HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-APR-10 3MT0 TITLE THE CRYSTAL STRUCTURE OF A FUNCTIONALLY UNKNOWN PROTEIN PA1789 FROM TITLE 2 PSEUDOMONAS AERUGINOSA PAO1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN PA1789; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 GENE: PA1789; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,C.CHANG,C.TESAR,J.BEARDEN,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 1 12-MAY-10 3MT0 0 JRNL AUTH K.TAN,C.CHANG,C.TESAR,J.BEARDEN,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A FUNCTIONALLY UNKNOWN PROTEIN JRNL TITL 2 PA1789 FROM PSEUDOMONAS AERUGINOSA PAO1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.070 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 32797 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1661 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.3318 - 3.4067 0.94 3181 169 0.1545 0.1611 REMARK 3 2 3.4067 - 2.7043 0.97 3251 175 0.1784 0.2172 REMARK 3 3 2.7043 - 2.3626 0.97 3239 155 0.1828 0.2341 REMARK 3 4 2.3626 - 2.1466 0.98 3246 177 0.1705 0.1934 REMARK 3 5 2.1466 - 1.9928 0.97 3237 162 0.1714 0.2113 REMARK 3 6 1.9928 - 1.8753 0.97 3180 173 0.1775 0.2104 REMARK 3 7 1.8753 - 1.7814 0.94 3141 158 0.1878 0.2348 REMARK 3 8 1.7814 - 1.7038 0.92 3032 152 0.2029 0.2439 REMARK 3 9 1.7038 - 1.6382 0.88 2895 182 0.2125 0.2339 REMARK 3 10 1.6382 - 1.5817 0.83 2734 158 0.2474 0.2513 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 41.92 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.81400 REMARK 3 B22 (A**2) : 9.29030 REMARK 3 B33 (A**2) : -7.47630 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.72990 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2292 REMARK 3 ANGLE : 0.942 3131 REMARK 3 CHIRALITY : 0.066 371 REMARK 3 PLANARITY : 0.005 408 REMARK 3 DIHEDRAL : 15.156 867 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 9.7683 4.8838 33.3832 REMARK 3 T TENSOR REMARK 3 T11: 0.1269 T22: 0.1047 REMARK 3 T33: 0.1099 T12: 0.0037 REMARK 3 T13: -0.0068 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.3859 L22: 0.3914 REMARK 3 L33: 1.0114 L12: 0.1106 REMARK 3 L13: -0.3252 L23: 0.0533 REMARK 3 S TENSOR REMARK 3 S11: -0.0103 S12: 0.0308 S13: -0.0104 REMARK 3 S21: 0.0499 S22: 0.0121 S23: 0.0032 REMARK 3 S31: 0.0560 S32: -0.0981 S33: 0.0015 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3MT0 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAY-10. REMARK 100 THE RCSB ID CODE IS RCSB058959. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34184 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.46200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD/MLPHARE/DM/ARP/WARP/HKL3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 0.1M TRIS, 20%(V/V) REMARK 280 PEG8000, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.61350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: EXPERIMENTALLY UNKNOWN. IT IS LIKELY THE MOLECULE IS REMARK 300 MONOMERIC. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 177 REMARK 465 PRO A 178 REMARK 465 MSE A 179 REMARK 465 LEU A 180 REMARK 465 SER A 181 REMARK 465 SER A 182 REMARK 465 ALA A 183 REMARK 465 ASP A 184 REMARK 465 PRO A 185 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 72 -59.16 76.54 REMARK 500 PRO A 117 42.16 -90.