data_3MTS # _entry.id 3MTS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3MTS RCSB RCSB058985 WWPDB D_1000058985 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id HR3128 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3MTS _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-04-30 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lam, R.' 1 'Li, Z.' 2 'Wang, J.' 3 'Crombet, L.' 4 'Walker, J.R.' 5 'Ouyang, H.' 6 'Bountra, C.' 7 'Weigelt, J.' 8 'Arrowsmith, C.H.' 9 'Edwards, A.M.' 10 'Bochkarev, A.' 11 'Min, J.' 12 'Structural Genomics Consortium (SGC)' 13 # _citation.id primary _citation.title 'Crystal Structure of the Human SUV39H1 Chromodomain and Its Recognition of Histone H3K9me2/3.' _citation.journal_abbrev 'Plos One' _citation.journal_volume 7 _citation.page_first e52977 _citation.page_last e52977 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23285239 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0052977 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Wang, T.' 1 primary 'Xu, C.' 2 primary 'Liu, Y.' 3 primary 'Fan, K.' 4 primary 'Li, Z.' 5 primary 'Sun, X.' 6 primary 'Ouyang, H.' 7 primary 'Zhang, X.' 8 primary 'Zhang, J.' 9 primary 'Li, Y.' 10 primary 'Mackenzie, F.' 11 primary 'Min, J.' 12 primary 'Tu, X.' 13 # _cell.entry_id 3MTS _cell.length_a 99.528 _cell.length_b 99.528 _cell.length_c 118.321 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 54 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3MTS _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Histone-lysine N-methyltransferase SUV39H1' 8100.261 3 2.1.1.43 ? 'Chromo domain (UNP residues 44:106)' ? 2 water nat water 18.015 32 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Suppressor of variegation 3-9 homolog 1, Su(var)3-9 homolog 1, Position-effect variegation 3-9 homolog, Histone H3-K9 methyltransferase 1, Lysine N-methyltransferase 1A ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GEVEYLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNLKCVRILKQFHKDLERELLRRHHRSKT _entity_poly.pdbx_seq_one_letter_code_can GEVEYLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNLKCVRILKQFHKDLERELLRRHHRSKT _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier HR3128 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLU n 1 3 VAL n 1 4 GLU n 1 5 TYR n 1 6 LEU n 1 7 CYS n 1 8 ASP n 1 9 TYR n 1 10 LYS n 1 11 LYS n 1 12 ILE n 1 13 ARG n 1 14 GLU n 1 15 GLN n 1 16 GLU n 1 17 TYR n 1 18 TYR n 1 19 LEU n 1 20 VAL n 1 21 LYS n 1 22 TRP n 1 23 ARG n 1 24 GLY n 1 25 TYR n 1 26 PRO n 1 27 ASP n 1 28 SER n 1 29 GLU n 1 30 SER n 1 31 THR n 1 32 TRP n 1 33 GLU n 1 34 PRO n 1 35 ARG n 1 36 GLN n 1 37 ASN n 1 38 LEU n 1 39 LYS n 1 40 CYS n 1 41 VAL n 1 42 ARG n 1 43 ILE n 1 44 LEU n 1 45 LYS n 1 46 GLN n 1 47 PHE n 1 48 HIS n 1 49 LYS