data_3MPD # _entry.id 3MPD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3MPD pdb_00003mpd 10.2210/pdb3mpd/pdb RCSB RCSB058832 ? ? WWPDB D_1000058832 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id EncuA.00646.a _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3MPD _pdbx_database_status.recvd_initial_deposition_date 2010-04-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Seattle Structural Genomics Center for Infectious Disease (SSGCID)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of nucleoside diphosphate kinase from encephalitozoon cuniculi' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gardberg, A.' 1 ? primary 'Edwards, T.E.' 2 ? primary 'Staker, B.' 3 ? primary SSGCID 4 ? # _cell.entry_id 3MPD _cell.length_a 111.330 _cell.length_b 111.330 _cell.length_c 111.330 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3MPD _symmetry.space_group_name_H-M 'P 21 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nucleoside diphosphate kinase' 16980.691 2 2.7.4.6 ? ? ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 3 water nat water 18.015 216 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'NDP kinase, NDPK, NDK' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPGSMERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSEMVEDMMSGMVLAMVWV GKDAVSIGRKLIGETNPQAASVGTIRGDYGVSTGKNIIHGSDCVENAEKEIKLWIGDDVQPVSFFDKEWIY ; _entity_poly.pdbx_seq_one_letter_code_can ;GPGSMERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSEMVEDMMSGMVLAMVWV GKDAVSIGRKLIGETNPQAASVGTIRGDYGVSTGKNIIHGSDCVENAEKEIKLWIGDDVQPVSFFDKEWIY ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier EncuA.00646.a # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 GLY n 1 4 SER n 1 5 MET n 1 6 GLU n 1 7 ARG n 1 8 THR n 1 9 PHE n 1 10 ILE n 1 11 MET n 1 12 ILE n 1 13 LYS n 1 14 PRO n 1 15 ASP n 1 16 ALA n 1 17 ILE n 1 18 LYS n 1 19 ARG n 1 20 ARG n 1 21 LEU n 1 22 ILE n 1 23 SER n 1 24 ARG n 1 25 ILE n 1 26 ILE n 1 27 GLN n 1 28 ARG n 1 29 PHE n 1 30 GLU n 1 31 GLU n 1 32 LYS n 1 33 GLY n 1 34 LEU n 1 35 TYR n 1 36 LEU n 1 37 ALA n 1 38 ALA n 1 39 SER n 1 40 LYS n 1 41 CYS n 1 42 VAL n 1 43 ILE n 1 44 PRO n 1 45 LYS n 1 46 ARG n 1 47 GLU n 1 48 VAL n 1 49 LEU n 1 50 GLU n 1 51 THR n 1 52 HIS n 1 53 TYR n 1 54 SER n 1 55 HIS n 1 56 LEU n 1 57 SER n 1 58 SER n 1 59 MET n 1 60 PRO n 1 61 PHE n 1 62 PHE n 1 63 SER n 1 64 GLU n 1 65 MET n 1 66 VAL n 1 67 GLU n 1 68 ASP n 1 69 MET n 1 70 MET n 1 71 SER n 1 72 GLY n 1 73 MET n 1 74 VAL n 1 75 LEU n 1 76 ALA n 1 77 MET n 1 78 VAL n 1 79 TRP n 1 80 VAL n 1 81 GLY n 1 82 LYS n 1 83 ASP n 1 84 ALA n 1 85 VAL n 1 86 SER n 1 87 ILE n 1 88 GLY n 1 89 ARG n 1 90 LYS n 1 91 LEU n 1 92 ILE n 1 93 GLY n 1 94 GLU n 1 95 THR n 1 96 ASN n 1 97 PRO n 1 98 GLN n 1 99 ALA n 1 100 ALA n 1 101 SER n 1 102 VAL n 1 103 GLY n 1 104 THR n 1 105 ILE n 1 106 ARG n 1 107 GLY n 1 108 ASP n 1 109 TYR n 1 110 GLY n 1 111 VAL n 1 112 SER n 1 113 THR n 1 114 GLY n 1 115 LYS n 1 116 ASN n 1 117 ILE n 1 118 ILE n 1 119 HIS n 1 120 GLY n 1 121 SER n 1 122 ASP n 1 123 CYS n 1 124 VAL n 1 125 GLU n 1 126 ASN n 1 127 ALA n 1 128 GLU n 1 129 LYS n 1 130 GLU n 1 131 ILE n 1 132 LYS n 1 133 LEU n 1 134 TRP n 1 135 ILE n 1 136 GLY n 1 137 ASP n 1 138 ASP n 1 139 VAL n 1 140 GLN n 1 141 PRO n 1 142 VAL n 1 143 SER n 1 144 PHE n 1 145 PHE n 1 146 ASP n 1 147 LYS n 1 148 GLU n 1 149 TRP n 1 150 ILE n 1 151 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Microsporidian parasite' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ECU06_1530, HM-1:IMSS, NDK1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Encephalitozoon cuniculi' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 6035 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name AVA0421 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NDK_ENCCU _struct_ref.pdbx_db_accession Q8SRM7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSEMVEDMMSGMVLAMVWVGKDA VSIGRKLIGETNPQAASVGTIRGDYGVSTGKNIIHGSDCVENAEKEIKLWIGDDVQPVSFFDKEWIY ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3MPD A 5 ? 151 ? Q8SRM7 1 ? 147 ? 1 147 2 1 3MPD B 5 ? 151 ? Q8SRM7 1 ? 147 ? 1 147 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3MPD GLY A 1 ? UNP Q8SRM7 ? ? 'expression tag' -3 1 1 3MPD PRO A 2 ? UNP Q8SRM7 ? ? 'expression tag' -2 2 1 3MPD GLY A 3 ? UNP Q8SRM7 ? ? 'expression tag' -1 3 1 3MPD SER A 4 ? UNP Q8SRM7 ? ? 'expression tag' 0 4 2 3MPD GLY B 1 ? UNP Q8SRM7 ? ? 'expression tag' -3 5 2 3MPD PRO B 2 ? UNP Q8SRM7 ? ? 'expression tag' -2 6 2 3MPD GLY B 3 ? UNP Q8SRM7 ? ? 'expression tag' -1 7 2 3MPD SER B 4 ? UNP Q8SRM7 ? ? 'expression tag' 0 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3MPD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.39 _exptl_crystal.density_percent_sol 63.67 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pdbx_details ;PACT SCREEN CONDITION F8: 100MM BIS-TRIS PROPANE PH 6.5, 20% PEG 3350, 200 MM NA2SO4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-04-17 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97650 1.0 2 0.9765 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.3' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.3 _diffrn_source.pdbx_wavelength 0.97650 _diffrn_source.pdbx_wavelength_list 0.9765 # _reflns.entry_id 3MPD _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 33.57 _reflns.d_resolution_high 2.080 _reflns.number_obs 27311 _reflns.number_all 28061 _reflns.percent_possible_obs 97.3 _reflns.pdbx_Rmerge_I_obs 0.07700 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.8800 _reflns.B_iso_Wilson_estimate 33.82 _reflns.pdbx_redundancy 11.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.08 _reflns_shell.d_res_low 2.13 _reflns_shell.percent_possible_all 95.5 _reflns_shell.Rmerge_I_obs 0.45400 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.700 _reflns_shell.pdbx_redundancy 10.