HEADER HYDROLASE 29-APR-10 3MSR TITLE THE CRYSTAL STRUCTURE OF AN AMIDOHYDROLASE FROM MYCOPLASMA SYNOVIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMIDOHYDROLASES; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOPLASMA SYNOVIAE; SOURCE 3 ORGANISM_TAXID: 262723; SOURCE 4 STRAIN: 53; SOURCE 5 GENE: HAD, MS53_0025; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+CODON+RIL (P)-STRATAGENE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3 (BC) KEYWDS AMIDOHYDROLASES, HAD, HYDROLASE, PSI, SGX, STRUCTURAL GENOMICS, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR Z.ZHANG,S.K.BURLEY,S.SWAMINATHAN,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 3 10-FEB-21 3MSR 1 AUTHOR JRNL REMARK LINK REVDAT 2 12-JAN-11 3MSR 1 REMARK REVDAT 1 12-MAY-10 3MSR 0 JRNL AUTH Z.ZHANG,S.K.BURLEY,S.SWAMINATHAN JRNL TITL THE CRYSTAL STRUCTURE OF AN AMIDOHYDROLASE FROM MYCOPLASMA JRNL TITL 2 SYNOVIAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 27521 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1387 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.5942 - 4.6550 1.00 2847 153 0.1663 0.1809 REMARK 3 2 4.6550 - 3.6956 1.00 2689 132 0.1291 0.1769 REMARK 3 3 3.6956 - 3.2286 1.00 2632 146 0.1491 0.1615 REMARK 3 4 3.2286 - 2.9335 1.00 2609 134 0.1630 0.2061 REMARK 3 5 2.9335 - 2.7233 1.00 2585 142 0.1581 0.2101 REMARK 3 6 2.7233 - 2.5628 0.99 2575 150 0.1523 0.2102 REMARK 3 7 2.5628 - 2.4344 0.99 2573 122 0.1456 0.2088 REMARK 3 8 2.4344 - 2.3285 0.99 2553 137 0.1410 0.2177 REMARK 3 9 2.3285 - 2.2388 0.99 2533 143 0.1385 0.1939 REMARK 3 10 2.2388 - 2.1616 0.99 2538 128 0.1344 0.1917 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 39.61 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00180 REMARK 3 B22 (A**2) : 0.00180 REMARK 3 B33 (A**2) : -0.00350 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 2851 REMARK 3 ANGLE : 1.591 3848 REMARK 3 CHIRALITY : 0.112 435 REMARK 3 PLANARITY : 0.008 491 REMARK 3 DIHEDRAL : 19.648 1064 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3MSR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000058950. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27549 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 29.70 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 29.50 REMARK 200 R MERGE FOR SHELL (I) : 0.43900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM SODIUM TARTRATE REMARK 280 TETRAHYDATE, 0.1 M SODIUM CITRATE TRIBASIC DIHYDRATE PH5.6, 2.0 REMARK 280 M AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 69.15400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 69.15400 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.15400 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 69.15400 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 69.15400 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 69.15400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 69070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -134.