n 1 50 ASP n 1 51 LEU n 1 52 GLU n 1 53 ARG n 1 54 GLU n 1 55 LEU n 1 56 LEU n 1 57 ARG n 1 58 ARG n 1 59 HIS n 1 60 HIS n 1 61 ARG n 1 62 SER n 1 63 LYS n 1 64 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'KMT1A, SUV39H, SUV39H1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21-(DE3)-V2R-pRARE2' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28-MHL _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SUV91_HUMAN _struct_ref.pdbx_db_accession O43463 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code EVEYLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNLKCVRILKQFHKDLERELLRRHHRSKT _struct_ref.pdbx_align_begin 44 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3MTS A 2 ? 64 ? O43463 44 ? 106 ? 44 106 2 1 3MTS B 2 ? 64 ? O43463 44 ? 106 ? 44 106 3 1 3MTS C 2 ? 64 ? O43463 44 ? 106 ? 44 106 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3MTS GLY A 1 ? UNP O43463 ? ? 'EXPRESSION TAG' 43 1 2 3MTS GLY B 1 ? UNP O43463 ? ? 'EXPRESSION TAG' 43 2 3 3MTS GLY C 1 ? UNP O43463 ? ? 'EXPRESSION TAG' 43 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3MTS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.32 _exptl_crystal.density_percent_sol 46.99 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '3.5M Na Formate, 0.1M Bis-Tris Propane pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2010-03-13 _diffrn_detector.details 'Si(111) Double Crystal Monochrometer' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal cryo-cooled Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97944 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 23-ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 23-ID-B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97944 # _reflns.entry_id 3MTS _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 2.200 _reflns.number_obs 11662 _reflns.number_all ? _reflns.percent_possible_obs 100.000 _reflns.pdbx_Rmerge_I_obs 0.084 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.900 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.300 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.20 2.28 100.00 0.502 ? ? 9.30 ? ? ? ? ? ? 1 1 2.28 2.37 100.00 0.389 ? ? 9.40 ? ? ? ? ? ? 2 1 2.37 2.48 100.00 0.340 ? ? 9.40 ? ? ? ? ? ? 3 1 2.48 2.61 100.00 0.245 ? ? 9.40 ? ? ? ? ? ? 4 1 2.61 2.77 100.00 0.188 ? ? 9.40 ? ? ? ? ? ? 5 1 2.77 2.99 100.00 0.130 ? ? 9.40 ? ? ? ? ? ? 6 1 2.99 3.29 100.00 0.089 ? ? 9.40 ? ? ? ? ? ? 7 1 3.29 3.76 100.00 0.075 ? ? 9.30 ? ? ? ? ? ? 8 1 3.76 4.74 100.00 0.050 ? ? 9.20 ? ? ? ? ? ? 9 1 4.74 50.00 99.70 0.044 ? ? 8.80 ? ? ? ? ? ? 