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2051 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3MPD _refine.ls_number_reflns_obs 27246 _refine.ls_number_reflns_all 28061 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.57 _refine.ls_d_res_high 2.08 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.177 _refine.ls_R_factor_all 0.177 _refine.ls_R_factor_R_work 0.175 _refine.ls_R_factor_R_free 0.207 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1385 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.940 _refine.B_iso_mean 29.99 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE' _refine.pdbx_starting_model '1NSQ (Drosophila NDP kinase)' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.139 _refine.overall_SU_ML 0.091 _refine.overall_SU_B 7.510 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2316 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 216 _refine_hist.number_atoms_total 2536 _refine_hist.d_res_high 2.08 _refine_hist.d_res_low 33.57 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.022 ? 2402 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.333 1.960 ? 3245 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.159 5.000 ? 306 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.659 23.469 ? 98 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.160 15.000 ? 449 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.605 15.000 ? 16 'X-RAY DIFFRACTION' ? r_chiral_restr 0.089 0.200 ? 361 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.021 ? 1772 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.711 1.500 ? 1482 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.287 2.000 ? 2406 'X-RAY DIFFRACTION' ? r_scbond_it 2.255 3.000 ? 920 'X-RAY DIFFRACTION' ? r_scangle_it 3.686 4.500 ? 833 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight 1 A 504 0.110 0.500 'medium positional' 1 1 'X-RAY DIFFRACTION' ? ? ? ? ? ? 1 A 504 0.880 2.000 'medium thermal' 1 2 'X-RAY DIFFRACTION' ? ? ? ? ? ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.08 _refine_ls_shell.d_res_low 2.13 _refine_ls_shell.number_reflns_R_work 1873 _refine_ls_shell.R_factor_R_work 0.2210 _refine_ls_shell.percent_reflns_obs 95.47 _refine_ls_shell.R_factor_R_free 0.3000 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 85 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1959 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.id _struct_ncs_dom.details _struct_ncs_dom.pdbx_ens_id 1 A 1 2 B 1 # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 1 A MET 5 . A GLU 31 . A MET 1 A GLU 27 4 ? 1 2 1 B MET 5 . B GLU 31 . B MET 1 B GLU 27 4 ? 1 1 2 A VAL 74 . A GLY 81 . A VAL 70 A GLY 77 4 ? 1 2 2 B VAL 74 . B GLY 81 . B VAL 70 B GLY 77 4 ? 1 1 3 A ALA 84 . A ASN 96 . A ALA 80 A ASN 92 4 ? 1 2 3 B ALA 84 . B ASN 96 . B ALA 80 B ASN 92 4 ? 1 1 4 A THR 104 . A GLY 110 . A THR 100 A GLY 106 4 ? 1 2 4 B THR 104 . B GLY 110 . B THR 100 B GLY 106 4 ? 1 1 5 A ILE 117 . A VAL 124 . A ILE 113 A VAL 120 4 ? 1 2 5 B ILE 117 . B VAL 124 . B ILE 113 B VAL 120 4 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3MPD _struct.title 'Crystal structure of nucleoside diphosphate kinase from encephalitozoon cuniculi, cubic form, apo' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3MPD _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;SSGCID, NIH, NIAID, SBRI, UW, EMERALD BIOSTRUCTURES, ENCEPHALITOZOON CUNICULI, KINASE, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, TRANSFERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 13 ? ARG A 19 ? LYS A 9 ARG A 15 1 ? 7 HELX_P HELX_P2 2 LEU A 21 ? GLY A 33 ? LEU A 17 GLY A 29 1 ? 13 HELX_P HELX_P3 3 LYS A 45 ? TYR A 53 ? LYS A 41 TYR A 49 1 ? 9 HELX_P HELX_P4 4 SER A 54 ? SER A 57 ? SER A 50 SER A 53 5 ? 4 HELX_P HELX_P5 5 PHE A 61 ? MET A 70 ? PHE A 57 MET A 66 1 ? 10 HELX_P HELX_P6 6 ASP A 83 ? GLY A 93 ? ASP A 79 GLY A 89 1 ? 11 HELX_P HELX_P7 7 THR A 104 ? GLY A 110 ? THR A 100 GLY A 106 1 ? 7 HELX_P HELX_P8 8 CYS A 123 ? ILE A 135 ? CYS A 119 ILE A 131 1 ? 13 HELX_P HELX_P9 9 ASP A 146 ? TYR A 151 ? ASP A 142 TYR A 147 1 ? 6 HELX_P HELX_P10 10 LYS B 13 ? ARG B 19 ? LYS B 9 ARG B 15 1 ? 7 HELX_P HELX_P11 11 LEU B 21 ? GLY B 33 ? LEU B 17 GLY B 29 1 ? 13 HELX_P HELX_P12 12 LYS B 45 ? TYR B 53 ? LYS B 41 TYR B 49 1 ? 9 HELX_P HELX_P13 13 SER B 54 ? SER B 57 ? SER B 50 SER B 53 5 ? 4 HELX_P HELX_P14 14 PHE B 61 ? MET B 70 ? PHE B 57 MET B 66 1 ? 10 HELX_P HELX_P15 15 ASP B 83 ? GLY B 93 ? ASP B 79 GLY B 89 1 ? 11 HELX_P HELX_P16 16 THR B 104 ? GLY B 110 ? THR B 100 GLY B 106 1 ? 7 HELX_P HELX_P17 17 CYS B 123 ? ILE B 135 ? CYS B 119 ILE B 131 1 ? 13 HELX_P HELX_P18 18 ASP B 146 ? TYR B 151 ? ASP B 142 TYR B 147 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 35 ? VAL A 42 ? TYR A 31 VAL A 38 A 2 VAL A 74 ? VAL A 80 ? VAL A 70 VAL A 76 A 3 ARG A 7 ? ILE A 12 ? ARG A 3 ILE A 8 A 4 ILE A 118 ? GLY A 120 ? ILE A 114 GLY A 116 B 1 TYR B 35 ? VAL B 42 ? TYR B 31 VAL B 38 B 2 VAL B 74 ? VAL B 80 ? VAL B 70 VAL B 76 B 3 ARG B 7 ? ILE B 12 ? ARG B 3 ILE B 8 B 4 ILE B 118 ? GLY B 120 ? ILE B 114 GLY B 116 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 35 ? N TYR A 31 O VAL A 80 ? O VAL A 76 A 2 3 O MET A 77 ? O MET A 73 N ILE A 10 ? N ILE A 6 A 3 4 N MET A 11 ? N MET A 7 O HIS A 119 ? O HIS A 115 B 1 2 N LYS B 40 ? N LYS B 36 O ALA B 76 ? O ALA B 72 B 2 3 O TRP B 79 ? O TRP B 75 N THR B 8 ? N THR B 4 B 3 4 N MET B 11 ? N MET B 7 O HIS B 119 ? O HIS B 115 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id EDO _struct_site.pdbx_auth_seq_id 148 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE EDO A 148' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 PHE A 145 ? PHE A 141 . ? 1_555 ? 2 AC1 5 ASP A 146 ? ASP A 142 . ? 1_555 ? 3 AC1 5 LYS A 147 ? LYS A 143 . ? 1_555 ? 4 AC1 5 GLU A 148 ? GLU A 144 . ? 1_555 ? 5 AC1 5 HOH D . ? HOH A 243 . ? 