HEADER TRANSPORT PROTEIN 29-APR-10 3MST TITLE CRYSTAL STRUCTURE OF A PUTATIVE NITRATE TRANSPORT PROTEIN (TVN0104) TITLE 2 FROM THERMOPLASMA VOLCANIUM AT 1.35 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE NITRATE TRANSPORT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOPLASMA VOLCANIUM; SOURCE 3 ORGANISM_COMMON: ARCHAEA; SOURCE 4 ORGANISM_TAXID: 50339; SOURCE 5 GENE: TV0103, TVG0108190; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3MST 1 REMARK SEQADV REVDAT 4 17-JUL-19 3MST 1 REMARK LINK REVDAT 3 25-OCT-17 3MST 1 REMARK REVDAT 2 13-MAR-13 3MST 1 REMARK VERSN REVDAT 1 09-FEB-11 3MST 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE NITRATE TRANSPORT PROTEIN JRNL TITL 2 (TVN0104) FROM THERMOPLASMA VOLCANIUM AT 1.35 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 49502 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.121 REMARK 3 R VALUE (WORKING SET) : 0.119 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2500 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3286 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 193 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1809 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 273 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.04000 REMARK 3 B22 (A**2) : -0.48000 REMARK 3 B33 (A**2) : -0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.26000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.048 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.031 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.689 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2089 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1435 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2842 ; 1.661 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3522 ; 0.984 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 284 ; 5.771 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;35.163 ;24.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 380 ;12.329 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;14.712 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 307 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2459 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 430 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1314 ; 2.531 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 533 ; 0.920 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2148 ; 3.535 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 775 ; 4.845 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 694 ; 6.852 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3524 ; 1.782 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: (1) HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. (2) A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. (3) UNIDENTIFIED LIGAND (UNL) HAS BEEN MODELED IN REMARK 3 ELECTRON DENSITY FOUND NEAR THE PUTATIVE ACTIVE SITES. (4) REMARK 3 CHLORIDE (CL) AND ACETATE (ACT) IONS FROM CRYSTALLIZATION REMARK 3 CONDITION, AND ETHYLENE GLYCOL (EDO) MOLECULES FROM CRYO REMARK 3 CONDITION ARE MODELED INTO THE STRUCTURE. (5) THE EXPERIMENTAL REMARK 3 PHASE RESTRAINTS INCLUDED IN THE REFINEMENT ARE FROM A THREE- REMARK 3 WAVELENGTH MAD DATA SET COLLECTED FROM THE SECOND CRYSTAL. REMARK 4 REMARK 4 3MST COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000058952. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-10; 11-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 4.33; 4.33 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SSRL; SSRL REMARK 200 BEAMLINE : BL9-2; BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837; 0.97959, 0.91837, REMARK 200 0.97917 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR; REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR; FLAT MIRROR REMARK 200 (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD; MARMOSAIC REMARK 200 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49540 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 41.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.880 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: MAD PHASING WAS ACOMPLISHED WITH 3-WAVELENGTH DATA FROM A REMARK 200 SECOND CRYSTAL THAT DIFFRACTED TO 2.2 A. THE INITIAL MODEL BUILT REMARK 200 FROM THESE PHASES WAS REFINED AGAINST THE CURRENT 1.35 A DATA. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.25M CALCIUM CHLORIDE, 14.0% 2 REMARK 280 -PROPANOL, 0.1M SODIUM ACETATE PH 4.33, TEMPERATURE 277K, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP. 0.25M CALCIUM CHLORIDE, REMARK 280 22.0% 2-PROPANOL, 0.1M SODIUM ACETATE PH 4.33, TEMPERATURE 277K, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.02000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT REMARK 300 SCATTERING SUPPORTS THE ASSIGNMENT OF A MONOMER AS A SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 ASP A -15 REMARK 465 LYS A -14 REMARK 465 ILE A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A -6 CG CD OE1 OE2 REMARK 470 GLN A -1 CD OE1 NE2 REMARK 470 ARG A 148 CZ NH1 NH2 REMARK 470 LYS A 164 CE NZ REMARK 470 GLU A 168 CD OE1 OE2 REMARK 470 ARG A 169 CD NE CZ NH1 NH2 REMARK 470 GLU A 184 CG CD OE1 OE2 REMARK 470 LYS A 188 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 131 CG - SE - CE ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A -5 1.97 -64.65 REMARK 500 ALA A 100 -153.47 -154.39 REMARK 500 SER A 145 -159.28 -162.64 REMARK 500 ASN A 166 57.71 -148.28 REMARK 500 TYR A 180 -40.78 -151.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 232 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 233 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 234 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 235 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 236 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 400673 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. DNA SEQUENCING OF THE CLONED CONSTRUCT REVEALS REMARK 999 A SERINE AT POSITION 8 INSTEAD OF AN ALANINE. THE SERINE AT REMARK 999 POSITION 