10 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3MTS _refine.ls_number_reflns_obs 11102 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.83 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 99.95 _refine.ls_R_factor_obs 0.21005 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20831 _refine.ls_R_factor_R_free 0.24379 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 555 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 1.00 _refine.occupancy_max 1.00 _refine.correlation_coeff_Fo_to_Fc 0.947 _refine.correlation_coeff_Fo_to_Fc_free 0.927 _refine.B_iso_mean 40.999 _refine.aniso_B[1][1] -0.15 _refine.aniso_B[2][2] -0.15 _refine.aniso_B[3][3] 0.22 _refine.aniso_B[1][2] -0.07 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 1KNA' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.271 _refine.pdbx_overall_ESU_R_Free 0.207 _refine.overall_SU_ML 0.164 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 14.512 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1565 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 32 _refine_hist.number_atoms_total 1597 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 34.83 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.021 ? 1605 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.290 1.952 ? 2159 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.938 5.000 ? 178 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 30.707 22.247 ? 89 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.159 15.000 ? 299 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.708 15.000 ? 19 'X-RAY DIFFRACTION' ? r_chiral_restr 0.086 0.200 ? 214 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.021 ? 1230 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.759 1.500 ? 902 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.457 2.000 ? 1445 'X-RAY DIFFRACTION' ? r_scbond_it 1.951 3.000 ? 703 'X-RAY DIFFRACTION' ? r_scangle_it 3.161 4.500 ? 714 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.200 _refine_ls_shell.d_res_low 2.257 _refine_ls_shell.number_reflns_R_work 813 _refine_ls_shell.R_factor_R_work 0.244 _refine_ls_shell.percent_reflns_obs 99.77 _refine_ls_shell.R_factor_R_free 0.351 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 44 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3MTS _struct.title 'Chromo Domain of Human Histone-Lysine N-Methyltransferase SUV39H1' _struct.pdbx_descriptor 'Histone-lysine N-methyltransferase SUV39H1 (E.C.2.1.1.43)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3MTS _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;histone methyltransferase, histone-lysine N-methyltransferase, SUV39H1, histone H3, tri-methylation, epigenetics, transcriptional repression, transcription regulation, chromatin, chromo domain, pre-SET domain, SET domain, post-SET domain, Structural Genomics Consortium, SGC, TRANSFERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 26 ? SER A 30 ? PRO A 68 SER A 72 5 ? 5 HELX_P HELX_P2 2 GLN A 36 ? LEU A 38 ? GLN A 78 LEU A 80 5 ? 