1_555 ? # _database_PDB_matrix.entry_id 3MPD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3MPD _atom_sites.fract_transf_matrix[1][1] 0.008982 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008982 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008982 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 PRO 2 -2 ? ? ? A . n A 1 3 GLY 3 -1 ? ? ? A . n A 1 4 SER 4 0 ? ? ? A . n A 1 5 MET 5 1 1 MET MET A . n A 1 6 GLU 6 2 2 GLU GLU A . n A 1 7 ARG 7 3 3 ARG ARG A . n A 1 8 THR 8 4 4 THR THR A . n A 1 9 PHE 9 5 5 PHE PHE A . n A 1 10 ILE 10 6 6 ILE ILE A . n A 1 11 MET 11 7 7 MET MET A . n A 1 12 ILE 12 8 8 ILE ILE A . n A 1 13 LYS 13 9 9 LYS LYS A . n A 1 14 PRO 14 10 10 PRO PRO A . n A 1 15 ASP 15 11 11 ASP ASP A . n A 1 16 ALA 16 12 12 ALA ALA A . n A 1 17 ILE 17 13 13 ILE ILE A . n A 1 18 LYS 18 14 14 LYS LYS A . n A 1 19 ARG 19 15 15 ARG ARG A . n A 1 20 ARG 20 16 16 ARG ARG A . n A 1 21 LEU 21 17 17 LEU LEU A . n A 1 22 ILE 22 18 18 ILE ILE A . n A 1 23 SER 23 19 19 SER SER A . n A 1 24 ARG 24 20 20 ARG ARG A . n A 1 25 ILE 25 21 21 ILE ILE A . n A 1 26 ILE 26 22 22 ILE ILE A . n A 1 27 GLN 27 23 23 GLN GLN A . n A 1 28 ARG 28 24 24 ARG ARG A . n A 1 29 PHE 29 25 25 PHE PHE A . n A 1 30 GLU 30 26 26 GLU GLU A . n A 1 31 GLU 31 27 27 GLU GLU A . n A 1 32 LYS 32 28 28 LYS LYS A . n A 1 33 GLY 33 29 29 GLY GLY A . n A 1 34 LEU 34 30 30 LEU LEU A . n A 1 35 TYR 35 31 31 TYR TYR A . n A 1 36 LEU 36 32 32 LEU LEU A . n A 1 37 ALA 37 33 33 ALA ALA A . n A 1 38 ALA 38 34 34 ALA ALA A . n A 1 39 SER 39 35 35 SER SER A . n A 1 40 LYS 40 36 36 LYS LYS A . n A 1 41 CYS 41 37 37 CYS CYS A . n A 1 42 VAL 42 38 38 VAL VAL A . n A 1 43 ILE 43 39 39 ILE ILE A . n A 1 44 PRO 44 40 40 PRO PRO A . n A 1 45 LYS 45 41 41 LYS LYS A . n A 1 46 ARG 46 42 42 ARG ARG A . n A 1 47 GLU 47 43 43 GLU GLU A . n A 1 48 VAL 48 44 44 VAL VAL A . n A 1 49 LEU 49 45 45 LEU LEU A . n A 1 50 GLU 50 46 46 GLU GLU A . n A 1 51 THR 51 47 47 THR THR A . n A 1 52 HIS 52 48 48 HIS HIS A . n A 1 53 TYR 53 49 49 TYR TYR A . n A 1 54 SER 54 50 50 SER SER A . n A 1 55 HIS 55 51 51 HIS HIS A . n A 1 56 LEU 56 52 52 LEU LEU A . n A 1 57 SER 57 53 53 SER SER A . n A 1 58 SER 58 54 54 SER SER A . n A 1 59 MET 59 55 55 MET MET A . n A 1 60 PRO 60 56 56 PRO PRO A . n A 1 61 PHE 61 57 57 PHE PHE A . n A 1 62 PHE 62 58 58 PHE PHE A . n A 1 63 SER 63 59 59 SER SER A . n A 1 64 GLU 64 60 60 GLU GLU A . n A 1 65 MET 65 61 61 MET MET A . n A 1 66 VAL 66 62 62 VAL VAL A . n A 1 67 GLU 67 63 63 GLU GLU A . n A 1 68 ASP 68 64 64 ASP ASP A . n A 1 69 MET 69 65 65 MET MET A . n A 1 70 MET 70 66 66 MET MET A . n A 1 71 SER 71 67 67 SER SER A . n A 1 72 GLY 72 68 68 GLY GLY A . n A 1 73 MET 73 69 69 MET MET A . n A 1 74 VAL 74 70 70 VAL VAL A . n A 1 75 LEU 75 71 71 LEU LEU A . n A 1 76 ALA 76 72 72 ALA ALA A . n A 1 77 MET 77 73 73 MET MET A . n A 1 78 VAL 78 74 74 VAL VAL A . n A 1 79 TRP 79 75 75 TRP TRP A . n A 1 80 VAL 80 76 76 VAL VAL A . n A 1 81 GLY 81 77 77 GLY GLY A . n A 1 82 LYS 82 78 78 LYS LYS A . n A 1 83 ASP 83 79 79 ASP ASP A . n A 1 84 ALA 84 80 80 ALA ALA A . n A 1 85 VAL 85 81 81 VAL VAL A . n A 1 86 SER 86 82 82 SER SER A . n A 1 87 ILE 87 83 83 ILE ILE A . n A 1 88 GLY 88 84 84 GLY GLY A . n A 1 89 ARG 89 85 85 ARG ARG A . n A 1 90 LYS 90 86 86 LYS LYS A . n A 1 91 LEU 91 87 87 LEU LEU A . n A 1 92 ILE 92 88 88 ILE ILE A . n A 1 93 GLY 93 89 89 GLY GLY A . n A 1 94 GLU 94 90 90 GLU GLU A . n A 1 95 THR 95 91 91 THR THR A . n A 1 96 ASN 96 92 92 ASN ASN A . n A 1 97 PRO 97 93 93 PRO PRO A . n A 1 98 GLN 98 94 94 GLN GLN A . n A 1 99 ALA 99 95 95 ALA ALA A . n A 1 100 ALA 100 96 96 ALA ALA A . n A 1 101 SER 101 97 97 SER SER A . n A 1 102 VAL 102 98 98 VAL VAL A . n A 1 103 GLY 103 99 99 GLY GLY A . n A 1 104 THR 104 100 100 THR THR A . n A 1 105 ILE 105 101 101 ILE ILE A . n A 1 106 ARG 106 102 102 ARG ARG A . n A 1 107 GLY 107 103 103 GLY GLY A . n A 1 108 ASP 108 104 104 ASP ASP A . n A 1 109 TYR 109 105 105 TYR TYR A . n A 1 110 GLY 110 106 106 GLY GLY A . n A 1 111 VAL 111 107 107 VAL VAL A . n A 1 112 SER 112 108 108 SER SER A . n A 1 113 THR 113 109 109 THR THR A . n A 1 114 GLY 114 110 110 GLY GLY A . n A 1 115 LYS 115 111 111 LYS LYS A . n A 1 116 ASN 116 112 112 ASN ASN A . n A 1 117 ILE 117 113 113 ILE ILE A . n A 1 118 ILE 118 114 114 ILE ILE A . n A 1 119 HIS 119 115 115 HIS HIS A . n A 1 120 GLY 120 116 116 GLY GLY A . n A 1 121 SER 121 117 117 SER SER A . n A 1 122 ASP 122 118 118 ASP ASP A . n A 1 123 CYS 123 119 119 CYS CYS A . n A 1 124 VAL 124 120 120 VAL VAL A . n A 1 125 GLU 125 121 121 GLU GLU A . n A 1 126 ASN 126 122 122 ASN ASN A . n A 1 127 ALA 127 123 123 ALA ALA A . n A 1 128 GLU 128 124 124 GLU GLU A . n A 1 129 LYS 129 125 125 LYS LYS A . n A 1 130 GLU 130 126 126 GLU GLU A . n A 1 131 ILE 131 127 127 ILE ILE A . n A 1 132 LYS 132 128 128 LYS LYS A . n A 1 133 LEU 133 129 129 LEU LEU A . n A 1 134 TRP 134 130 130 TRP TRP A . n A 1 135 ILE 135 131 131 ILE ILE A . n A 1 136 GLY 136 132 132 GLY GLY A . n A 1 137 ASP 137 133 133 ASP ASP A . n A 1 138 ASP 138 134 134 ASP ASP A . n A 1 139 VAL 139 135 135 VAL VAL A . n A 1 140 GLN 140 136 136 GLN GLN A . n A 1 141 PRO 141 137 137 PRO PRO A . n A 1 142 VAL 142 138 138 VAL VAL A . n A 1 143 SER 143 139 139 SER SER A . n A 1 144 PHE 144 140 140 PHE PHE A . n A 1 145 PHE 145 141 141 PHE PHE A . n A 1 146 ASP 146 142 142 ASP ASP A . n A 1 147 LYS 147 143 143 LYS LYS A . n A 1 148 GLU 148 144 144 GLU GLU A . n A 1 149 TRP 149 145 145 TRP TRP A . n A 1 150 ILE 150 146 146 ILE ILE A . n A 1 151 TYR 151 147 147 TYR TYR A . n B 1 1 GLY 1 -3 ? ? ? B . n B 1 2 PRO 2 -2 ? ? ? B . n B 1 3 GLY 3 -1 ? ? ? B . n B 1 4 SER 4 0 ? ? ? B . n B 1 5 MET 5 1 1 MET MET B . n B 1 6 GLU 6 2 2 GLU GLU B . n B 1 7 ARG 7 3 3 ARG ARG B . n B 1 8 THR 8 4 4 THR THR B . n B 1 9 PHE 9 5 5 PHE PHE B . n B 1 10 ILE 10 6 6 ILE ILE B . n B 1 11 MET 11 7 7 MET MET B . n B 1 12 ILE 12 8 8 ILE ILE B . n B 1 13 LYS 13 9 9 LYS LYS B . n B 1 14 PRO 14 10 10 PRO PRO B . n B 1 15 ASP 15 11 11 ASP ASP B . n B 1 16 ALA 16 12 12 ALA ALA B . n B 1 17 ILE 17 13 13 ILE ILE B . n B 1 18 LYS 18 14 