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 55.62400 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 96.34359 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -55.62400 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 96.34359 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 55.62400 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 96.34359 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 69.15400 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 69.15400 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 -55.62400 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 96.34359 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 69.15400 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 55.62400 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 96.34359 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -55.62400 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 96.34359 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 69.15400 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -1 REMARK 465 SER A 0 REMARK 465 GLU A 354 REMARK 465 GLY A 355 REMARK 465 HIS A 356 REMARK 465 HIS A 357 REMARK 465 HIS A 358 REMARK 465 HIS A 359 REMARK 465 HIS A 360 REMARK 465 HIS A 361 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 24 94.35 -165.12 REMARK 500 PHE A 27 -52.97 -131.93 REMARK 500 HIS A 38 136.44 -174.05 REMARK 500 THR A 97 -165.86 -105.24 REMARK 500 ASP A 238 -157.34 -105.87 REMARK 500 TYR A 245 -64.32 -95.23 REMARK 500 ARG A 299 -50.74 -126.64 REMARK 500 VAL A 319 -62.33 -121.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 362 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 363 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-9686B RELATED DB: TARGETDB DBREF 3MSR A 2 353 UNP Q4A724 Q4A724_MYCS5 2 353 SEQADV 3MSR MSE A -1 UNP Q4A724 EXPRESSION TAG SEQADV 3MSR SER A 0 UNP Q4A724 EXPRESSION TAG SEQADV 3MSR LEU A 1 UNP Q4A724 EXPRESSION TAG SEQADV 3MSR GLU A 354 UNP Q4A724 EXPRESSION TAG SEQADV 3MSR GLY A 355 UNP Q4A724 EXPRESSION TAG SEQADV 3MSR HIS A 356 UNP Q4A724 EXPRESSION TAG SEQADV 3MSR HIS A 357 UNP Q4A724 EXPRESSION TAG SEQADV 3MSR HIS A 358 UNP Q4A724 EXPRESSION TAG SEQADV 3MSR HIS A 359 UNP Q4A724 EXPRESSION TAG SEQADV 3MSR HIS A 360 UNP Q4A724 EXPRESSION TAG SEQADV 3MSR HIS A 361 UNP Q4A724 EXPRESSION TAG SEQRES 1 A 363 MSE SER LEU GLU ASN LYS PHE ALA ARG THR VAL LEU GLY SEQRES 2 A 363 ASP ILE PRO VAL GLU LYS LEU GLY ILE THR ASP CYS HIS SEQRES 3 A 363 ASP HIS PHE ILE LYS ASN GLY GLY PRO GLU VAL GLU GLU SEQRES 4 A 363 HIS ILE ASP PHE LEU MSE LEU ASN VAL ASP ALA SER ILE SEQRES 5 A 363 LYS GLU PHE LYS GLU PHE ILE ASP ARG GLY GLY SER THR SEQRES 6 A 363 ILE VAL THR MSE ASP PRO PRO ASN VAL GLY ARG ASP VAL SEQRES 7 A 363 LEU LYS THR LEU GLU ILE ALA ASN ALA VAL LYS ASN LEU SEQRES 8 A 363 GLY GLY ASN VAL ILE MSE SER THR GLY PHE HIS LYS ALA SEQRES 9 A 363 LYS PHE TYR ASP LYS TYR SER SER TRP LEU ALA VAL VAL SEQRES 10 A 363 PRO THR GLU GLU ILE VAL LYS MSE CYS VAL ALA GLU ILE SEQRES 11 A 363 GLU GLU GLY MSE ASP GLU TYR ASN TYR ASN GLY PRO VAL SEQRES 12 A 363 VAL LYS ARG SER LYS ALA LYS ALA GLY ILE ILE LYS ALA SEQRES 13 A 363 GLY THR GLY TYR GLY ALA ILE ASP ARG LEU GLU LEU LYS SEQRES 14 A 363 ALA LEU GLU VAL ALA ALA ARG THR SER ILE LEU THR GLY SEQRES 15 A 363 CYS PRO ILE LEU VAL HIS THR GLN LEU GLY THR MSE ALA SEQRES 16 A 363 LEU GLU VAL ALA LYS HIS LEU ILE GLY PHE GLY ALA ASN SEQRES 17 A 363 PRO ASP LYS ILE GLN ILE SER HIS LEU ASN LYS ASN PRO SEQRES 18 A 363 ASP LYS TYR TYR TYR GLU LYS VAL ILE LYS GLU THR GLY SEQRES 19 A 363 VAL THR LEU CYS PHE ASP GLY PRO ASP ARG VAL LYS TYR SEQRES 20 A 363 TYR PRO ASP SER LEU LEU ALA GLU ASN ILE LYS TYR LEU SEQRES 21 A 363 VAL ASP LYS GLY LEU GLN LYS