3 HELX_P HELX_P3 3 CYS A 40 ? SER A 62 ? CYS A 82 SER A 104 1 ? 23 HELX_P HELX_P4 4 PRO B 26 ? SER B 30 ? PRO B 68 SER B 72 5 ? 5 HELX_P HELX_P5 5 GLN B 36 ? LEU B 38 ? GLN B 78 LEU B 80 5 ? 3 HELX_P HELX_P6 6 CYS B 40 ? HIS B 59 ? CYS B 82 HIS B 101 1 ? 20 HELX_P HELX_P7 7 PRO C 26 ? SER C 30 ? PRO C 68 SER C 72 5 ? 5 HELX_P HELX_P8 8 GLN C 36 ? LEU C 38 ? GLN C 78 LEU C 80 5 ? 3 HELX_P HELX_P9 9 CYS C 40 ? ARG C 58 ? CYS C 82 ARG C 100 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ILE _struct_mon_prot_cis.label_seq_id 12 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ILE _struct_mon_prot_cis.auth_seq_id 54 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 ARG _struct_mon_prot_cis.pdbx_label_seq_id_2 13 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 ARG _struct_mon_prot_cis.pdbx_auth_seq_id_2 55 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -17.14 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 3 ? LYS A 11 ? VAL A 45 LYS A 53 A 2 GLU A 16 ? TRP A 22 ? GLU A 58 TRP A 64 A 3 THR A 31 ? PRO A 34 ? THR A 73 PRO A 76 B 1 VAL B 3 ? ILE B 12 ? VAL B 45 ILE B 54 B 2 GLN B 15 ? TRP B 22 ? GLN B 57 TRP B 64 B 3 THR B 31 ? PRO B 34 ? THR B 73 PRO B 76 C 1 VAL C 3 ? ILE C 12 ? VAL C 45 ILE C 54 C 2 GLN C 15 ? TRP C 22 ? GLN C 57 TRP C 64 C 3 THR C 31 ? PRO C 34 ? THR C 73 PRO C 76 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 10 ? N LYS A 52 O TYR A 17 ? O TYR A 59 A 2 3 N VAL A 20 ? N VAL A 62 O THR A 31 ? O THR A 73 B 1 2 N LYS B 10 ? N LYS B 52 O TYR B 17 ? O TYR B 59 B 2 3 N TYR B 18 ? N TYR B 60 O GLU B 33 ? O GLU B 75 C 1 2 N LYS C 10 ? N LYS C 52 O TYR C 17 ? O TYR C 59 C 2 3 N VAL C 20 ? N VAL C 62 O THR C 31 ? O THR C 73 # _atom_sites.entry_id 3MTS _atom_sites.fract_transf_matrix[1][1] 0.010047 _atom_sites.fract_transf_matrix[1][2] 0.005801 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011602 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008452 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 43 43 GLY GLY A . n A 1 2 GLU 2 44 44 GLU GLU A . n A 1 3 VAL 3 45 45 VAL VAL A . n A 1 4 GLU 4 46 46 GLU GLU A . n A 1 5 TYR 5 47 47 TYR TYR A . n A 1 6 LEU 6 48 48 LEU LEU A . n A 1 7 CYS 7 49 49 CYS CYS A . n A 1 8 ASP 8 50 50 ASP ASP A . n A 1 9 TYR 9 51 51 TYR TYR A . n A 1 10 LYS 10 52 52 LYS LYS A . n A 1 11 LYS 11 53 53 LYS LYS A . n A 1 12 ILE 12 54 54 ILE ILE A . n A 1 13 ARG 13 55 55 ARG ARG A . n A 1 14 GLU 14 56 56 GLU GLU A . n A 1 15 GLN 15 57 57 GLN GLN A . n A 1 16 GLU 16 58 58 GLU GLU A . n A 1 17 TYR 17 59 59 TYR TYR A . n A 1 18 TYR 18 60 60 TYR TYR A . n A 1 19 LEU 19 61 61 LEU LEU A . n A 1 20 VAL 20 62 62 VAL VAL A . n A 1 21 LYS 21 63 63 LYS LYS A . n A 1 22 TRP 22 64 64 TRP TRP A . n A 1 23 ARG 23 65 65 ARG ARG A . n A 1 24 GLY 24 66 66 GLY GLY A . n A 1 25 