14 LYS LYS B . n B 1 19 ARG 19 15 15 ARG ARG B . n B 1 20 ARG 20 16 16 ARG ARG B . n B 1 21 LEU 21 17 17 LEU LEU B . n B 1 22 ILE 22 18 18 ILE ILE B . n B 1 23 SER 23 19 19 SER SER B . n B 1 24 ARG 24 20 20 ARG ARG B . n B 1 25 ILE 25 21 21 ILE ILE B . n B 1 26 ILE 26 22 22 ILE ILE B . n B 1 27 GLN 27 23 23 GLN GLN B . n B 1 28 ARG 28 24 24 ARG ARG B . n B 1 29 PHE 29 25 25 PHE PHE B . n B 1 30 GLU 30 26 26 GLU GLU B . n B 1 31 GLU 31 27 27 GLU GLU B . n B 1 32 LYS 32 28 28 LYS LYS B . n B 1 33 GLY 33 29 29 GLY GLY B . n B 1 34 LEU 34 30 30 LEU LEU B . n B 1 35 TYR 35 31 31 TYR TYR B . n B 1 36 LEU 36 32 32 LEU LEU B . n B 1 37 ALA 37 33 33 ALA ALA B . n B 1 38 ALA 38 34 34 ALA ALA B . n B 1 39 SER 39 35 35 SER SER B . n B 1 40 LYS 40 36 36 LYS LYS B . n B 1 41 CYS 41 37 37 CYS CYS B . n B 1 42 VAL 42 38 38 VAL VAL B . n B 1 43 ILE 43 39 39 ILE ILE B . n B 1 44 PRO 44 40 40 PRO PRO B . n B 1 45 LYS 45 41 41 LYS LYS B . n B 1 46 ARG 46 42 42 ARG ARG B . n B 1 47 GLU 47 43 43 GLU GLU B . n B 1 48 VAL 48 44 44 VAL VAL B . n B 1 49 LEU 49 45 45 LEU LEU B . n B 1 50 GLU 50 46 46 GLU GLU B . n B 1 51 THR 51 47 47 THR THR B . n B 1 52 HIS 52 48 48 HIS HIS B . n B 1 53 TYR 53 49 49 TYR TYR B . n B 1 54 SER 54 50 50 SER SER B . n B 1 55 HIS 55 51 51 HIS HIS B . n B 1 56 LEU 56 52 52 LEU LEU B . n B 1 57 SER 57 53 53 SER SER B . n B 1 58 SER 58 54 54 SER SER B . n B 1 59 MET 59 55 55 MET MET B . n B 1 60 PRO 60 56 56 PRO PRO B . n B 1 61 PHE 61 57 57 PHE PHE B . n B 1 62 PHE 62 58 58 PHE PHE B . n B 1 63 SER 63 59 59 SER SER B . n B 1 64 GLU 64 60 60 GLU GLU B . n B 1 65 MET 65 61 61 MET MET B . n B 1 66 VAL 66 62 62 VAL VAL B . n B 1 67 GLU 67 63 63 GLU GLU B . n B 1 68 ASP 68 64 64 ASP ASP B . n B 1 69 MET 69 65 65 MET MET B . n B 1 70 MET 70 66 66 MET MET B . n B 1 71 SER 71 67 67 SER SER B . n B 1 72 GLY 72 68 68 GLY GLY B . n B 1 73 MET 73 69 69 MET MET B . n B 1 74 VAL 74 70 70 VAL VAL B . n B 1 75 LEU 75 71 71 LEU LEU B . n B 1 76 ALA 76 72 72 ALA ALA B . n B 1 77 MET 77 73 73 MET MET B . n B 1 78 VAL 78 74 74 VAL VAL B . n B 1 79 TRP 79 75 75 TRP TRP B . n B 1 80 VAL 80 76 76 VAL VAL B . n B 1 81 GLY 81 77 77 GLY GLY B . n B 1 82 LYS 82 78 78 LYS LYS B . n B 1 83 ASP 83 79 79 ASP ASP B . n B 1 84 ALA 84 80 80 ALA ALA B . n B 1 85 VAL 85 81 81 VAL VAL B . n B 1 86 SER 86 82 82 SER SER B . n B 1 87 ILE 87 83 83 ILE ILE B . n B 1 88 GLY 88 84 84 GLY GLY B . n B 1 89 ARG 89 85 85 ARG ARG B . n B 1 90 LYS 90 86 86 LYS LYS B . n B 1 91 LEU 91 87 87 LEU LEU B . n B 1 92 ILE 92 88 88 ILE ILE B . n B 1 93 GLY 93 89 89 GLY GLY B . n B 1 94 GLU 94 90 90 GLU GLU B . n B 1 95 THR 95 91 91 THR THR B . n B 1 96 ASN 96 92 92 ASN ASN B . n B 1 97 PRO 97 93 93 PRO PRO B . n B 1 98 GLN 98 94 94 GLN GLN B . n B 1 99 ALA 99 95 95 ALA ALA B . n B 1 100 ALA 100 96 96 ALA ALA B . n B 1 101 SER 101 97 97 SER SER B . n B 1 102 VAL 102 98 98 VAL VAL B . n B 1 103 GLY 103 99 99 GLY GLY B . n B 1 104 THR 104 100 100 THR THR B . n B 1 105 ILE 105 101 101 ILE ILE B . n B 1 106 ARG 106 102 102 ARG ARG B . n B 1 107 GLY 107 103 103 GLY GLY B . n B 1 108 ASP 108 104 104 ASP ASP B . n B 1 109 TYR 109 105 105 TYR TYR B . n B 1 110 GLY 110 106 106 GLY GLY B . n B 1 111 VAL 111 107 107 VAL VAL B . n B 1 112 SER 112 108 108 SER SER B . n B 1 113 THR 113 109 109 THR THR B . n B 1 114 GLY 114 110 110 GLY GLY B . n B 1 115 LYS 115 111 111 LYS LYS B . n B 1 116 ASN 116 112 112 ASN ASN B . n B 1 117 ILE 117 113 113 ILE ILE B . n B 1 118 ILE 118 114 114 ILE ILE B . n B 1 119 HIS 119 115 115 HIS HIS B . n B 1 120 GLY 120 116 116 GLY GLY B . n B 1 121 SER 121 117 117 SER SER B . n B 1 122 ASP 122 118 118 ASP ASP B . n B 1 123 CYS 123 119 119 CYS CYS B . n B 1 124 VAL 124 120 120 VAL VAL B . n B 1 125 GLU 125 121 121 GLU GLU B . n B 1 126 ASN 126 122 122 ASN ASN B . n B 1 127 ALA 127 123 123 ALA ALA B . n B 1 128 GLU 128 124 124 GLU GLU B . n B 1 129 LYS 129 125 125 LYS LYS B . n B 1 130 GLU 130 126 126 GLU GLU B . n B 1 131 ILE 131 127 127 ILE ILE B . n B 1 132 LYS 132 128 128 LYS LYS B . n B 1 133 LEU 133 129 129 LEU LEU B . n B 1 134 TRP 134 130 130 TRP TRP B . n B 1 135 ILE 135 131 131 ILE ILE B . n B 1 136 GLY 136 132 132 GLY GLY B . n B 1 137 ASP 137 133 133 ASP ASP B . n B 1 138 ASP 138 134 134 ASP ASP B . n B 1 139 VAL 139 135 135 VAL VAL B . n B 1 140 GLN 140 136 136 GLN GLN B . n B 1 141 PRO 141 137 137 PRO PRO B . n B 1 142 VAL 142 138 138 VAL VAL B . n B 1 143 SER 143 139 139 SER SER B . n B 1 144 PHE 144 140 140 PHE PHE B . n B 1 145 PHE 145 141 141 PHE PHE B . n B 1 146 ASP 146 142 142 ASP ASP B . n B 1 147 LYS 147 143 143 LYS LYS B . n B 1 148 GLU 148 144 144 GLU GLU B . n B 1 149 TRP 149 145 145 TRP TRP B . n B 1 150 ILE 150 146 146 ILE ILE B . n B 1 151 TYR 151 147 147 TYR TYR B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Seattle Structural Genomics Center for Infectious Disease' _pdbx_SG_project.initial_of_center SSGCID # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO 1 148 1 EDO EDO A . D 3 HOH 1 149 1 HOH HOH A . D 3 HOH 2 150 2 HOH HOH A . D 3 HOH 3 151 151 HOH HOH A . D 3 HOH 4 152 3 HOH HOH A . D 3 HOH 5 153 153 HOH HOH A . D 3 HOH 6 154 5 HOH HOH A . D 3 HOH 7 155 155 HOH HOH A . D 3 HOH 8 156 6 HOH HOH A . D 3 HOH 9 157 8 HOH HOH A . D 3 HOH 10 158 10 HOH HOH A . D 3 HOH 11 159 12 HOH HOH A . D 3 HOH 12 160 16 HOH HOH A . D 3 HOH 13 161 17 HOH HOH A . D 3 HOH 14 162 18 HOH HOH A . D 3 HOH 15 163 163 HOH HOH A . D 3 HOH 16 164 164 HOH HOH A . D 3 HOH 17 165 165 HOH HOH A . D 3 HOH 18 166 166 HOH HOH A . D 3 HOH 19 167 167 HOH HOH A . D 3 HOH 20 168 168 HOH HOH A . D 3 HOH 21 169 169 HOH HOH A . D 3 HOH 22 170 170 HOH HOH A . D 3 HOH 23 171 31 HOH HOH A . D 3 HOH 24 172 172 HOH HOH A . D 3 HOH 25 173 32 HOH HOH A . D 3 HOH 26 174 33 HOH HOH A . D 3 HOH 27 175 35 HOH HOH A . D 3 HOH 28 176 39 HOH HOH A . D 3 HOH 29 177 41 HOH HOH A . D 3 HOH 30 178 42 HOH HOH A . D 3 HOH 31 179 179 HOH HOH A . D 3 HOH 32 180 180 HOH HOH A . D 3 HOH 