HEADER TRANSFERASE/TRANSFERASE INHIBITOR 27-APR-10 3MQ8 OBSLTE 03-OCT-12 3MQ8 4H70 TITLE HUMAN PLK1-PBD IN COMPLEX WITH THYMOQUINONE AT THE PHOPHOPEPTIDE TITLE 2 BINDING SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PLK1; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: POLO-BOX DOMAIN, UNP RESIDUES 367-603; COMPND 5 SYNONYM: POLO-LIKE KINASE 1, PLK-1, SERINE/THREONINE-PROTEIN KINASE COMPND 6 13, STPK13; COMPND 7 EC: 2.7.11.21; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLK1, PLK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS BETA BARREL, TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Z.YIN,P.H.REHSE REVDAT 2 03-OCT-12 3MQ8 1 OBSLTE VERSN REVDAT 1 27-APR-11 3MQ8 0 JRNL AUTH Z.YIN,P.H.REHSE JRNL TITL IRREVERSIBLY BLOCK THE HPLK1 SUBSTRATE RECOGNITION: A JRNL TITL 2 STRUCTURAL AND KINETIC MODEL OF SLOW, TIGHT BUT NON-COVALENT JRNL TITL 3 BINDING OF POLOXIME JRNL TITL 4 ((E)-4-(HYDROXYIMINO)-2-ISOPROPYL-5-METHYLCYCLOHEXA-2,5- JRNL TITL 5 DIENONE) TO HPLK1 POLO-BOX DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 10576 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 531 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 754 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.3810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3519 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 103 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.452 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.375 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 40.979 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.872 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.809 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3609 ; 0.005 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4881 ; 0.844 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 436 ; 4.540 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;27.581 ;22.988 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 628 ;14.241 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;15.951 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 543 ; 0.055 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2699 ; 0.002 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2187 ; 0.059 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3515 ; 0.112 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1422 ; 0.154 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1366 ; 0.268 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 371 B 594 REMARK 3 ORIGIN FOR THE GROUP (A): 6.2215 9.6387 35.1987 REMARK 3 T TENSOR REMARK 3 T11: 0.0892 T22: 0.1621 REMARK 3 T33: 0.1071 T12: -0.0085 REMARK 3 T13: 0.0160 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.5279 L22: 4.7863 REMARK 3 L33: 2.2387 L12: -0.7309 REMARK 3 L13: 0.7852 L23: -3.0582 REMARK 3 S TENSOR REMARK 3 S11: 0.1053 S12: 0.0514 S13: -0.0703 REMARK 3 S21: -0.1446 S22: -0.1069 S23: 0.0071 REMARK 3 S31: 0.1876 S32: 