HIS ILE THR LEU SER LEU SEQRES 22 A 363 ASP ALA GLY ARG ILE LEU TYR GLN ARG ASN TYR GLY LEU SEQRES 23 A 363 THR LYS GLY LYS GLN THR PHE GLY LEU ALA TYR LEU PHE SEQRES 24 A 363 ASP ARG PHE LEU PRO LEU LEU LYS GLN VAL GLY VAL SER SEQRES 25 A 363 LYS GLU ALA ILE PHE ASP ILE LEU VAL ASN ASN PRO LYS SEQRES 26 A 363 ARG VAL LEU ALA PHE ASP GLU LYS ARG ASN PHE ASP PRO SEQRES 27 A 363 LEU LYS VAL SER LYS GLU VAL LEU GLU LEU LYS LYS GLU SEQRES 28 A 363 LEU ASN LEU ASN GLU GLY HIS HIS HIS HIS HIS HIS MODRES 3MSR MSE A 43 MET SELENOMETHIONINE MODRES 3MSR MSE A 67 MET SELENOMETHIONINE MODRES 3MSR MSE A 95 MET SELENOMETHIONINE MODRES 3MSR MSE A 123 MET SELENOMETHIONINE MODRES 3MSR MSE A 132 MET SELENOMETHIONINE MODRES 3MSR MSE A 192 MET SELENOMETHIONINE HET MSE A 43 8 HET MSE A 67 8 HET MSE A 95 8 HET MSE A 123 8 HET MSE A 132 8 HET MSE A 192 8 HET GOL A 362 6 HET PO4 A 363 5 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 GOL C3 H8 O3 FORMUL 3 PO4 O4 P 3- FORMUL 4 HOH *295(H2 O) HELIX 1 1 GLU A 16 LEU A 18 5 3 HELIX 2 2 GLY A 32 HIS A 38 1 7 HELIX 3 3 ILE A 39 LEU A 42 5 4 HELIX 4 4 ASN A 45 ARG A 59 1 15 HELIX 5 5 ASP A 75 LYS A 87 1 13 HELIX 6 6 ASN A 88 GLY A 90 5 3 HELIX 7 7 LYS A 101 TYR A 105 5 5 HELIX 8 8 SER A 110 VAL A 115 1 6 HELIX 9 9 PRO A 116 GLU A 130 1 15 HELIX 10 10 ASP A 162 GLY A 180 1 19 HELIX 11 11 GLN A 188 THR A 191 5 4 HELIX 12 12 MSE A 192 GLY A 204 1 13 HELIX 13 13 ASN A 206 ASP A 208 5 3 HELIX 14 14 LEU A 215 ASN A 218 5 4 HELIX 15 15 ASP A 220 GLY A 232 1 13 HELIX 16 16 PRO A 247 LYS A 261 1 15 HELIX 17 17 LEU A 263 LYS A 265 5 3 HELIX 18 18 ARG A 275 TYR A 278 5 4 HELIX 19 19 GLN A 279 LYS A 286 1 8 HELIX 20 20 LEU A 293 ARG A 299 1 7 HELIX 21 21 ARG A 299 GLY A 308 1 10 HELIX 22 22 SER A 310 VAL A 319 1 10 HELIX 23 23 VAL A 319 LEU A 326 1 8 HELIX 24 24 ASP A 335 VAL A 339 5 5 HELIX 25 25 SER A 340 LEU A 350 1 11 SHEET 1 A 2 PHE A 5 THR A 8 0 SHEET 2 A 2 GLY A 11 PRO A 14 -1 O ILE A 13 N ALA A 6 SHEET 1 B 8 ILE A 20 ASP A 25 0 SHEET 2 B 8 GLY A 61 THR A 66 1 O VAL A 65 N ASP A 25 SHEET 3 B 8 ASN A 92 GLY A 98 1 O ASN A 92 N SER A 62 SHEET 4 B 8 ILE A 151 GLY A 155 1 O ILE A 151 N THR A 97 SHEET 5 B 8 ILE A 183 HIS A 186 1 O HIS A 186 N ALA A 154 SHEET 6 B 8 ILE A 210 SER A 213 1 O SER A 213 N VAL A 185 SHEET 7 B 8 THR A 234 PHE A 237 1 O THR A 234 N ILE A 210 SHEET 8 B 8 ILE A 267 LEU A 269 1 O THR A 268 N PHE A 237 LINK C LEU A 42 N MSE A 43 1555 1555 1.34 LINK C MSE A 43 N LEU A 44 1555 1555 1.33 LINK C THR A 66 N MSE A 67 1555 1555 1.33 LINK C MSE A 67 N ASP A 68 1555 1555 1.32 LINK C ILE A 94 N MSE A 95 1555 1555 1.33 LINK C MSE A 95 N SER A 96 1555 1555 1.33 LINK C LYS A 122 N MSE A 123 1555 1555 1.33 LINK C MSE A 123 N CYS A 124 1555 1555 1.33 LINK C GLY A 131 N MSE A 132 1555 1555 1.32 LINK C MSE A 132 N ASP A 133 1555 1555 1.32 LINK C THR A 191 N MSE A 192 1555 1555 1.33 LINK C MSE A 192 N ALA A 193 1555 1555 1.32 SITE 1 AC1 10 THR A 191 MSE A 192 ASN A 218 ASP A 241 SITE 2 AC1 10 VAL A 243 TYR A 295 ARG A 299 HOH A 394 SITE 3 AC1 10 HOH A 579 HOH A 639 SITE 1 AC2 8 PHE A 41 LYS A 217 LYS A 244 TYR A 245 SITE 2 AC2 8 ARG A 275 TYR A 278 HOH A 430 HOH A 480 CRYST1 111.248 111.248 138.308 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008989 0.005190 0.000000 0.00000 SCALE2 0.000000 0.010380 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007230 0.00000