33 181 181 HOH HOH A . D 3 HOH 34 182 182 HOH HOH A . D 3 HOH 35 183 183 HOH HOH A . D 3 HOH 36 184 184 HOH HOH A . D 3 HOH 37 185 44 HOH HOH A . D 3 HOH 38 186 46 HOH HOH A . D 3 HOH 39 187 47 HOH HOH A . D 3 HOH 40 188 48 HOH HOH A . D 3 HOH 41 189 50 HOH HOH A . D 3 HOH 42 190 51 HOH HOH A . D 3 HOH 43 191 53 HOH HOH A . D 3 HOH 44 192 54 HOH HOH A . D 3 HOH 45 193 55 HOH HOH A . D 3 HOH 46 194 60 HOH HOH A . D 3 HOH 47 195 62 HOH HOH A . D 3 HOH 48 196 63 HOH HOH A . D 3 HOH 49 197 64 HOH HOH A . D 3 HOH 50 198 66 HOH HOH A . D 3 HOH 51 199 67 HOH HOH A . D 3 HOH 52 200 68 HOH HOH A . D 3 HOH 53 201 69 HOH HOH A . D 3 HOH 54 202 70 HOH HOH A . D 3 HOH 55 203 73 HOH HOH A . D 3 HOH 56 204 74 HOH HOH A . D 3 HOH 57 205 77 HOH HOH A . D 3 HOH 58 206 78 HOH HOH A . D 3 HOH 59 207 207 HOH HOH A . D 3 HOH 60 208 208 HOH HOH A . D 3 HOH 61 209 209 HOH HOH A . D 3 HOH 62 210 210 HOH HOH A . D 3 HOH 63 211 211 HOH HOH A . D 3 HOH 64 212 212 HOH HOH A . D 3 HOH 65 213 82 HOH HOH A . D 3 HOH 66 214 214 HOH HOH A . D 3 HOH 67 215 86 HOH HOH A . D 3 HOH 68 216 216 HOH HOH A . D 3 HOH 69 217 217 HOH HOH A . D 3 HOH 70 218 87 HOH HOH A . D 3 HOH 71 219 219 HOH HOH A . D 3 HOH 72 220 220 HOH HOH A . D 3 HOH 73 221 221 HOH HOH A . D 3 HOH 74 222 222 HOH HOH A . D 3 HOH 75 223 223 HOH HOH A . D 3 HOH 76 224 88 HOH HOH A . D 3 HOH 77 225 89 HOH HOH A . D 3 HOH 78 226 91 HOH HOH A . D 3 HOH 79 227 96 HOH HOH A . D 3 HOH 80 228 97 HOH HOH A . D 3 HOH 81 229 98 HOH HOH A . D 3 HOH 82 230 102 HOH HOH A . D 3 HOH 83 231 105 HOH HOH A . D 3 HOH 84 232 107 HOH HOH A . D 3 HOH 85 233 108 HOH HOH A . D 3 HOH 86 234 109 HOH HOH A . D 3 HOH 87 235 110 HOH HOH A . D 3 HOH 88 236 118 HOH HOH A . D 3 HOH 89 237 119 HOH HOH A . D 3 HOH 90 238 120 HOH HOH A . D 3 HOH 91 239 121 HOH HOH A . D 3 HOH 92 240 122 HOH HOH A . D 3 HOH 93 241 124 HOH HOH A . D 3 HOH 94 242 125 HOH HOH A . D 3 HOH 95 243 126 HOH HOH A . D 3 HOH 96 244 127 HOH HOH A . D 3 HOH 97 245 131 HOH HOH A . D 3 HOH 98 246 135 HOH HOH A . D 3 HOH 99 247 138 HOH HOH A . D 3 HOH 100 248 145 HOH HOH A . D 3 HOH 101 249 146 HOH HOH A . D 3 HOH 102 250 160 HOH HOH A . D 3 HOH 103 251 161 HOH HOH A . E 3 HOH 1 148 4 HOH HOH B . E 3 HOH 2 149 149 HOH HOH B . E 3 HOH 3 150 150 HOH HOH B . E 3 HOH 4 151 7 HOH HOH B . E 3 HOH 5 152 152 HOH HOH B . E 3 HOH 6 153 9 HOH HOH B . E 3 HOH 7 154 11 HOH HOH B . E 3 HOH 8 155 13 HOH HOH B . E 3 HOH 9 156 156 HOH HOH B . E 3 HOH 10 157 14 HOH HOH B . E 3 HOH 11 158 15 HOH HOH B . E 3 HOH 12 159 159 HOH HOH B . E 3 HOH 13 162 19 HOH HOH B . E 3 HOH 14 163 20 HOH HOH B . E 3 HOH 15 164 21 HOH HOH B . E 3 HOH 16 165 22 HOH HOH B . E 3 HOH 17 166 23 HOH HOH B . E 3 HOH 18 167 24 HOH HOH B . E 3 HOH 19 168 25 HOH HOH B . E 3 HOH 20 169 26 HOH HOH B . E 3 HOH 21 170 27 HOH HOH B . E 3 HOH 22 171 171 HOH HOH B . E 3 HOH 23 172 28 HOH HOH B . E 3 HOH 24 173 173 HOH HOH B . E 3 HOH 25 174 174 HOH HOH B . E 3 HOH 26 175 175 HOH HOH B . E 3 HOH 27 176 29 HOH HOH B . E 3 HOH 28 177 177 HOH HOH B . E 3 HOH 29 178 30 HOH HOH B . E 3 HOH 30 179 34 HOH HOH B . E 3 HOH 31 180 36 HOH HOH B . E 3 HOH 32 181 37 HOH HOH B . E 3 HOH 33 182 38 HOH HOH B . E 3 HOH 34 183 40 HOH HOH B . E 3 HOH 35 184 43 HOH HOH B . E 3 HOH 36 185 45 HOH HOH B . E 3 HOH 37 186 186 HOH HOH B . E 3 HOH 38 187 187 HOH HOH B . E 3 HOH 39 188 188 HOH HOH B . E 3 HOH 40 189 49 HOH HOH B . E 3 HOH 41 190 190 HOH HOH B . E 3 HOH 42 191 191 HOH HOH B . E 3 HOH 43 192 192 HOH HOH B . E 3 HOH 44 193 193 HOH HOH B . E 3 HOH 45 194 194 HOH HOH B . E 3 HOH 46 195 195 HOH HOH B . E 3 HOH 47 196 196 HOH HOH B . E 3 HOH 48 197 197 HOH HOH B . E 3 HOH 49 198 198 HOH HOH B . E 3 HOH 50 199 199 HOH HOH B . E 3 HOH 51 200 200 HOH HOH B . E 3 HOH 52 201 201 HOH HOH B . E 3 HOH 53 202 202 HOH HOH B . E 3 HOH 54 203 203 HOH HOH B . E 3 HOH 55 204 204 HOH HOH B . E 3 HOH 56 205 205 HOH HOH B . E 3 HOH 57 206 206 HOH HOH B . E 3 HOH 58 207 52 HOH HOH B . E 3 HOH 59 208 56 HOH HOH B . E 3 HOH 60 209 57 HOH HOH B . E 3 HOH 61 210 58 HOH HOH B . E 3 HOH 62 211 59 HOH HOH B . E 3 HOH 63 212 61 HOH HOH B . E 3 HOH 64 213 213 HOH HOH B . E 3 HOH 65 214 65 HOH HOH B . E 3 HOH 66 215 215 HOH HOH B . E 3 HOH 67 216 71 HOH HOH B . E 3 HOH 68 217 72 HOH HOH B . E 3 HOH 69 218 218 HOH HOH B . E 3 HOH 70 219 75 HOH HOH B . E 3 HOH 71 220 76 HOH HOH B . E 3 HOH 72 221 79 HOH HOH B . E 3 HOH 73 222 80 HOH HOH B . E 3 HOH 74 223 81 HOH HOH B . E 3 HOH 75 224 224 HOH HOH B . E 3 HOH 76 225 225 HOH HOH B . E 3 HOH 77 226 226 HOH HOH B . E 3 HOH 78 227 227 HOH HOH B . E 3 HOH 79 228 228 HOH HOH B . E 3 HOH 80 229 229 HOH HOH B . E 3 HOH 81 230 230 HOH HOH B . E 3 HOH 82 231 83 HOH HOH B . E 3 HOH 83 232 85 HOH HOH B . E 3 HOH 84 233 92 HOH HOH B . E 3 HOH 85 234 93 HOH HOH B . E 3 HOH 86 235 94 HOH HOH B . E 3 HOH 87 236 95 HOH HOH B . E 3 HOH 88 237 99 HOH HOH B . E 3 HOH 89 238 100 HOH HOH B . E 3 HOH 90 239 101 HOH HOH B . E 3 HOH 91 240 103 HOH HOH B . E 3 HOH 92 241 104 HOH HOH B . E 3 HOH 93 242 106 HOH HOH B . E 3 HOH 94 243 111 HOH HOH B . E 3 HOH 95 244 112 HOH HOH B . E 3 HOH 96 245 113 HOH HOH B . E 3 HOH 97 246 114 HOH HOH B . E 3 HOH 98 247 115 HOH HOH B . E 3 HOH 99 248 116 HOH HOH B . E 3 HOH 100 249 117 HOH HOH B . E 3 HOH 101 250 123 HOH HOH B . E 3 HOH 102 251 128 HOH HOH B . E 3 HOH 103 252 129 HOH HOH B . E 3 HOH 104 253 132 HOH HOH B . E 3 HOH 105 254 133 HOH HOH B . E 3 HOH 106 255 134 HOH HOH B . E 3 HOH 107 256 136 HOH HOH B . E 3 HOH 108 257 137 HOH HOH B . E 3 HOH 109 258 139 HOH HOH B . E 3 HOH 110 259 140 HOH HOH B . E 3 HOH 111 260 141 HOH HOH B . E 3 HOH 112 261 143 HOH HOH B . E 3 HOH 113 262 144 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA hexameric 6 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E 2 1,2,3 A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2200 ? 1 MORE -15 ? 1 'SSA (A^2)' 14410 ? 2 'ABSA (A^2)' 16530 ? 2 MORE -56 ? 