0.0688 S33: 0.0016 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 373 A 593 REMARK 3 ORIGIN FOR THE GROUP (A): 8.3296 -9.8907 0.9311 REMARK 3 T TENSOR REMARK 3 T11: 0.0627 T22: 0.0934 REMARK 3 T33: 0.0231 T12: -0.0160 REMARK 3 T13: 0.0025 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 1.1184 L22: 3.4864 REMARK 3 L33: 1.5513 L12: -0.7873 REMARK 3 L13: -0.2935 L23: 1.5549 REMARK 3 S TENSOR REMARK 3 S11: 0.0527 S12: -0.0966 S13: 0.1031 REMARK 3 S21: 0.0269 S22: -0.0386 S23: -0.0593 REMARK 3 S31: -0.0913 S32: -0.0007 S33: -0.0141 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MQ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-MAY-10. REMARK 100 THE RCSB ID CODE IS RCSB058863. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5417 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10576 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 51.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.15400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.38700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1UMW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4M SODIUM POTASSIUM TARTRATE, 50MM REMARK 280 MES PH 6.5, 100MM HEPES PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 51.07500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 364 REMARK 465 ASN B 365 REMARK 465 ALA B 366 REMARK 465 GLY B 367 REMARK 465 GLU B 368 REMARK 465 VAL B 369 REMARK 465 VAL B 370 REMARK 465 GLU B 501 REMARK 465 GLY B 502 REMARK 465 ASP B 503 REMARK 465 GLU B 504 REMARK 465 SER B 595 REMARK 465 ALA B 596 REMARK 465 SER B 597 REMARK 465 ASN B 598 REMARK 465 ARG B 599 REMARK 465 LEU B 600 REMARK 465 LYS B 601 REMARK 465 ALA B 602 REMARK 465 SER B 603 REMARK 465 SER A 364 REMARK 465 ASN A 365 REMARK 465 ALA A 366 REMARK 465 GLY A 367 REMARK 465 GLU A 368 REMARK 465 VAL A 369 REMARK 465 VAL A 370 REMARK 465 ASP A 371 REMARK 465 CYS A 372 REMARK 465 GLU A 504 REMARK 465 ARG A 594 REMARK 465 SER A 595 REMARK 465 ALA A 596 REMARK 465 SER A 597 REMARK 465 ASN A 598 REMARK 465 ARG A 599 REMARK 465 LEU A 600 REMARK 465 LYS A 601 REMARK 465 ALA A 602 REMARK 465 SER A 603 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 474 CG CD CE NZ REMARK 470 ARG B 507 CD NE CZ NH1 NH2 REMARK 470 ARG B 518 CB CG CD NE CZ NH1 NH2 REMARK 470 GLN B 536 CB CG CD OE1 NE2 REMARK 470 LYS B 574 CG CD CE NZ REMARK 470 ARG B 594 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 379 CG CD OE1 NE2 REMARK 470 HIS A 468 CB CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 497 CG1 CD1 REMARK 470 ASP A 503 CG OD1 OD2 REMARK 470 GLN A 536 CB CG CD OE1 NE2 REMARK 470 GLU A 555 CG CD OE1 OE2 REMARK 470 ARG A 584 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 420 -32.18 -137.92 REMARK 500 TYR B 421 -53.82 -122.11 REMARK 500 ASN B 430 -4.43 75.16 REMARK 500 SER B 439 -1.53 69.44 REMARK 500 ASP B 449 -44.08 -132.01 REMARK 500 THR B 517 -163.44 -110.58 REMARK 500 LYS A 420 -52.68 -140.79 REMARK 500 ASN A 430 -7.01 77.00 REMARK 500 SER A 439 -1.98 71.91 REMARK 500 ASP A 449 -38.92 -138.