TYR 25 67 67 TYR TYR A . n A 1 26 PRO 26 68 68 PRO PRO A . n A 1 27 ASP 27 69 69 ASP ASP A . n A 1 28 SER 28 70 70 SER SER A . n A 1 29 GLU 29 71 71 GLU GLU A . n A 1 30 SER 30 72 72 SER SER A . n A 1 31 THR 31 73 73 THR THR A . n A 1 32 TRP 32 74 74 TRP TRP A . n A 1 33 GLU 33 75 75 GLU GLU A . n A 1 34 PRO 34 76 76 PRO PRO A . n A 1 35 ARG 35 77 77 ARG ARG A . n A 1 36 GLN 36 78 78 GLN GLN A . n A 1 37 ASN 37 79 79 ASN ASN A . n A 1 38 LEU 38 80 80 LEU LEU A . n A 1 39 LYS 39 81 81 LYS LYS A . n A 1 40 CYS 40 82 82 CYS CYS A . n A 1 41 VAL 41 83 83 VAL VAL A . n A 1 42 ARG 42 84 84 ARG ARG A . n A 1 43 ILE 43 85 85 ILE ILE A . n A 1 44 LEU 44 86 86 LEU LEU A . n A 1 45 LYS 45 87 87 LYS LYS A . n A 1 46 GLN 46 88 88 GLN GLN A . n A 1 47 PHE 47 89 89 PHE PHE A . n A 1 48 HIS 48 90 90 HIS HIS A . n A 1 49 LYS 49 91 91 LYS LYS A . n A 1 50 ASP 50 92 92 ASP ASP A . n A 1 51 LEU 51 93 93 LEU LEU A . n A 1 52 GLU 52 94 94 GLU GLU A . n A 1 53 ARG 53 95 95 ARG ARG A . n A 1 54 GLU 54 96 96 GLU GLU A . n A 1 55 LEU 55 97 97 LEU LEU A . n A 1 56 LEU 56 98 98 LEU LEU A . n A 1 57 ARG 57 99 99 ARG ARG A . n A 1 58 ARG 58 100 100 ARG ARG A . n A 1 59 HIS 59 101 101 HIS HIS A . n A 1 60 HIS 60 102 102 HIS HIS A . n A 1 61 ARG 61 103 103 ARG ARG A . n A 1 62 SER 62 104 104 SER SER A . n A 1 63 LYS 63 105 ? ? ? A . n A 1 64 THR 64 106 ? ? ? A . n B 1 1 GLY 1 43 43 GLY GLY B . n B 1 2 GLU 2 44 44 GLU GLU B . n B 1 3 VAL 3 45 45 VAL VAL B . n B 1 4 GLU 4 46 46 GLU GLU B . n B 1 5 TYR 5 47 47 TYR TYR B . n B 1 6 LEU 6 48 48 LEU LEU B . n B 1 7 CYS 7 49 49 CYS CYS B . n B 1 8 ASP 8 50 50 ASP ASP B . n B 1 9 TYR 9 51 51 TYR TYR B . n B 1 10 LYS 10 52 52 LYS LYS B . n B 1 11 LYS 11 53 53 LYS LYS B . n B 1 12 ILE 12 54 54 ILE ILE B . n B 1 13 ARG 13 55 55 ARG ARG B . n B 1 14 GLU 14 56 56 GLU GLU B . n B 1 15 GLN 15 57 57 GLN GLN B . n B 1 16 GLU 16 58 58 GLU GLU B . n B 1 17 TYR 17 59 59 TYR TYR B . n B 1 18 TYR 18 60 60 TYR TYR B . n B 1 19 LEU 19 61 61 LEU LEU B . n B 1 20 VAL 20 62 62 VAL VAL B . n B 1 21 LYS 21 63 63 LYS LYS B . n B 1 22 TRP 22 64 64 TRP TRP B . n B 1 23 ARG 23 65 65 ARG ARG B . n B 1 24 GLY 24 66 66 GLY GLY B . n B 1 25 TYR 25 67 67 TYR TYR B . n B 1 26 PRO 26 68 68 PRO PRO B . n B 1 27 ASP 27 69 69 ASP ASP B . n B 1 28 SER 28 70 70 SER SER B . n B 1 29 GLU 29 71 71 GLU GLU B . n B 1 30 SER 30 72 72 SER SER B . n B 1 31 THR 31 73 73 THR THR B . n B 1 32 TRP 32 74 74 TRP TRP B . n B 1 33 GLU 33 75 75 GLU GLU B . n B 1 34 PRO 34 76 76 PRO PRO B . n B 1 35 ARG 35 77 77 ARG ARG B . n B 1 36 GLN 36 78 78 GLN GLN B . n B 1 37 ASN 37 79 79 ASN ASN B . n B 1 38 LEU 38 80 80 LEU LEU B . n B 1 39 LYS 39 81 81 LYS LYS B . n B 1 40 CYS 40 82 82 CYS CYS B . n B 1 41 VAL 41 83 83 VAL VAL B . n B 1 42 ARG 42 84 84 ARG ARG B . n B 1 43 ILE 43 85 85 ILE ILE