2 'SSA (A^2)' 33290 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_645 -z+1,x-1/2,-y+1/2 0.0000000000 0.0000000000 -1.0000000000 111.3300000000 1.0000000000 0.0000000000 0.0000000000 -55.6650000000 0.0000000000 -1.0000000000 0.0000000000 55.6650000000 3 'crystal symmetry operation' 11_556 y+1/2,-z+1/2,-x+1 0.0000000000 1.0000000000 0.0000000000 55.6650000000 0.0000000000 0.0000000000 -1.0000000000 55.6650000000 -1.0000000000 0.0000000000 0.0000000000 111.3300000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 202 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-05-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ncs_dom_lim 6 3 'Structure model' struct_ref_seq_dif 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 4 3 'Structure model' '_struct_ncs_dom_lim.beg_label_asym_id' 5 3 'Structure model' '_struct_ncs_dom_lim.beg_label_comp_id' 6 3 'Structure model' '_struct_ncs_dom_lim.beg_label_seq_id' 7 3 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' 8 3 'Structure model' '_struct_ncs_dom_lim.end_label_asym_id' 9 3 'Structure model' '_struct_ncs_dom_lim.end_label_comp_id' 10 3 'Structure model' '_struct_ncs_dom_lim.end_label_seq_id' 11 3 'Structure model' '_struct_ref_seq_dif.details' 12 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 13 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 14 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 28.5866 -3.8417 69.9927 0.0767 0.1366 0.0263 0.0946 0.0193 0.0182 1.7389 1.5891 1.3271 0.4993 -0.0086 -0.2802 0.0771 0.0991 0.0577 0.1564 0.0627 0.1082 -0.1968 -0.2926 -0.1398 'X-RAY DIFFRACTION' 2 ? refined 16.2017 2.4173 85.4560 0.1834 0.2840 0.1378 0.1499 0.0916 -0.0260 6.6351 2.9795 12.3703 -0.2426 2.6952 -4.7023 0.2332 -0.0823 0.4197 0.1445 0.0343 0.2863 -0.3647 -0.8068 -0.2675 'X-RAY DIFFRACTION' 3 ? refined 23.6887 -6.7807 73.2864 0.0690 0.1967 0.0602 0.1018 0.0325 0.0259 2.2212 2.0143 2.5235 1.1796 0.0663 0.3579 0.0205 0.0932 0.0112 0.1184 0.0458 0.2408 -0.0702 -0.3704 -0.0663 'X-RAY DIFFRACTION' 4 ? refined 22.7800 -8.2113 71.1259 0.0417 0.1497 0.0521 0.0654 0.0268 0.0215 1.3354 1.4979 3.5501 -0.3109 -0.2901 0.2997 -0.0347 0.0871 0.0473 0.1520 0.0532 0.2337 -0.2192 -0.6195 -0.0185 'X-RAY DIFFRACTION' 5 ? refined 35.4142 2.3396 59.9858 0.1701 0.1550 0.0680 0.0925 0.0003 0.0337 1.7389 1.5028 0.8864 0.8087 0.2440 -0.1705 -0.0131 0.1836 0.1139 -0.0857 0.1184 0.0050 -0.2398 -0.2529 -0.1054 'X-RAY DIFFRACTION' 6 ? refined 29.1592 9.4822 41.2739 0.1761 0.2379 0.0832 0.0141 -0.0928 0.0786 2.9174 3.4984 11.6095 -1.4644 -0.9233 1.3531 0.0704 -0.0717 -0.0114 0.0804 0.1894 0.0094 -0.0353 -0.3506 -0.2598 'X-RAY DIFFRACTION' 7 ? refined 37.4237 6.3584 55.9230 0.1717 0.1479 0.0698 0.0810 0.0077 0.0627 2.0557 3.0157 1.7708 1.2185 0.8071 -0.0705 -0.0874 0.2763 0.2301 -0.0516 0.1528 -0.0274 -0.2905 -0.1298 -0.0654 'X-RAY DIFFRACTION' 8 ? refined 38.6767 8.1410 58.5088 0.1750 0.1013 0.0693 0.0655 0.0195 0.0634 1.2033 1.3707 2.9959 -0.2347 0.6965 0.1305 0.0132 0.1997 0.2316 -0.0564 0.0114 -0.0564 -0.5556 -0.2579 -0.0246 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1 ? ? A 40 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 41 ? ? A 62 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 63 ? ? A 90 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 91 ? ? A 147 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 B 1 ? ? B 40 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 B 41 ? ? B 62 ? ? ? ? 'X-RAY DIFFRACTION' 7 7 B 63 ? ? B 90 ? ? ? ? 'X-RAY DIFFRACTION' 8 8 B 91 ? ? B 147 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0109 ? 3 XDS 'data reduction' . ? 4 XSCALE 'data scaling' . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OH _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 TYR _pdbx_validate_close_contact.auth_seq_id_1 147 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 223 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.08 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 111 ? ? -113.64 59.72 2 1 ASN A 112 ? ? -97.76 33.01 3 1 ILE A 113 ? ? 84.99 -41.95 4 1 LYS B 111 ? ? -107.28 58.89 5 1 ASN B 112 ? ? -93.38 33.61 6 1 ILE B 113 ? ? 81.36 -47.45 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 134 ? CG ? A ASP 138 CG 2 1 Y 1 A ASP 134 ? OD1 ? A ASP 138 OD1 3 1 Y 1 A ASP 134 ? OD2 ? A ASP 138 OD2 4 1 Y 1 A LYS 143 ? CG ? A LYS 147 CG 5 1 Y 1 A LYS 143 ? CD ? A LYS 147 CD 6 1 Y 1 A LYS 143 ? CE ? A LYS 147 CE 7 1 Y 1 A LYS 143 ? NZ ? A LYS 147 NZ 8 1 Y 1 B LYS 41 ? CG ? B LYS 45 CG 9 1 Y 1 B LYS 41 ? CD ? B LYS 45 CD 10 1 Y 1 B LYS 41 ? CE ? B LYS 45 CE 11 1 Y 1 B LYS 41 ? NZ ? B LYS 45 NZ 12 1 Y 1 B LYS 78 ? CG ? B LYS 82 CG 13 1 Y 1 B LYS 78 ? CD ? B LYS 82 CD 14 1 Y 1 B LYS 78 ? CE ? B LYS 82 CE 15 1 Y 1 B LYS 78 ? NZ ? B LYS 82 NZ 16 1 Y 1 B ASP 133 ? CG ? B ASP 137 CG 17 1 Y 1 B ASP 133 ? OD1 ? B ASP 137 OD1 18 1 Y 1 B ASP 133 ? OD2 ? B ASP 137 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A PRO -2 ? A PRO 2 3 1 Y 1 A GLY -1 ? A GLY 3 4 1 Y 1 A SER 0 ? A SER 4 5 1 Y 1 B GLY -3 ? B GLY 1 6 1 Y 1 B PRO -2 ? B PRO 2 7 1 Y 1 B GLY -1 ? B GLY 3 8 1 Y 1 B SER 0 ? B SER 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 EDO C1 C N N 88 EDO O1 O N N 89 EDO C2 C N N 90 EDO O2 O N N 91 EDO H11 H N N 92 EDO H12 H N N 93 EDO HO1 H N N 94 EDO H21 H N N 95 EDO H22 H N N 96 EDO HO2 H N N 97 GLN N N N N 98 GLN CA C N S 99 GLN C C N N 100 GLN O O N N 101 GLN CB C N N 102 GLN CG C N N 103 GLN CD C N N 104 GLN OE1 O N N 105 GLN NE2 N N N 106 GLN OXT O N N 107 GLN H H N N 108 GLN H2 H N N 109 GLN HA H N N 110 GLN HB2 H N N 111 GLN HB3 H N N 112 GLN HG2 H N N 113 GLN HG3 H N N 114 GLN HE21 H N N 115 GLN HE22 H N N 116 GLN HXT H N N 117 GLU N N N N 118 GLU CA C N S 119 GLU C C N N 120 GLU O O N N 121 GLU CB C N N 122 GLU CG C N N 123 GLU CD C N N 124 GLU OE1 O N N 125 GLU OE2 O N N 126 GLU OXT O N N 127 GLU H H N N 128 GLU H2 H N N 129 GLU HA H N N 130 GLU HB2 H N N 131 GLU HB3 H N N 132 GLU HG2 H N N 133 GLU HG3 H N N 134 GLU HE2 H N N 135 GLU HXT