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMW A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 604 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MHN RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH POLOXIME AND A GLYCEROL AT THE REMARK 900 BINDING SITE REMARK 900 RELATED ID: 3MHQ RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH A GLYCEROL AT THE BINDING SITE DBREF 3MQ8 B 367 603 UNP P53350 PLK1_HUMAN 367 603 DBREF 3MQ8 A 367 603 UNP P53350 PLK1_HUMAN 367 603 SEQADV 3MQ8 SER B 364 UNP P53350 EXPRESSION TAG SEQADV 3MQ8 ASN B 365 UNP P53350 EXPRESSION TAG SEQADV 3MQ8 ALA B 366 UNP P53350 EXPRESSION TAG SEQADV 3MQ8 SER A 364 UNP P53350 EXPRESSION TAG SEQADV 3MQ8 ASN A 365 UNP P53350 EXPRESSION TAG SEQADV 3MQ8 ALA A 366 UNP P53350 EXPRESSION TAG SEQRES 1 B 240 SER ASN ALA GLY GLU VAL VAL ASP CYS HIS LEU SER ASP SEQRES 2 B 240 MET LEU GLN GLN LEU HIS SER VAL ASN ALA SER LYS PRO SEQRES 3 B 240 SER GLU ARG GLY LEU VAL ARG GLN GLU GLU ALA GLU ASP SEQRES 4 B 240 PRO ALA CYS ILE PRO ILE PHE TRP VAL SER LYS TRP VAL SEQRES 5 B 240 ASP TYR SER ASP LYS TYR GLY LEU GLY TYR GLN LEU CYS SEQRES 6 B 240 ASP ASN SER VAL GLY VAL LEU PHE ASN ASP SER THR ARG SEQRES 7 B 240 LEU ILE LEU TYR ASN ASP GLY ASP SER LEU GLN TYR ILE SEQRES 8 B 240 GLU ARG ASP GLY THR GLU SER TYR LEU THR VAL SER SER SEQRES 9 B 240 HIS PRO ASN SER LEU MET LYS LYS ILE THR LEU LEU LYS SEQRES 10 B 240 TYR PHE ARG ASN TYR MET SER GLU HIS LEU LEU LYS ALA SEQRES 11 B 240 GLY ALA ASN ILE THR PRO ARG GLU GLY ASP GLU LEU ALA SEQRES 12 B 240 ARG LEU PRO TYR LEU ARG THR TRP PHE ARG THR ARG SER SEQRES 13 B 240 ALA ILE ILE LEU HIS LEU SER ASN GLY SER VAL GLN ILE SEQRES 14 B 240 ASN PHE PHE GLN ASP HIS THR LYS LEU ILE LEU CYS PRO SEQRES 15 B 240 LEU MET ALA ALA VAL THR TYR ILE ASP GLU LYS ARG ASP SEQRES 16 B 240 PHE ARG THR TYR ARG LEU SER LEU LEU GLU GLU TYR GLY SEQRES 17 B 240 CYS CYS LYS GLU LEU ALA SER ARG LEU ARG TYR ALA ARG SEQRES 18 B 240 THR MET VAL ASP LYS LEU LEU SER SER ARG SER ALA SER SEQRES 19 B 240 ASN ARG LEU LYS ALA SER SEQRES 1 A 240 SER ASN ALA GLY GLU VAL VAL ASP CYS HIS LEU SER ASP SEQRES 2 A 240 MET LEU GLN GLN LEU HIS SER VAL ASN ALA SER LYS PRO SEQRES 3 A 240 SER GLU ARG GLY LEU VAL ARG GLN GLU GLU ALA GLU ASP SEQRES 4 A 240 PRO ALA CYS ILE PRO ILE PHE TRP VAL SER LYS TRP VAL SEQRES 5 A 240 ASP TYR SER ASP LYS TYR GLY LEU GLY TYR GLN LEU CYS SEQRES 6 A 240 ASP ASN SER VAL GLY VAL LEU PHE ASN ASP SER THR ARG SEQRES 7 A 240 LEU ILE LEU TYR ASN ASP GLY ASP SER LEU GLN TYR ILE SEQRES 8 A 240 GLU ARG ASP GLY THR GLU SER TYR LEU THR VAL SER SER SEQRES 9 A 240 HIS PRO ASN SER LEU MET LYS LYS ILE THR LEU LEU LYS SEQRES 10 A 240 TYR PHE ARG ASN TYR MET SER GLU HIS LEU LEU LYS ALA SEQRES 11 A 240 GLY ALA ASN ILE THR PRO ARG GLU GLY ASP GLU LEU ALA SEQRES 12 A 240 ARG LEU PRO TYR LEU ARG THR TRP PHE ARG THR ARG SER SEQRES 