER SER SER PRO ILE SER ASN LEU VAL PHE SEQRES 5 B 123 LEU LEU ALA VAL PRO LYS SER MET SER LEU MLY LEU GLN SEQRES 6 B 123 PRO GLN SER SER ASN PHE MET ILE GLY ASN ALA LYS ASP SEQRES 7 B 123 GLY ILE SER GLN GLU GLY THR ILE GLU ASN ALA PRO ALA SEQRES 8 B 123 ASN PRO SER LYS ALA LEU MLY VAL LYS TRP LYS VAL ASN SEQRES 9 B 123 TYR SER VAL ASN SER THR GLN ALA GLU GLU THR ALA VAL SEQRES 10 B 123 PHE THR LEU PRO ASN VAL SEQRES 1 C 123 SER LEU GLY THR THR THR ALA PRO ALA ARG THR LEU VAL SEQRES 2 C 123 ASN GLN SER PRO ASN LEU LYS ILE GLU PHE GLU ILE SER SEQRES 3 C 123 ARG GLU SER ASN SER VAL ILE ARG ILE MLY SER PHE PHE SEQRES 4 C 123 THR ASN LEU SER SER SER PRO ILE SER ASN LEU VAL PHE SEQRES 5 C 123 LEU LEU ALA VAL PRO LYS SER MET SER LEU MLY LEU GLN SEQRES 6 C 123 PRO GLN SER SER ASN PHE MET ILE GLY ASN ALA LYS ASP SEQRES 7 C 123 GLY ILE SER GLN GLU GLY THR ILE GLU ASN ALA PRO ALA SEQRES 8 C 123 ASN PRO SER LYS ALA LEU MLY VAL LYS TRP LYS VAL ASN SEQRES 9 C 123 TYR SER VAL ASN SER THR GLN ALA GLU GLU THR ALA VAL SEQRES 10 C 123 PHE THR LEU PRO ASN VAL MODRES 3MNM MLY A 498 LYS N-DIMETHYL-LYSINE MODRES 3MNM MLY A 525 LYS N-DIMETHYL-LYSINE MODRES 3MNM MLY A 560 LYS N-DIMETHYL-LYSINE MODRES 3MNM MLY B 498 LYS N-DIMETHYL-LYSINE MODRES 3MNM MLY B 525 LYS N-DIMETHYL-LYSINE MODRES 3MNM MLY B 560 LYS N-DIMETHYL-LYSINE MODRES 3MNM MLY C 498 LYS N-DIMETHYL-LYSINE MODRES 3MNM MLY C 525 LYS N-DIMETHYL-LYSINE MODRES 3MNM MLY C 560 LYS N-DIMETHYL-LYSINE HET MLY A 498 11 HET MLY A 525 11 HET MLY A 560 9 HET MLY B 498 11 HET MLY B 525 9 HET MLY B 560 11 HET MLY C 498 11 HET MLY C 525 9 HET MLY C 560 7 HET SO4 A 2 5 HET GOL A 1 6 HET GOL A 586 6 HET SO4 B 1 5 HET GOL B 3 6 HET GOL B 4 6 HET SO4 C 3 5 HET GOL C 2 6 HETNAM MLY N-DIMETHYL-LYSINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MLY 9(C8 H18 N2 O2) FORMUL 4 SO4 3(O4 S 2-) FORMUL 5 GOL 5(C3 H8 O3) FORMUL 12 HOH *322(H2 O) SHEET 1 A 5 ARG A 472 GLN A 477 0 SHEET 2 A 5 LEU A 481 ARG A 489 -1 O PHE A 485 N THR A 473 SHEET 3 A 5 ILE A 495 ASN A 503 -1 O ARG A 496 N SER A 488 SHEET 4 A 5 ILE A 542 GLU A 549 -1 O ILE A 542 N PHE A 501 SHEET 5 A 5 SER A 523 LEU A 526 -1 N SER A 523 O GLU A 549 SHEET 1 B 6 ILE A 509 ALA A 517 0 SHEET 2 B 6 MLY A 560 VAL A 569 -1 O LYS A 564 N LEU A 515 SHEET 3 B 6 THR A 572 THR A 581 -1 O ALA A 574 N TYR A 567 SHEET 4 B 6 THR B 572 THR B 581 -1 O VAL B 579 N GLU A 575 SHEET 5 B 6 MLY B 560 VAL B 569 -1 N TYR B 567 O ALA B 574 SHEET 6 B 6 SER B 510 ALA B 517 -1 N VAL B 513 O ASN B 566 SHEET 1 C 5 THR B 473 GLN B 477 0 SHEET 2 C 5 