8 IS SUPPORTED BY ELECTRON DENSITY. DBREF 3MST A 1 225 UNP Q97CJ8 Q97CJ8_THEVO 1 225 SEQADV 3MST MSE A -18 UNP Q97CJ8 EXPRESSION TAG SEQADV 3MST GLY A -17 UNP Q97CJ8 EXPRESSION TAG SEQADV 3MST SER A -16 UNP Q97CJ8 EXPRESSION TAG SEQADV 3MST ASP A -15 UNP Q97CJ8 EXPRESSION TAG SEQADV 3MST LYS A -14 UNP Q97CJ8 EXPRESSION TAG SEQADV 3MST ILE A -13 UNP Q97CJ8 EXPRESSION TAG SEQADV 3MST HIS A -12 UNP Q97CJ8 EXPRESSION TAG SEQADV 3MST HIS A -11 UNP Q97CJ8 EXPRESSION TAG SEQADV 3MST HIS A -10 UNP Q97CJ8 EXPRESSION TAG SEQADV 3MST HIS A -9 UNP Q97CJ8 EXPRESSION TAG SEQADV 3MST HIS A -8 UNP Q97CJ8 EXPRESSION TAG SEQADV 3MST HIS A -7 UNP Q97CJ8 EXPRESSION TAG SEQADV 3MST GLU A -6 UNP Q97CJ8 EXPRESSION TAG SEQADV 3MST ASN A -5 UNP Q97CJ8 EXPRESSION TAG SEQADV 3MST LEU A -4 UNP Q97CJ8 EXPRESSION TAG SEQADV 3MST TYR A -3 UNP Q97CJ8 EXPRESSION TAG SEQADV 3MST PHE A -2 UNP Q97CJ8 EXPRESSION TAG SEQADV 3MST GLN A -1 UNP Q97CJ8 EXPRESSION TAG SEQADV 3MST GLY A 0 UNP Q97CJ8 EXPRESSION TAG SEQADV 3MST SER A 8 UNP Q97CJ8 ALA 8 SEE REMARK 999 SEQRES 1 A 244 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 244 ASN LEU TYR PHE GLN GLY MSE ASP VAL GLY MSE PRO PHE SEQRES 3 A 244 SER GLY PRO VAL SER PHE PRO LEU LEU VAL ILE GLU GLU SEQRES 4 A 244 GLU LEU PRO PHE ARG ILE HIS ASN ILE CYS SER GLU THR SEQRES 5 A 244 GLY LYS PHE ASP VAL VAL LEU ASP SER ILE THR ASN MSE SEQRES 6 A 244 PRO LYS TYR GLY LEU LYS ILE PHE ALA GLY VAL ARG ILE SEQRES 7 A 244 ASP MSE TYR SER ILE LEU GLY ASP GLU SER SER GLY ARG SEQRES 8 A 244 ILE TYR THR LEU ARG LYS GLY THR LEU ALA ASP PHE ASN SEQRES 9 A 244 ALA ARG ILE LEU ALA TYR TYR ASP LYS ALA GLN VAL ILE SEQRES 10 A 244 ASN ALA ASP GLY ASP THR CYS ILE LYS MSE ALA ASN GLU SEQRES 11 A 244 GLY TYR SER ALA LEU VAL GLY ASN GLU ILE SER ILE GLY SEQRES 12 A 244 LYS SER PHE ARG ASN ARG MSE LYS GLU LEU GLY LEU ASP SEQRES 13 A 244 LEU PRO SER CYS ALA MSE ALA SER THR ARG ARG ILE ASP SEQRES 14 A 244 GLU VAL ILE GLU ALA TYR GLU GLN GLY ILE ASP PHE ILE SEQRES 15 A 244 LYS ASN ASN HIS GLU ARG ALA ALA GLU ILE ILE SER LYS SEQRES 16 A 244 LYS SER GLY TYR TYR SER GLU GLU VAL MSE LYS LYS ILE SEQRES 17 A 244 ILE GLY ILE TYR GLY HIS GLU VAL THR LYS LYS ARG ALA SEQRES 18 A 244 GLU LEU VAL GLY SER ARG GLU LEU TYR SER ARG VAL VAL SEQRES 19 A 244 PRO GLU LEU ASN ASP ILE GLU ILE ILE GLY MODRES 3MST MSE A 1 MET SELENOMETHIONINE MODRES 3MST MSE A 5 MET SELENOMETHIONINE MODRES 3MST MSE A 46 MET SELENOMETHIONINE MODRES 3MST MSE A 61 MET SELENOMETHIONINE MODRES 3MST MSE A 108 MET SELENOMETHIONINE MODRES 3MST MSE A 131 MET SELENOMETHIONINE MODRES 3MST MSE A 143 MET SELENOMETHIONINE MODRES 3MST MSE A 186 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 5 8 HET MSE A 46 8 HET MSE A 61 8 HET MSE A 108 16 HET MSE A 131 16 HET MSE A 143 8 HET MSE A 186 8 HET UNL A 226 5 HET CL A 227 1 HET CL A 228 1 HET CL A 229 1 HET CL A 230 1 HET CL A 231 1 HET ACT A 232 4 HET EDO A 233 4 HET EDO A 234 4 HET EDO A 235 4 HET EDO A 236 4 HETNAM MSE SELENOMETHIONINE HETNAM UNL UNKNOWN LIGAND HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 CL 5(CL 1-) FORMUL 8 ACT C2 H3 O2 1- FORMUL 9 EDO 4(C2 H6 O2) FORMUL 13 HOH *273(H2 O) HELIX 1 1 HIS A -7 TYR A -3 5 5 HELIX 2 2 GLY A 9 VAL A 11 5 3 HELIX 3 3 SER A 12 ILE A 18 1 7 HELIX 4 4 GLU A 19 LEU A 22 5 4 HELIX 5 5 THR A 44 TYR A 49 5 6 HELIX 6 6 THR A 80 LYS A 94 1 15 HELIX 7 7 ASP A 101 GLU A 111 1 11 HELIX 8 8 PHE A 127 LEU A 134 1 8 HELIX 9 9 ILE A 149 ASN A 166 1 18 HELIX 10 10 ASN A 166 GLY A 179 1 14 HELIX 11 11 SER A 182 ILE A 190 1 9 HELIX 12 12 GLY A 191 TYR A 193 5 3 HELIX 13 13 LYS A 200 SER A 212 1 13 HELIX 14 14 ARG A 213 VAL A 214 5 2 HELIX 15 15 VAL A 215 ILE A 221 5 7 SHEET 1 A 6 ILE A 26 ASN A 28 0 SHEET 2 A 6 VAL A 3 MSE A 5 1 N MSE A 5 O HIS A 27 SHEET 3 A 6 VAL A 38 SER A 42 1 O VAL A 38 N GLY A 4 SHEET 4 A 6 CYS A 141 SER A 145 -1 O ALA A 142 N ASP A 41 SHEET 5 A 6 LYS A 52 ARG A 58 -1 N LYS A 52 O SER A 145 SHEET 6 A 6 GLU A 196 THR A 198 -1 O GLU A 196 N ARG A 58 SHEET 1 B 5 GLN A 96 ASN A 99 0 SHEET 2 B 5 ARG A 72 THR A 75 1 N ILE A 73 O GLN A 96 SHEET 3 B 5 SER A 114 GLY A 118 1 O SER A 114 N TYR A 74 SHEET 4 B 5 TYR A 62 GLY A 66 -1 N SER A 63 O VAL A 117 SHEET 5 B 5 LYS A 125 SER A 126 -1 O LYS A 125 N ILE A 64 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N ASP A 2 1555 1555 1.35 LINK C GLY A 4 N MSE A 5 1555 1555 1.33 LINK C MSE A 5 N PRO A 6 1555 1555 1.34 LINK C ASN A 45 N MSE A 46 1555 1555 1.31 LINK C MSE A 46 N PRO A 47 1555 1555 1.35 LINK C ASP A 60 N MSE A 61 1555 1555 1.33 LINK C MSE A 61 N TYR A 62 1555 1555 1.34 LINK C LYS A 107 N AMSE A 108 1555 1555 1.33 LINK C LYS A 107 N BMSE A 108 1555 1555 1.33 LINK C AMSE A 108 N ALA A 109 1555 1555 1.34 LINK C BMSE A 108 N ALA A 109 1555 1555 1.33 LINK C ARG A 130 N AMSE A 131 1555 1555 1.33 LINK C ARG A 130 N BMSE A 131 1555 1555 1.33 LINK C AMSE A 131 N LYS A 132 1555 1555 1.32 LINK C BMSE A 131 N LYS A 132 1555 1555 1.34 LINK C ALA A 142 N MSE A 143 1555 1555 1.33 LINK C MSE A 143 N ALA A 144 1555 1555 1.31 LINK C AVAL A 185 N MSE A 186 1555 1555 1.33 LINK C BVAL A 185 N MSE A 186 1555 1555 1.34 LINK C MSE A 186 N LYS A 187 1555 1555 1.33 SITE 1 AC1 5 ARG A 58 ILE A 59 ARG A 128 LEU A 138 SITE 2 AC1 5 SER A 140 SITE 1 AC2 5 ARG A 201 ARG A 208 GLU A 222 ILE A 223 SITE 2 AC2 5 EDO A 236 SITE 1 AC3 5 ARG A 77 LYS A 78 ASN A 99 HOH A 361 SITE 2 AC3 5 HOH A 425 SITE 1 AC4 2 LYS A 199 HOH A 415 SITE 1 AC5 3 LEU A 51 ILE A 221 GLU A 222 SITE 1 AC6 6 PRO A 10 MSE A 61 GLU A 120 HOH A 396 SITE 2 AC6 6 HOH A 398 HOH A 458 SITE 1 AC7 5 GLU A 21 PRO A 23 ALA A 155 GLN A 158 SITE 2 AC7 5 HOH A 355 SITE 1 AC8 6 GLY A 71 ARG A 72 GLN A 96 HOH A 244 SITE 2 AC8 6 HOH A 383 HOH A 390 SITE 1 AC9 3 ALA A 95 GLN A 96 VAL A 97 SITE 1 BC1 6 ASP A 101 GLY A 102 ASP A 103 CL A 228 SITE 2 BC1 6 HOH A 297 HOH A 322 CRYST1 35.042 80.040 42.522 90.00 104.67 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028537 0.000000 0.007473 0.00000 SCALE2 0.000000 0.012494 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024310 0.00000