H N N 136 GLY N N N N 137 GLY CA C N N 138 GLY C C N N 139 GLY O O N N 140 GLY OXT O N N 141 GLY H H N N 142 GLY H2 H N N 143 GLY HA2 H N N 144 GLY HA3 H N N 145 GLY HXT H N N 146 HIS N N N N 147 HIS CA C N S 148 HIS C C N N 149 HIS O O N N 150 HIS CB C N N 151 HIS CG C Y N 152 HIS ND1 N Y N 153 HIS CD2 C Y N 154 HIS CE1 C Y N 155 HIS NE2 N Y N 156 HIS OXT O N N 157 HIS H H N N 158 HIS H2 H N N 159 HIS HA H N N 160 HIS HB2 H N N 161 HIS HB3 H N N 162 HIS HD1 H N N 163 HIS HD2 H N N 164 HIS HE1 H N N 165 HIS HE2 H N N 166 HIS HXT H N N 167 HOH O O N N 168 HOH H1 H N N 169 HOH H2 H N N 170 ILE N N N N 171 ILE CA C N S 172 ILE C C N N 173 ILE O O N N 174 ILE CB C N S 175 ILE CG1 C N N 176 ILE CG2 C N N 177 ILE CD1 C N N 178 ILE OXT O N N 179 ILE H H N N 180 ILE H2 H N N 181 ILE HA H N N 182 ILE HB H N N 183 ILE HG12 H N N 184 ILE HG13 H N N 185 ILE HG21 H N N 186 ILE HG22 H N N 187 ILE HG23 H N N 188 ILE HD11 H N N 189 ILE HD12 H N N 190 ILE HD13 H N N 191 ILE HXT H N N 192 LEU N N N N 193 LEU CA C N S 194 LEU C C N N 195 LEU O O N N 196 LEU CB C N N 197 LEU CG C N N 198 LEU CD1 C N N 199 LEU CD2 C N N 200 LEU OXT O N N 201 LEU H H N N 202 LEU H2 H N N 203 LEU HA H N N 204 LEU HB2 H N N 205 LEU HB3 H N N 206 LEU HG H N N 207 LEU HD11 H N N 208 LEU HD12 H N N 209 LEU HD13 H N N 210 LEU HD21 H N N 211 LEU HD22 H N N 212 LEU HD23 H N N 213 LEU HXT H N N 214 LYS N N N N 215 LYS CA C N S 216 LYS C C N N 217 LYS O O N N 218 LYS CB C N N 219 LYS CG C N N 220 LYS CD C N N 221 LYS CE C N N 222 LYS NZ N N N 223 LYS OXT O N N 224 LYS H H N N 225 LYS H2 H N N 226 LYS HA H N N 227 LYS HB2 H N N 228 LYS HB3 H N N 229 LYS HG2 H N N 230 LYS HG3 H N N 231 LYS HD2 H N N 232 LYS HD3 H N N 233 LYS HE2 H N N 234 LYS HE3 H N N 235 LYS HZ1 H N N 236 LYS HZ2 H N N 237 LYS HZ3 H N N 238 LYS HXT H N N 239 MET N N N N 240 MET CA C N S 241 MET C C N N 242 MET O O N N 243 MET CB C N N 244 MET CG C N N 245 MET SD S N N 246 MET CE C N N 247 MET OXT O N N 248 MET H H N N 249 MET H2 H N N 250 MET HA H N N 251 MET HB2 H N N 252 MET HB3 H N N 253 MET HG2 H N N 254 MET HG3 H N N 255 MET HE1 H N N 256 MET HE2 H N N 257 MET HE3 H N N 258 MET HXT H N N 259 PHE N N N N 260 PHE CA C N S 261 PHE C C N N 262 PHE O O N N 263 PHE CB C N N 264 PHE CG C Y N 265 PHE CD1 C Y N 266 PHE CD2 C Y N 267 PHE CE1 C Y N 268 PHE CE2 C Y N 269 PHE CZ C Y N 270 PHE OXT O N N 271 PHE H H N N 272 PHE H2 H N N 273 PHE HA H N N 274 PHE HB2 H N N 275 PHE HB3 H N N 276 PHE HD1 H N N 277 PHE HD2 H N N 278 PHE HE1 H N N 279 PHE HE2 H N N 280 PHE HZ H N N 281 PHE HXT H N N 282 PRO N N N N 283 PRO CA C N S 284 PRO C C N N 285 PRO O O N N 286 PRO CB C N N 287 PRO CG C N N 288 PRO CD C N N 289 PRO OXT O N N 290 PRO H H N N 291 PRO HA H N N 292 PRO HB2 H N N 293 PRO HB3 H N N 294 PRO HG2 H N N 295 PRO HG3 H N N 296 PRO HD2 H N N 297 PRO HD3 H N N 298 PRO HXT H N N 299 SER N N N N 300 SER CA C N S 301 SER C C N N 302 SER O O N N 303 SER CB C N N 304 SER OG O N N 305 SER OXT O N N 306 SER H H N N 307 SER H2 H N N 308 SER HA H N N 309 SER HB2 H N N 310 SER HB3 H N N 311 SER HG H N N 312 SER HXT H N N 313 THR N N N N 314 THR CA C N S 315 THR C C N N 316 THR O O N N 317 THR CB C N R 318 THR OG1 O N N 319 THR CG2 C N N 320 THR OXT O N N 321 THR H H N N 322 THR H2 H N N 323 THR HA H N N 324 THR HB H N N 325 THR HG1 H N N 326 THR HG21 H N N 327 THR HG22 H N N 328 THR HG23 H N N 329 THR HXT H N N 330 TRP N N N N 331 TRP CA C N S 332 TRP C C N N 333 TRP O O N N 334 TRP CB C N N 335 TRP CG C Y N 336 TRP CD1 C Y N 337 TRP CD2 C Y N 338 TRP NE1 N Y N 339 TRP CE2 C Y N 340 TRP CE3 C Y N 341 TRP CZ2 C Y N 342 TRP CZ3 C Y N 343 TRP CH2 C Y N 344 TRP OXT O N N 345 TRP H H N N 346 TRP H2 H N N 347 TRP HA H N N 348 TRP HB2 H N N 349 TRP HB3 H N N 350 TRP HD1 H N N 351 TRP HE1 H N N 352 TRP HE3 H N N 353 TRP HZ2 H N N 354 TRP HZ3 H N N 355 TRP HH2 H N N 356 TRP HXT H N N 357 TYR N N N N 358 TYR CA C N S 359 TYR C C N N 360 TYR O O N N 361 TYR CB C N N 362 TYR CG C Y N 363 TYR CD1 C Y N 364 TYR CD2 C Y N 365 TYR CE1 C Y N 366 TYR CE2 C Y N 367 TYR CZ C Y N 368 TYR OH O N N 369 TYR OXT O N N 370 TYR H H N N 371 TYR H2 H N N 372 TYR HA H N N 373 TYR HB2 H N N 374 TYR HB3 H N N 375 TYR HD1 H N N 376 TYR HD2 H N N 377 TYR HE1 H N N 378 TYR HE2 H N N 379 TYR HH H N N 380 TYR HXT H N N 381 VAL N N N N 382 VAL CA C N S 383 VAL C C N N 384 VAL O O N N 385 VAL CB C N N 386 VAL CG1 C N N 387 VAL CG2 C N N 388 VAL OXT O N N 389 VAL H H N N 390 VAL H2 H N N 391 VAL HA H N N 392 VAL HB H N N 393 VAL HG11 H N N 394 VAL HG12 H N N 395 VAL HG13 H N N 396 VAL HG21 H N N 397 VAL HG22 H N N 398 VAL HG23 H N N 399 VAL HXT H N N 400 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 EDO C1 O1 sing N N 83 EDO C1 C2 sing N N 84 EDO C1 H11 sing N N 85 EDO C1 H12 sing N N 86 EDO O1 HO1 sing N N 87 EDO C2 O2 sing N N 88 EDO C2 H21 sing N N 89 EDO C2 H22 sing N N 90 EDO O2 HO2 sing N N 91 GLN N CA sing N N 92 GLN N H sing N N 93 GLN N H2 sing N N 94 GLN CA C sing N N 95 GLN CA CB sing N N 96 GLN CA HA sing N N 97 GLN C O doub N N 98 GLN C OXT sing N N 99 GLN CB CG sing N N 100 GLN CB HB2 sing N N 101 GLN CB HB3 sing N N 102 GLN CG CD sing N N 103 GLN CG HG2 sing N N 104 GLN CG HG3 sing N N 105 GLN CD OE1 doub N N 106 GLN CD NE2 sing N N 107 GLN NE2 HE21 sing N N 108 GLN NE2 HE22 sing N N 109 GLN OXT HXT sing N N 110 GLU N CA sing N N 111 GLU N H sing N N 112 GLU N H2 sing N N 113 GLU CA C sing N N 114 GLU CA CB sing N N 115 GLU CA HA sing N N 116 GLU C O doub N N 117 GLU C OXT sing N N 118 GLU CB CG sing N N 119 GLU CB HB2 sing N N 120 GLU CB HB3 sing N N 121 GLU CG CD sing N N 122 GLU CG HG2 sing N N 123 GLU CG HG3 sing N N 124 GLU CD OE1 doub N N 125 GLU CD OE2 sing N N 126 GLU OE2 HE2 sing N N 127 GLU OXT HXT sing N N 128 GLY N CA sing N N 129 GLY N H sing N N 130 GLY N H2 sing N N 131 GLY CA C sing N N 132 GLY CA HA2 sing N N 133 GLY CA HA3 sing N N 134 GLY C O doub N N 135 GLY C OXT sing N N 136 GLY OXT HXT sing N N 137 HIS N CA sing