B . n B 1 44 LEU 44 86 86 LEU LEU B . n B 1 45 LYS 45 87 87 LYS LYS B . n B 1 46 GLN 46 88 88 GLN GLN B . n B 1 47 PHE 47 89 89 PHE PHE B . n B 1 48 HIS 48 90 90 HIS HIS B . n B 1 49 LYS 49 91 91 LYS LYS B . n B 1 50 ASP 50 92 92 ASP ASP B . n B 1 51 LEU 51 93 93 LEU LEU B . n B 1 52 GLU 52 94 94 GLU GLU B . n B 1 53 ARG 53 95 95 ARG ARG B . n B 1 54 GLU 54 96 96 GLU GLU B . n B 1 55 LEU 55 97 97 LEU LEU B . n B 1 56 LEU 56 98 98 LEU LEU B . n B 1 57 ARG 57 99 99 ARG ARG B . n B 1 58 ARG 58 100 100 ARG ARG B . n B 1 59 HIS 59 101 101 HIS HIS B . n B 1 60 HIS 60 102 102 HIS HIS B . n B 1 61 ARG 61 103 103 ARG ARG B . n B 1 62 SER 62 104 ? ? ? B . n B 1 63 LYS 63 105 ? ? ? B . n B 1 64 THR 64 106 ? ? ? B . n C 1 1 GLY 1 43 43 GLY GLY C . n C 1 2 GLU 2 44 44 GLU GLU C . n C 1 3 VAL 3 45 45 VAL VAL C . n C 1 4 GLU 4 46 46 GLU GLU C . n C 1 5 TYR 5 47 47 TYR TYR C . n C 1 6 LEU 6 48 48 LEU LEU C . n C 1 7 CYS 7 49 49 CYS CYS C . n C 1 8 ASP 8 50 50 ASP ASP C . n C 1 9 TYR 9 51 51 TYR TYR C . n C 1 10 LYS 10 52 52 LYS LYS C . n C 1 11 LYS 11 53 53 LYS LYS C . n C 1 12 ILE 12 54 54 ILE ILE C . n C 1 13 ARG 13 55 55 ARG ARG C . n C 1 14 GLU 14 56 56 GLU GLU C . n C 1 15 GLN 15 57 57 GLN GLN C . n C 1 16 GLU 16 58 58 GLU GLU C . n C 1 17 TYR 17 59 59 TYR TYR C . n C 1 18 TYR 18 60 60 TYR TYR C . n C 1 19 LEU 19 61 61 LEU LEU C . n C 1 20 VAL 20 62 62 VAL VAL C . n C 1 21 LYS 21 63 63 LYS LYS C . n C 1 22 TRP 22 64 64 TRP TRP C . n C 1 23 ARG 23 65 65 ARG ARG C . n C 1 24 GLY 24 66 66 GLY GLY C . n C 1 25 TYR 25 67 67 TYR TYR C . n C 1 26 PRO 26 68 68 PRO PRO C . n C 1 27 ASP 27 69 69 ASP ASP C . n C 1 28 SER 28 70 70 SER SER C . n C 1 29 GLU 29 71 71 GLU GLU C . n C 1 30 SER 30 72 72 SER SER C . n C 1 31 THR 31 73 73 THR THR C . n C 1 32 TRP 32 74 74 TRP TRP C . n C 1 33 GLU 33 75 75 GLU GLU C . n C 1 34 PRO 34 76 76 PRO PRO C . n C 1 35 ARG 35 77 77 ARG ARG C . n C 1 36 GLN 36 78 78 GLN GLN C . n C 1 37 ASN 37 79 79 ASN ASN C . n C 1 38 LEU 38 80 80 LEU LEU C . n C 1 39 LYS 39 81 81 LYS LYS C . n C 1 40 CYS 40 82 82 CYS CYS C . n C 1 41 VAL 41 83 83 VAL VAL C . n C 1 42 ARG 42 84 84 ARG ARG C . n C 1 43 ILE 43 85 85 ILE ILE C . n C 1 44 LEU 44 86 86 LEU LEU C . n C 1 45 LYS 45 87 87 LYS LYS C . n C 1 46 GLN 46 88 88 GLN GLN C . n C 1 47 PHE 47 89 89 PHE PHE C . n C 1 48 HIS 48 90 90 HIS HIS C . n C 1 49 LYS 49 91 91 LYS LYS C . n C 1 50 ASP 50 92 92 ASP ASP C . n C 1 51 LEU 51 93 93 LEU LEU C . n C 1 52 GLU 52 94 94 GLU GLU C . n C 1 53 ARG 53 95 95 ARG ARG C . n C 1 54 GLU 54 96 96 GLU GLU C . n C 1 55 LEU 55 97 97 LEU LEU C . n C 1 56 LEU 56 98 98 LEU LEU C . n C 1 57 ARG 57 99 99 ARG ARG C . n C 1 58 ARG 58 100 100 ARG ARG C . n C 1 59 HIS 59 101 ? ? ? C . n C 1 60 HIS 60 102 ? ? ? C . n C 1 61 ARG 61 103 ? ? ? C . n C 1 62 SER 62 104 ? ? ? C . n C 1 63 LYS 63 105 ? ? ? C . n C 1 64 THR 64 106 ? ? ? C . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HOH 1 2 2 HOH HOH A . D 2 HOH 2 5 5 HOH HOH A . D 2 HOH 3 7 7 HOH HOH A . D 2 HOH 4 9 9 HOH HOH A . D 2 HOH 5 10 10 HOH HOH A . D 2 HOH 6 11 11 HOH HOH A . D 2 HOH 7 18 18 HOH HOH A . D 2 HOH 8 19 19 HOH HOH A . D 2 HOH 9 20 20 HOH HOH A . D 2 HOH 10 21 21 HOH HOH A . D 2 HOH 11 23 23 HOH HOH A . D 2 HOH 12 29 29 HOH HOH A . E 2 HOH 1 4 4 HOH HOH B . E 2 HOH 2 14 14 HOH HOH B . E 2 HOH 3 22 22 HOH HOH B . E 2 HOH 4 25 25 HOH HOH B . E 2 HOH 5 30 30 HOH HOH B . F 2 HOH 1 1 1 HOH HOH C . F 2 HOH 2 3 3 HOH HOH C . F 2 HOH 3 6 6 HOH HOH C . F 2 HOH 4 8 8 HOH HOH C . F 2 HOH 5 12 12 HOH HOH C . F 2 HOH 6 13 13 HOH HOH C . F 2 HOH 7 15 15 HOH HOH C . F 2 HOH 8 16 16 HOH HOH C . F 2 HOH 9 17 17 HOH HOH C . F 2 HOH 10 24 24 HOH HOH C . F 2 HOH 11 26 26 HOH HOH C . F 2 HOH 12 27 27 HOH HOH C . F 2 HOH 13 28 28 HOH HOH C . F 2 HOH 14 31 31 HOH HOH C . F 2 HOH 15 32 32 HOH HOH C . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 3 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D 2 1 B,E 3 1 C,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-06-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2013-01-23 4 'Structure model' 1 3 2013-01-30 5 'Structure model' 1 4 2015-01-28 6 'Structure model' 1 5 2017-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 5 'Structure model' Other 5 6 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 6 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -6.3260 20.5380 41.1100 0.2246 0.0984 0.0711 0.0151 0.0292 -0.0178 3.7911 1.6316 7.1368 1.1972 -3.5272 -2.8607 -0.1828 -0.1320 -0.3008 -0.1537 -0.0123 -0.0246 0.4401 0.1321 0.1951 'X-RAY DIFFRACTION' 2 ? refined 3.3710 26.9190 17.6030 0.0675 0.1102 0.1310 0.0028 0.0225 -0.0155 2.5505 4.9705 2.9150 -0.3339 0.1611 -1.6375 -0.1209 0.1234 0.1528 -0.0948 0.0703 -0.3903 -0.0628 0.2197 0.0506 'X-RAY DIFFRACTION' 3 ? refined -6.8930 13.0270 16.8140 0.1979 0.1292 0.0971 0.0126 -0.0185 0.0195 3.8281 3.8954 0.0988 1.0329 -0.4196 0.2662 -0.1711 -0.1120 0.1779 -0.1566 0.1531 0.3426 0.0553 0.0263 0.0180 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 43 ? ? A 104 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 43 ? ? B 103 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 C 43 ? ? C 100 ? ? ? ? # _pdbx_phasing_MR.entry_id 3MTS _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 34.830 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 34.830 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER 2.2.3 'Fri Jan 29 09:54:24 2010' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 REFMAC refmac_5.5.0109 24/04/2001 program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.100 'Jan. 22, 2010' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 Locally 'modified Blu-Ice GUI interface to EPICS control' ? ? ? ? 