LEU B 481 SER B 491 -1 O PHE B 485 N THR B 473 SHEET 3 C 5 VAL B 494 ASN B 503 -1 O ARG B 496 N SER B 488 SHEET 4 C 5 ILE B 542 GLU B 549 -1 O ILE B 542 N PHE B 501 SHEET 5 C 5 SER B 523 LEU B 526 -1 N SER B 523 O GLU B 549 SHEET 1 D 5 ARG C 472 GLN C 477 0 SHEET 2 D 5 LEU C 481 ARG C 489 -1 O ILE C 483 N ASN C 476 SHEET 3 D 5 ILE C 495 ASN C 503 -1 O ARG C 496 N SER C 488 SHEET 4 D 5 ILE C 542 GLU C 549 -1 O ILE C 542 N PHE C 501 SHEET 5 D 5 SER C 523 LEU C 526 -1 N SER C 523 O GLU C 549 SHEET 1 E 3 ILE C 509 ALA C 517 0 SHEET 2 E 3 LEU C 559 VAL C 569 -1 O ASN C 566 N VAL C 513 SHEET 3 E 3 THR C 572 LEU C 582 -1 O ALA C 574 N TYR C 567 LINK C ILE A 497 N MLY A 498 1555 1555 1.33 LINK C MLY A 498 N SER A 499 1555 1555 1.33 LINK C LEU A 524 N MLY A 525 1555 1555 1.34 LINK C MLY A 525 N LEU A 526 1555 1555 1.34 LINK C LEU A 559 N MLY A 560 1555 1555 1.33 LINK C MLY A 560 N VAL A 561 1555 1555 1.33 LINK C ILE B 497 N MLY B 498 1555 1555 1.33 LINK C MLY B 498 N SER B 499 1555 1555 1.33 LINK C LEU B 524 N MLY B 525 1555 1555 1.33 LINK C MLY B 525 N LEU B 526 1555 1555 1.33 LINK C LEU B 559 N MLY B 560 1555 1555 1.32 LINK C MLY B 560 N VAL B 561 1555 1555 1.33 LINK C ILE C 497 N MLY C 498 1555 1555 1.32 LINK C MLY C 498 N SER C 499 1555 1555 1.33 LINK C LEU C 524 N MLY C 525 1555 1555 1.33 LINK C MLY C 525 N LEU C 526 1555 1555 1.33 LINK C LEU C 559 N MLY C 560 1555 1555 1.33 LINK C MLY C 560 N VAL C 561 1555 1555 1.33 SITE 1 AC1 6 HOH A 305 HOH A 319 HOH A 323 MLY A 560 SITE 2 AC1 6 THR B 572 GLN B 573 SITE 1 AC2 10 HOH A 14 HOH A 44 HOH A 72 ASN A 511 SITE 2 AC2 10 LEU A 515 LEU A 516 TYR A 567 SER A 568 SITE 3 AC2 10 GLN A 573 HOH A 588 SITE 1 AC3 10 SER A 506 SER A 507 PRO A 508 ILE A 535 SITE 2 AC3 10 GLY A 536 HOH A 593 HOH B 93 PRO B 508 SITE 3 AC3 10 PHE B 533 MLY C 525 SITE 1 AC4 6 THR A 572 GLN A 573 HOH B 131 HOH B 256 SITE 2 AC4 6 HOH B 417 MLY B 560 SITE 1 AC5 6 HOH B 270 ALA B 517 VAL B 518 PRO B 519 SITE 2 AC5 6 MLY B 560 LYS B 562 SITE 1 AC6 9 HOH B 135 ASN B 511 VAL B 513 TYR B 567 SITE 2 AC6 9 SER B 568 GLN B 573 HOH B 586 HOH C 314 SITE 3 AC6 9 LEU C 516 SITE 1 AC7 4 HOH C 276 THR C 572 GLN C 573 HOH C 592 SITE 1 AC8 10 LEU B 515 LEU B 516 ALA B 517 HOH C 39 SITE 2 AC8 10 HOH C 84 HOH C 86 ASN C 511 VAL C 513 SITE 3 AC8 10 TYR C 567 GLN C 573 CRYST1 89.716 89.716 117.029 90.00 90.00 90.00 P 43 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011146 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011146 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008545 0.00000