13 A 240 ALA ILE ILE LEU HIS LEU SER ASN GLY SER VAL GLN ILE SEQRES 14 A 240 ASN PHE PHE GLN ASP HIS THR LYS LEU ILE LEU CYS PRO SEQRES 15 A 240 LEU MET ALA ALA VAL THR TYR ILE ASP GLU LYS ARG ASP SEQRES 16 A 240 PHE ARG THR TYR ARG LEU SER LEU LEU GLU GLU TYR GLY SEQRES 17 A 240 CYS CYS LYS GLU LEU ALA SER ARG LEU ARG TYR ALA ARG SEQRES 18 A 240 THR MET VAL ASP LYS LEU LEU SER SER ARG SER ALA SER SEQRES 19 A 240 ASN ARG LEU LYS ALA SER HET IMW A 1 12 HET GOL A 604 6 HETNAM IMW 2-METHYL-5-(1-METHYLETHYL)CYCLOHEXA-2,5-DIENE-1,4-DIONE HETNAM GOL GLYCEROL HETSYN IMW THYMOQUINONE, 2-ISOPROPYL-5-METHYLBENZO-1,4-QUINONE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 IMW C10 H12 O2 FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *103(H2 O) HELIX 1 1 ASP B 371 ALA B 386 1 16 HELIX 2 2 LYS B 388 ARG B 392 5 5 HELIX 3 3 ARG B 396 GLU B 401 5 6 HELIX 4 4 ASP B 402 ILE B 406 5 5 HELIX 5 5 SER B 466 HIS B 468 5 3 HELIX 6 6 LEU B 472 LEU B 490 1 19 HELIX 7 7 LEU B 564 GLY B 571 1 8 HELIX 8 8 CYS B 573 SER B 593 1 21 HELIX 9 9 HIS A 373 SER A 387 1 15 HELIX 10 10 ARG A 396 GLU A 401 5 6 HELIX 11 11 LEU A 472 LEU A 490 1 19 HELIX 12 12 LEU A 564 GLY A 571 1 8 HELIX 13 13 CYS A 573 SER A 592 1 20 SHEET 1 A 6 VAL B 411 TYR B 417 0 SHEET 2 A 6 GLY B 422 LEU B 427 -1 O GLY B 424 N VAL B 415 SHEET 3 A 6 VAL B 432 PHE B 436 -1 O GLY B 433 N TYR B 425 SHEET 4 A 6 ARG B 441 LEU B 444 -1 O LEU B 444 N VAL B 432 SHEET 5 A 6 SER B 450 ILE B 454 -1 O ILE B 454 N ARG B 441 SHEET 6 A 6 GLU B 460 THR B 464 -1 O LEU B 463 N LEU B 451 SHEET 1 B 6 LEU B 511 ARG B 516 0 SHEET 2 B 6 ALA B 520 LEU B 525 -1 O ILE B 522 N PHE B 515 SHEET 3 B 6 VAL B 530 PHE B 534 -1 O GLN B 531 N LEU B 523 SHEET 4 B 6 LYS B 540 CYS B 544 -1 O LEU B 543 N VAL B 530 SHEET 5 B 6 ALA B 549 ILE B 553 -1 O ALA B 549 N CYS B 544 SHEET 6 B 6 PHE B 559 ARG B 563 -1 O TYR B 562 N VAL B 550 SHEET 1 C 6 VAL A 411 ASP A 416 0 SHEET 2 C 6 GLY A 422 LEU A 427 -1 O GLN A 426 N LYS A 413 SHEET 3 C 6 VAL A 432 PHE A 436 -1 O GLY A 433 N TYR A 425 SHEET 4 C 6 ARG A 441 LEU A 444 -1 O LEU A 444 N VAL A 432 SHEET 5 C 6 SER A 450 ILE A 454 -1 O ILE A 454 N ARG A 441 SHEET 6 C 6 GLU A 460 THR A 464 -1 O LEU A 463 N LEU A 451 SHEET 1 D 6 LEU A 511 ARG A 516 0 SHEET 2 D 6 ALA A 520 LEU A 525 -1 O ILE A 522 N PHE A 515 SHEET 3 D 6 VAL A 530 PHE A 534 -1 O GLN A 531 N LEU A 523 SHEET 4 D 6 LYS A 540 CYS A 544 -1 O LEU A 543 N VAL A 530 SHEET 5 D 6 ALA A 549 ILE A 553 -1 O ALA A 549 N CYS A 544 SHEET 6 D 6 PHE A 559 ARG A 563 -1 O TYR A 562 N VAL A 550 SITE 1 AC1 11 HOH A 6 HOH A 65 GLU A 460 LEU A 491 SITE 2 AC1 11 LYS A 492 ALA A 493 ARG A 507 HIS A 538 SITE 3 AC1 11 LYS A 540 ARG A 557 GOL A 604 SITE 1 AC2 4 IMW A 1 TRP A 414 THR A 459 GLU A 460 CRYST1 33.260 102.150 67.740 90.00 93.96 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030066 0.000000 0.002081 0.00000 SCALE2 0.000000 0.009790 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014798 0.00000