'data collection' ? ? ? 7 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 8 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG B 55 ? ? 58.03 -115.03 2 1 HIS B 101 ? ? -50.53 -5.87 3 1 ARG C 55 ? ? 56.44 -123.49 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 55 ? CG ? A ARG 13 CG 2 1 Y 1 A ARG 55 ? CD ? A ARG 13 CD 3 1 Y 1 A ARG 55 ? NE ? A ARG 13 NE 4 1 Y 1 A ARG 55 ? CZ ? A ARG 13 CZ 5 1 Y 1 A ARG 55 ? NH1 ? A ARG 13 NH1 6 1 Y 1 A ARG 55 ? NH2 ? A ARG 13 NH2 7 1 Y 1 A GLU 56 ? CG ? A GLU 14 CG 8 1 Y 1 A GLU 56 ? CD ? A GLU 14 CD 9 1 Y 1 A GLU 56 ? OE1 ? A GLU 14 OE1 10 1 Y 1 A GLU 56 ? OE2 ? A GLU 14 OE2 11 1 Y 1 A ASP 69 ? CG ? A ASP 27 CG 12 1 Y 1 A ASP 69 ? OD1 ? A ASP 27 OD1 13 1 Y 1 A ASP 69 ? OD2 ? A ASP 27 OD2 14 1 Y 1 A GLU 96 ? CG ? A GLU 54 CG 15 1 Y 1 A GLU 96 ? CD ? A GLU 54 CD 16 1 Y 1 A GLU 96 ? OE1 ? A GLU 54 OE1 17 1 Y 1 A GLU 96 ? OE2 ? A GLU 54 OE2 18 1 Y 1 A ARG 100 ? CG ? A ARG 58 CG 19 1 Y 1 A ARG 100 ? CD ? A ARG 58 CD 20 1 Y 1 A ARG 100 ? NE ? A ARG 58 NE 21 1 Y 1 A ARG 100 ? CZ ? A ARG 58 CZ 22 1 Y 1 A ARG 100 ? NH1 ? A ARG 58 NH1 23 1 Y 1 A ARG 100 ? NH2 ? A ARG 58 NH2 24 1 Y 1 A ARG 103 ? CG ? A ARG 61 CG 25 1 Y 1 A ARG 103 ? CD ? A ARG 61 CD 26 1 Y 1 A ARG 103 ? NE ? A ARG 61 NE 27 1 Y 1 A ARG 103 ? CZ ? A ARG 61 CZ 28 1 Y 1 A ARG 103 ? NH1 ? A ARG 61 NH1 29 1 Y 1 A ARG 103 ? NH2 ? A ARG 61 NH2 30 1 Y 1 B LYS 52 ? CG ? B LYS 10 CG 31 1 Y 1 B LYS 52 ? CD ? B LYS 10 CD 32 1 Y 1 B LYS 52 ? CE ? B LYS 10 CE 33 1 Y 1 B LYS 52 ? NZ ? B LYS 10 NZ 34 1 Y 1 B GLU 56 ? CG ? B GLU 14 CG 35 1 Y 1 B GLU 56 ? CD ? B GLU 14 CD 36 1 Y 1 B GLU 56 ? OE1 ? B GLU 14 OE1 37 1 Y 1 B GLU 56 ? OE2 ? B GLU 14 OE2 38 1 Y 1 B ASP 69 ? CG ? B ASP 27 CG 39 1 Y 1 B ASP 69 ? OD1 ? B ASP 27 OD1 40 1 Y 1 B ASP 69 ? OD2 ? B ASP 27 OD2 41 1 Y 1 B ARG 103 ? CG ? B ARG 61 CG 42 1 Y 1 B ARG 103 ? CD ? B ARG 61 CD 43 1 Y 1 B ARG 103 ? NE ? B ARG 61 NE 44 1 Y 1 B ARG 103 ? CZ ? B ARG 61 CZ 45 1 Y 1 B ARG 103 ? NH1 ? B ARG 61 NH1 46 1 Y 1 B ARG 103 ? NH2 ? B ARG 61 NH2 47 1 Y 1 C GLU 71 ? CG ? C GLU 29 CG 48 1 Y 1 C GLU 71 ? CD ? C GLU 29 CD 49 1 Y 1 C GLU 71 ? OE1 ? C GLU 29 OE1 50 1 Y 1 C GLU 71 ? OE2 ? C GLU 29 OE2 51 1 Y 1 C LYS 81 ? CG ? C LYS 39 CG 52 1 Y 1 C LYS 81 ? CD ? C LYS 39 CD 53 1 Y 1 C LYS 81 ? CE ? C LYS 39 CE 54 1 Y 1 C LYS 81 ? NZ ? C LYS 39 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 105 ? A LYS 63 2 1 Y 1 A THR 106 ? A THR 64 3 1 Y 1 B SER 104 ? B SER 62 4 1 Y 1 B LYS 105 ? B LYS 63 5 1 Y 1 B THR 106 ? B THR 64 6 1 Y 1 C HIS 101 ? C HIS 59 7 1 Y 1 C HIS 102 ? C HIS 60 8 1 Y 1 C ARG 103 ? C ARG 61 9 1 Y 1 C SER 104 ? C SER 62 10 1 Y 1 C LYS 105 ? C LYS 63 11 1 Y 1 C THR 106 ? C THR 64 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #