HEADER TRANSFERASE 28-APR-10 3MQD TITLE CRYSTAL STRUCTURE OF BETA-KETOACYL SYNTHASE FROM BRUCELLA MELITENSIS TITLE 2 WITH FOL 0758, (1-METHYL-1H-INDAZOL-3-YL) METHANOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-KETOACYL SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.3.1.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA MELITENSIS BIOVAR ABORTUS; SOURCE 3 ORGANISM_TAXID: 359391; SOURCE 4 STRAIN: ABORTUS 2308; SOURCE 5 GENE: FABB, BAB1_2173; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, ALS COLLABORATIVE CRYSTALLOGRAPHY, BETA-KETOACYL SYNTHASE, KEYWDS 2 BRUCELLA MELITENSIS, FRAGMENTS OF LIFE, STRUCTURAL GENOMICS, SEATTLE KEYWDS 3 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 5 06-SEP-23 3MQD 1 REMARK REVDAT 4 26-JUL-23 3MQD 1 JRNL REMARK SEQADV LINK REVDAT 3 21-AUG-19 3MQD 1 JRNL REVDAT 2 20-JUN-12 3MQD 1 REMARK VERSN REVDAT 1 09-JUN-10 3MQD 0 JRNL AUTH E.I.PATTERSON,J.D.NANSON,J.ABENDROTH,C.BRYAN,B.SANKARAN, JRNL AUTH 2 P.J.MYLER,J.K.FORWOOD JRNL TITL STRUCTURAL CHARACTERIZATION OF BETA-KETOACYL ACP SYNTHASE I JRNL TITL 2 BOUND TO PLATENCIN AND FRAGMENT SCREENING MOLECULES AT TWO JRNL TITL 3 SUBSTRATE BINDING SITES. JRNL REF PROTEINS V. 88 47 2020 JRNL REFN ESSN 1097-0134 JRNL PMID 31237717 JRNL DOI 10.1002/PROT.25765 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 111141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.113 REMARK 3 R VALUE (WORKING SET) : 0.112 REMARK 3 FREE R VALUE : 0.133 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5562 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7795 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.1700 REMARK 3 BIN FREE R VALUE SET COUNT : 405 REMARK 3 BIN FREE R VALUE : 0.2110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3012 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 454 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 7.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.19000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.032 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.031 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.017 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.821 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3246 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2188 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4422 ; 1.693 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5356 ; 1.315 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 453 ; 6.464 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;39.148 ;23.824 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 552 ;11.459 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;15.929 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 494 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3746 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 666 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2082 ; 1.777 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 866 ; 2.414 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3352 ; 2.535 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1164 ; 3.772 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1045 ; 5.373 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3246 ; 1.735 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3MQD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058868. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM Q315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 111226 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 4181.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NATIVE STRUCTURE, 3LRF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MD PACT SCREEN, H12: 20% PEG 3350, REMARK 280 100MM BISTRISPROPANE PH 8.5, 200MM NA-MALONATE; CRYSTAL SOAKED REMARK 280 100MM MES PH 6.5, 250MM NACL, 30% PEG 3350, 10% GLYCEROL; REMARK 280 BRABA.00113.A AT 22.9MG/ML, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K, PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 39.03500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.81000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 39.03500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.81000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOMOLECULE: NULL REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK 300 REMARK: BIOLOGICAL UNIT IS A DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 39.73577 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 62.87556 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 45 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 LYS A 208 CG CD CE NZ REMARK 470 LYS A 376 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 469 O HOH A 473 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 418 O HOH A 761 4646 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 91 CG GLU A 91 CD 0.103 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 27 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 PHE A 44 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 PHE A 44 CB - CG - CD1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 277 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 107 -159.46 -85.99 REMARK 500 SER A 159 42.52 -163.12 REMARK 500 ALA A 160 -129.67 56.20 REMARK 500 ARG A 218 60.45 -155.96 REMARK 500 TYR A 220 -6.65 79.09 REMARK 500 ASP A 225 27.13 -142.72 REMARK 500 TYR A 265 -80.24 -136.31 REMARK 500 ALA A 297 106.20 -9.16 REMARK 500 SER A 299 33.64 80.45 REMARK 500 LEU A 335 -118.38 62.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 283 O REMARK 620 2 VAL A 286 O 84.2 REMARK 620 3 HOH A 478 O 87.9 168.5 REMARK 620 4 HOH A 521 O 107.4 81.0 109.4 REMARK 620 5 HOH A 795 O 82.7 79.0 91.8 156.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 500 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 294 OD1 REMARK 620 2 ASN A 294 O 79.8 REMARK 620 3 PRO A 295 O 82.7 72.9 REMARK 620 4 GLU A 342 OE1 82.2 156.9 90.6 REMARK 620 5 SER A 388 OG 90.9 86.3 159.0 108.4 REMARK 620 6 ASN A 389 O 170.7 98.4 88.0 97.1 98.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3MQ A 499 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LRF RELATED DB: PDB REMARK 900 NATIVE STRUCTURE REMARK 900 RELATED ID: BRABA.00113.A RELATED DB: TARGETDB DBREF 3MQD A 1 407 UNP Q2YQQ9 Q2YQQ9_BRUA2 1 407 SEQADV 3MQD MET A -20 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3MQD ALA A -19 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3MQD HIS A -18 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3MQD HIS A -17 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3MQD HIS A -16 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3MQD HIS A -15 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3MQD HIS A -14 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3MQD HIS A -13 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3MQD MET A -12 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3MQD GLY A -11 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3MQD THR A -10 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3MQD LEU A -9 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3MQD GLU A -8 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3MQD ALA A -7 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3MQD GLN A -6 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3MQD THR A -5 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3MQD GLN A -4 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3MQD GLY A -3 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3MQD PRO A -2 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3MQD GLY A -1 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3MQD SER A 0 UNP Q2YQQ9 EXPRESSION TAG SEQRES 1 A 428 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 428 ALA GLN THR GLN GLY PRO GLY SER MET ARG ARG VAL VAL SEQRES 3 A 428 VAL THR GLY MET GLY ILE VAL SER SER ILE GLY SER ASN SEQRES 4 A 428 THR GLU GLU VAL THR ALA SER LEU ARG GLU ALA LYS SER SEQRES 5 A 428 GLY ILE SER ARG ALA GLU GLU TYR ALA GLU LEU GLY PHE SEQRES 6 A 428 ARG CYS GLN VAL HIS GLY ALA PRO ASP ILE ASP ILE GLU SEQRES 7 A 428 SER LEU VAL ASP ARG ARG ALA MET ARG PHE HIS GLY ARG SEQRES 8 A 428 GLY THR ALA TRP ASN HIS ILE ALA MET ASP GLN ALA ILE SEQRES 9 A 428 ALA ASP ALA GLY LEU THR GLU GLU GLU VAL SER ASN GLU SEQRES 10 A 428 ARG THR GLY ILE ILE MET GLY SER GLY GLY PRO SER THR SEQRES 11 A 428 ARG THR ILE VAL ASP SER ALA ASP ILE THR ARG GLU LYS SEQRES 12 A 428 GLY PRO LYS ARG VAL GLY PRO PHE ALA VAL PRO LYS ALA SEQRES 13 A 428 MET SER SER THR ALA SER ALA THR LEU ALA THR PHE PHE SEQRES 14 A 428 LYS ILE LYS GLY ILE ASN TYR SER ILE SER SER ALA CYS SEQRES 15 A 428 ALA THR SER ASN HIS CYS ILE GLY ASN ALA TYR GLU MET SEQRES 16 A 428 ILE GLN TYR GLY LYS GLN ASP ARG MET PHE ALA GLY GLY SEQRES 17 A 428 CYS GLU ASP LEU ASP TRP THR LEU SER VAL LEU PHE ASP SEQRES 18 A 428 ALA MET GLY ALA MET SER SER LYS TYR ASN ASP THR PRO SEQRES 19 A 428 SER THR ALA SER ARG ALA TYR ASP LYS ASN ARG ASP GLY SEQRES 20 A 428 PHE VAL ILE ALA GLY GLY ALA GLY VAL LEU VAL LEU GLU SEQRES 21 A 428 ASP LEU GLU THR ALA LEU ALA ARG GLY ALA LYS ILE TYR SEQRES 22 A 428 GLY GLU ILE VAL GLY TYR GLY ALA THR SER ASP GLY TYR SEQRES 23 A 428 ASP MET VAL ALA PRO SER GLY GLU GLY ALA ILE ARG CYS SEQRES 24 A 428 MET LYS MET ALA LEU SER THR VAL THR SER LYS ILE ASP SEQRES 25 A 428 TYR ILE ASN PRO HIS ALA THR SER THR PRO ALA GLY ASP SEQRES 26 A 428 ALA PRO GLU ILE GLU ALA ILE ARG GLN ILE PHE GLY ALA SEQRES 27 A 428 GLY ASP VAL CYS PRO PRO ILE ALA ALA THR LYS SER LEU SEQRES 28 A 428 THR GLY HIS SER LEU GLY ALA THR GLY VAL GLN GLU ALA SEQRES 29 A 428 ILE TYR SER LEU LEU MET MET GLN ASN ASN PHE ILE CYS SEQRES 30 A 428 GLU SER ALA HIS ILE GLU GLU LEU ASP PRO ALA PHE ALA SEQRES 31 A 428 ASP MET PRO ILE VAL ARG LYS ARG ILE ASP ASN VAL GLN SEQRES 32 A 428 LEU ASN THR VAL LEU SER ASN SER PHE GLY PHE GLY GLY SEQRES 33 A 428 THR ASN ALA THR LEU VAL PHE GLN ARG TYR GLN GLY HET NA A 500 1 HET NA A 501 1 HET CL A 502 1 HET 3MQ A 499 24 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM 3MQ (5-THIOPHEN-2-YLISOXAZOL-3-YL)METHANOL FORMUL 2 NA 2(NA 1+) FORMUL 4 CL CL 1- FORMUL 5 3MQ C8 H7 N O2 S FORMUL 6 HOH *454(H2 O) HELIX 1 1 ASN A 18 ALA A 29 1 12 HELIX 2 2 ALA A 36 LEU A 42 1 7 HELIX 3 3 ASP A 55 VAL A 60 1 6 HELIX 4 4 ARG A 62 ARG A 66 5 5 HELIX 5 5 GLY A 69 GLY A 87 1 19 HELIX 6 6 THR A 89 SER A 94 1 6 HELIX 7 7 SER A 108 GLY A 123 1 16 HELIX 8 8 PRO A 124 GLY A 128 5 5 HELIX 9 9 ALA A 131 MET A 136 1 6 HELIX 10 10 SER A 138 PHE A 148 1 11 HELIX 11 11 SER A 159 CYS A 161 5 3 HELIX 12 12 ALA A 162 TYR A 177 1 16 HELIX 13 13 ASP A 192 MET A 202 1 11 HELIX 14 14 THR A 212 ALA A 216 5 5 HELIX 15 15 LEU A 241 ARG A 247 1 7 HELIX 16 16 GLY A 272 SER A 284 1 13 HELIX 17 17 THR A 300 GLY A 316 1 17 HELIX 18 18 ALA A 317 CYS A 321 5 5 HELIX 19 19 THR A 327 GLY A 332 1 6 HELIX 20 20 SER A 334 GLY A 336 5 3 HELIX 21 21 ALA A 337 ASN A 353 1 17 HELIX 22 22 ASP A 365 ALA A 369 5 5 SHEET 1 A 9 ASN A 154 TYR A 155 0 SHEET 2 A 9 THR A 98 SER A 104 1 N ILE A 100 O TYR A 155 SHEET 3 A 9 ARG A 182 GLU A 189 1 O PHE A 184 N GLY A 99 SHEET 4 A 9 GLY A 232 ASP A 240 -1 O LEU A 238 N MET A 183 SHEET 5 A 9 VAL A 4 VAL A 12 -1 N VAL A 5 O GLU A 239 SHEET 6 A 9 GLY A 253 SER A 262 -1 O GLY A 253 N VAL A 6 SHEET 7 A 9 THR A 396 GLN A 403 -1 O GLN A 403 N GLU A 254 SHEET 8 A 9 THR A 385 GLY A 392 -1 N GLY A 392 O THR A 396 SHEET 9 A 9 TYR A 292 ASN A 294 1 N ASN A 294 O LEU A 387 SHEET 1 B 2 ILE A 33 ARG A 35 0 SHEET 2 B 2 VAL A 48 GLY A 50 -1 O HIS A 49 N SER A 34 SHEET 1 C 2 PHE A 354 ILE A 355 0 SHEET 2 C 2 ILE A 378 ASP A 379 -1 O ILE A 378 N ILE A 355 LINK O LEU A 283 NA NA A 501 1555 1555 2.49 LINK O VAL A 286 NA NA A 501 1555 1555 2.64 LINK OD1 ASN A 294 NA NA A 500 1555 1555 2.35 LINK O ASN A 294 NA NA A 500 1555 1555 2.59 LINK O PRO A 295 NA NA A 500 1555 1555 2.85 LINK OE1 GLU A 342 NA NA A 500 1555 1555 2.33 LINK OG ASER A 388 NA NA A 500 1555 1555 2.54 LINK O ASN A 389 NA NA A 500 1555 1555 2.54 LINK O HOH A 478 NA NA A 501 1555 1555 2.29 LINK NA NA A 501 O HOH A 521 1555 1555 2.57 LINK NA NA A 501 O HOH A 795 1555 1555 2.36 SITE 1 AC1 5 ASN A 294 PRO A 295 GLU A 342 SER A 388 SITE 2 AC1 5 ASN A 389 SITE 1 AC2 5 LEU A 283 VAL A 286 HOH A 478 HOH A 521 SITE 2 AC2 5 HOH A 795 SITE 1 AC3 3 MET A 267 HOH A 476 HOH A 864 SITE 1 AC4 12 GLY A 105 GLY A 106 PRO A 107 THR A 109 SITE 2 AC4 12 VAL A 132 ALA A 135 MET A 136 ALA A 160 SITE 3 AC4 12 CYS A 161 LEU A 195 PHE A 199 LEU A 335 CRYST1 78.070 83.620 73.640 90.00 121.37 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012809 0.000000 0.007809 0.00000 SCALE2 0.000000 0.011959 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015904 0.00000