N N 138 HIS N H sing N N 139 HIS N H2 sing N N 140 HIS CA C sing N N 141 HIS CA CB sing N N 142 HIS CA HA sing N N 143 HIS C O doub N N 144 HIS C OXT sing N N 145 HIS CB CG sing N N 146 HIS CB HB2 sing N N 147 HIS CB HB3 sing N N 148 HIS CG ND1 sing Y N 149 HIS CG CD2 doub Y N 150 HIS ND1 CE1 doub Y N 151 HIS ND1 HD1 sing N N 152 HIS CD2 NE2 sing Y N 153 HIS CD2 HD2 sing N N 154 HIS CE1 NE2 sing Y N 155 HIS CE1 HE1 sing N N 156 HIS NE2 HE2 sing N N 157 HIS OXT HXT sing N N 158 HOH O H1 sing N N 159 HOH O H2 sing N N 160 ILE N CA sing N N 161 ILE N H sing N N 162 ILE N H2 sing N N 163 ILE CA C sing N N 164 ILE CA CB sing N N 165 ILE CA HA sing N N 166 ILE C O doub N N 167 ILE C OXT sing N N 168 ILE CB CG1 sing N N 169 ILE CB CG2 sing N N 170 ILE CB HB sing N N 171 ILE CG1 CD1 sing N N 172 ILE CG1 HG12 sing N N 173 ILE CG1 HG13 sing N N 174 ILE CG2 HG21 sing N N 175 ILE CG2 HG22 sing N N 176 ILE CG2 HG23 sing N N 177 ILE CD1 HD11 sing N N 178 ILE CD1 HD12 sing N N 179 ILE CD1 HD13 sing N N 180 ILE OXT HXT sing N N 181 LEU N CA sing N N 182 LEU N H sing N N 183 LEU N H2 sing N N 184 LEU CA C sing N N 185 LEU CA CB sing N N 186 LEU CA HA sing N N 187 LEU C O doub N N 188 LEU C OXT sing N N 189 LEU CB CG sing N N 190 LEU CB HB2 sing N N 191 LEU CB HB3 sing N N 192 LEU CG CD1 sing N N 193 LEU CG CD2 sing N N 194 LEU CG HG sing N N 195 LEU CD1 HD11 sing N N 196 LEU CD1 HD12 sing N N 197 LEU CD1 HD13 sing N N 198 LEU CD2 HD21 sing N N 199 LEU CD2 HD22 sing N N 200 LEU CD2 HD23 sing N N 201 LEU OXT HXT sing N N 202 LYS N CA sing N N 203 LYS N H sing N N 204 LYS N H2 sing N N 205 LYS CA C sing N N 206 LYS CA CB sing N N 207 LYS CA HA sing N N 208 LYS C O doub N N 209 LYS C OXT sing N N 210 LYS CB CG sing N N 211 LYS CB HB2 sing N N 212 LYS CB HB3 sing N N 213 LYS CG CD sing N N 214 LYS CG HG2 sing N N 215 LYS CG HG3 sing N N 216 LYS CD CE sing N N 217 LYS CD HD2 sing N N 218 LYS CD HD3 sing N N 219 LYS CE NZ sing N N 220 LYS CE HE2 sing N N 221 LYS CE HE3 sing N N 222 LYS NZ HZ1 sing N N 223 LYS NZ HZ2 sing N N 224 LYS NZ HZ3 sing N N 225 LYS OXT HXT sing N N 226 MET N CA sing N N 227 MET N H sing N N 228 MET N H2 sing N N 229 MET CA C sing N N 230 MET CA CB sing N N 231 MET CA HA sing N N 232 MET C O doub N N 233 MET C OXT sing N N 234 MET CB CG sing N N 235 MET CB HB2 sing N N 236 MET CB HB3 sing N N 237 MET CG SD sing N N 238 MET CG HG2 sing N N 239 MET CG HG3 sing N N 240 MET SD CE sing N N 241 MET CE HE1 sing N N 242 MET CE HE2 sing N N 243 MET CE HE3 sing N N 244 MET OXT HXT sing N N 245 PHE N CA sing N N 246 PHE N H sing N N 247 PHE N H2 sing N N 248 PHE CA C sing N N 249 PHE CA CB sing N N 250 PHE CA HA sing N N 251 PHE C O doub N N 252 PHE C OXT sing N N 253 PHE CB CG sing N N 254 PHE CB HB2 sing N N 255 PHE CB HB3 sing N N 256 PHE CG CD1 doub Y N 257 PHE CG CD2 sing Y N 258 PHE CD1 CE1 sing Y N 259 PHE CD1 HD1 sing N N 260 PHE CD2 CE2 doub Y N 261 PHE CD2 HD2 sing N N 262 PHE CE1 CZ doub Y N 263 PHE CE1 HE1 sing N N 264 PHE CE2 CZ sing Y N 265 PHE CE2 HE2 sing N N 266 PHE CZ HZ sing N N 267 PHE OXT HXT sing N N 268 PRO N CA sing N N 269 PRO N CD sing N N 270 PRO N H sing N N 271 PRO CA C sing N N 272 PRO CA CB sing N N 273 PRO CA HA sing N N 274 PRO C O doub N N 275 PRO C OXT sing N N 276 PRO CB CG sing N N 277 PRO CB HB2 sing N N 278 PRO CB HB3 sing N N 279 PRO CG CD sing N N 280 PRO CG HG2 sing N N 281 PRO CG HG3 sing N N 282 PRO CD HD2 sing N N 283 PRO CD HD3 sing N N 284 PRO OXT HXT sing N N 285 SER N CA sing N N 286 SER N H sing N N 287 SER N H2 sing N N 288 SER CA C sing N N 289 SER CA CB sing N N 290 SER CA HA sing N N 291 SER C O doub N N 292 SER C OXT sing N N 293 SER CB OG sing N N 294 SER CB HB2 sing N N 295 SER CB HB3 sing N N 296 SER OG HG sing N N 297 SER OXT HXT sing N N 298 THR N CA sing N N 299 THR N H sing N N 300 THR N H2 sing N N 301 THR CA C sing N N 302 THR CA CB sing N N 303 THR CA HA sing N N 304 THR C O doub N N 305 THR C OXT sing N N 306 THR CB OG1 sing N N 307 THR CB CG2 sing N N 308 THR CB HB sing N N 309 THR OG1 HG1 sing N N 310 THR CG2 HG21 sing N N 311 THR CG2 HG22 sing N N 312 THR CG2 HG23 sing N N 313 THR OXT HXT sing N N 314 TRP N CA sing N N 315 TRP N H sing N N 316 TRP N H2 sing N N 317 TRP CA C sing N N 318 TRP CA CB sing N N 319 TRP CA HA sing N N 320 TRP C O doub N N 321 TRP C OXT sing N N 322 TRP CB CG sing N N 323 TRP CB HB2 sing N N 324 TRP CB HB3 sing N N 325 TRP CG CD1 doub Y N 326 TRP CG CD2 sing Y N 327 TRP CD1 NE1 sing Y N 328 TRP CD1 HD1 sing N N 329 TRP CD2 CE2 doub Y N 330 TRP CD2 CE3 sing Y N 331 TRP NE1 CE2 sing Y N 332 TRP NE1 HE1 sing N N 333 TRP CE2 CZ2 sing Y N 334 TRP CE3 CZ3 doub Y N 335 TRP CE3 HE3 sing N N 336 TRP CZ2 CH2 doub Y N 337 TRP CZ2 HZ2 sing N N 338 TRP CZ3 CH2 sing Y N 339 TRP CZ3 HZ3 sing N N 340 TRP CH2 HH2 sing N N 341 TRP OXT HXT sing N N 342 TYR N CA sing N N 343 TYR N H sing N N 344 TYR N H2 sing N N 345 TYR CA C sing N N 346 TYR CA CB sing N N 347 TYR CA HA sing N N 348 TYR C O doub N N 349 TYR C OXT sing N N 350 TYR CB CG sing N N 351 TYR CB HB2 sing N N 352 TYR CB HB3 sing N N 353 TYR CG CD1 doub Y N 354 TYR CG CD2 sing Y N 355 TYR CD1 CE1 sing Y N 356 TYR CD1 HD1 sing N N 357 TYR CD2 CE2 doub Y N 358 TYR CD2 HD2 sing N N 359 TYR CE1 CZ doub Y N 360 TYR CE1 HE1 sing N N 361 TYR CE2 CZ sing Y N 362 TYR CE2 HE2 sing N N 363 TYR CZ OH sing N N 364 TYR OH HH sing N N 365 TYR OXT HXT sing N N 366 VAL N CA sing N N 367 VAL N H sing N N 368 VAL N H2 sing N N 369 VAL CA C sing N N 370 VAL CA CB sing N N 371 VAL CA HA sing N N 372 VAL C O doub N N 373 VAL C OXT sing N N 374 VAL CB CG1 sing N N 375 VAL CB CG2 sing N N 376 VAL CB HB sing N N 377 VAL CG1 HG11 sing N N 378 VAL CG1 HG12 sing N N 379 VAL CG1 HG13 sing N N 380 VAL CG2 HG21 sing N N 381 VAL CG2 HG22 sing N N 382 VAL CG2 HG23 sing N N 383 VAL OXT HXT sing N N 384 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1NSQ _pdbx_initial_refinement_model.details '1NSQ (Drosophila NDP kinase)' #