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 288 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 289 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 290 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC67739.0 RELATED DB: TARGETDB DBREF 3MT0 A 1 287 UNP Q9I2V3 Q9I2V3_PSEAE 1 287 SEQADV 3MT0 SER A -2 UNP Q9I2V3 EXPRESSION TAG SEQADV 3MT0 ASN A -1 UNP Q9I2V3 EXPRESSION TAG SEQADV 3MT0 ALA A 0 UNP Q9I2V3 EXPRESSION TAG SEQRES 1 A 290 SER ASN ALA MSE GLN ALA ILE ARG SER ILE LEU VAL VAL SEQRES 2 A 290 ILE GLU PRO ASP GLN LEU GLU GLY LEU ALA LEU LYS ARG SEQRES 3 A 290 ALA GLN LEU ILE ALA GLY VAL THR GLN SER HIS LEU HIS SEQRES 4 A 290 LEU LEU VAL CYS GLU LYS ARG ARG ASP HIS SER ALA ALA SEQRES 5 A 290 LEU ASN ASP LEU ALA GLN GLU LEU ARG GLU GLU GLY TYR SEQRES 6 A 290 SER VAL SER THR ASN GLN ALA TRP LYS ASP SER LEU HIS SEQRES 7 A 290 GLN THR ILE ILE ALA GLU GLN GLN ALA GLU GLY CYS GLY SEQRES 8 A 290 LEU ILE ILE LYS GLN HIS PHE PRO ASP ASN PRO LEU LYS SEQRES 9 A 290 LYS ALA ILE LEU THR PRO ASP ASP TRP LYS LEU LEU ARG SEQRES 10 A 290 PHE ALA PRO CYS PRO VAL LEU MSE THR LYS THR ALA ARG SEQRES 11 A 290 PRO TRP THR GLY GLY LYS ILE LEU ALA ALA VAL ASP VAL SEQRES 12 A 290 GLY ASN ASN ASP GLY GLU HIS ARG SER LEU HIS ALA GLY SEQRES 13 A 290 ILE ILE SER HIS ALA TYR ASP ILE ALA GLY LEU ALA LYS SEQRES 14 A 290 ALA THR LEU HIS VAL ILE SER ALA HIS PRO SER PRO MSE SEQRES 15 A 290 LEU SER SER ALA ASP PRO THR PHE GLN LEU SER GLU THR SEQRES 16 A 290 ILE GLU ALA ARG TYR ARG GLU ALA CYS ARG THR PHE GLN SEQRES 17 A 290 ALA GLU TYR GLY PHE SER ASP GLU GLN LEU HIS ILE GLU SEQRES 18 A 290 GLU GLY PRO ALA ASP VAL LEU ILE PRO ARG THR ALA GLN SEQRES 19 A 290 LYS LEU ASP ALA VAL VAL THR VAL ILE GLY THR VAL ALA SEQRES 20 A 290 ARG THR GLY LEU SER GLY ALA LEU ILE GLY ASN THR ALA SEQRES 21 A 290 GLU VAL VAL LEU ASP THR LEU GLU SER ASP VAL LEU VAL SEQRES 22 A 290 LEU LYS PRO ASP ASP ILE ILE ALA HIS LEU GLU GLU LEU SEQRES 23 A 290 ALA SER LYS GLU MODRES 3MT0 MSE A 1 MET SELENOMETHIONINE MODRES 3MT0 MSE A 122 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 122 13 HET CL A 288 1 HET CL A 289 1 HET CL A 290 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 CL 3(CL 1-) FORMUL 5 HOH *222(H2 O) HELIX 1 1 GLY A 18 GLN A 32 1 15 HELIX 2 2 HIS A 46 GLU A 60 1 15 HELIX 3 3 SER A 73 GLY A 86 1 14 HELIX 4 4 THR A 106 ALA A 116 1 11 HELIX 5 5 ASP A 144 ALA A 165 1 22 HELIX 6 6 THR A 186 GLY A 209 1 24 HELIX 7 7 PRO A 221 ASP A 234 1 14 HELIX 8 8 GLY A 247 ALA A 251 5 5 HELIX 9 9 GLY A 254 ASP A 262 1 9 HELIX 10 10 PRO A 273 GLU A 287 1 15 SHEET 1 A10 VAL A 64 ALA A 69 0 SHEET 2 A10 HIS A 34 CYS A 40 1 N LEU A 37 O SER A 65 SHEET 3 A10 SER A 6 VAL A 10 1 N VAL A 9 O HIS A 36 SHEET 4 A10 LEU A 89 GLN A 93 1 O LEU A 89 N LEU A 8 SHEET 5 A10 VAL A 120 THR A 123 1 O LEU A 121 N ILE A 90 SHEET 6 A10 ASP A 267 LEU A 271 -1 O VAL A 270 N VAL A 120 SHEET 7 A10 VAL A 237 GLY A 241 1 N ILE A 240 O LEU A 271 SHEET 8 A10 LYS A 133 VAL A 138 1 N LEU A 135 O VAL A 239 SHEET 9 A10 THR A 168 HIS A 175 1 O THR A 168 N ILE A 134 SHEET 10 A10 LEU A 215 GLU A 219 1 O HIS A 216 N VAL A 171 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N GLN A 2 1555 1555 1.33 LINK C LEU A 121 N MSE A 122 1555 1555 1.33 LINK C MSE A 122 N THR A 123 1555 1555 1.33 SITE 1 AC1 3 ARG A 23 TRP A 129 HOH A 341 SITE 1 AC2 6 ARG A 114 ALA A 251 LEU A 252 ILE A 253 SITE 2 AC2 6 HOH A 323 HOH A 357 SITE 1 AC3 3 ARG A 5 GLY A 88 HOH A 364 CRYST1 42.749 67.227 48.446 90.00 110.97 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023392 0.000000 0.008964 0.00000 SCALE2 0.000000 0.014875 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022105 0.00000