data_3MUH # _entry.id 3MUH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3MUH pdb_00003muh 10.2210/pdb3muh/pdb RCSB RCSB059008 ? ? WWPDB D_1000059008 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3MUG _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3MUH _pdbx_database_status.recvd_initial_deposition_date 2010-05-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pejchal, R.' 1 'Walker, L.M.' 2 'Burton, D.R.' 3 'Wilson, I.A.' 4 # _citation.id primary _citation.title 'Structure and function of broadly reactive antibody PG16 reveal an H3 subdomain that mediates potent neutralization of HIV-1.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 107 _citation.page_first 11483 _citation.page_last 11488 _citation.year 2010 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20534513 _citation.pdbx_database_id_DOI 10.1073/pnas.1004600107 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pejchal, R.' 1 ? primary 'Walker, L.M.' 2 ? primary 'Stanfield, R.L.' 3 ? primary 'Phogat, S.K.' 4 ? primary 'Koff, W.C.' 5 ? primary 'Poignard, P.' 6 ? primary 'Burton, D.R.' 7 ? primary 'Wilson, I.A.' 8 ? # _cell.entry_id 3MUH _cell.length_a 87.430 _cell.length_b 87.430 _cell.length_c 198.460 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3MUH _symmetry.space_group_name_H-M 'P 62 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Antibody PG9 light chain' 22823.229 1 ? ? ? ? 2 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ? 3 water nat water 18.015 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;QSALTQPASVSGSPGQSITISCNGTSNDVGGYESVSWYQQHPGKAPKVVIYDVSKRPSGVSNRFSGSKSGNTASLTISGL QAEDEGDYYCKSLTSTRRRVFGTGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVK AGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTECS ; _entity_poly.pdbx_seq_one_letter_code_can ;QSALTQPASVSGSPGQSITISCNGTSNDVGGYESVSWYQQHPGKAPKVVIYDVSKRPSGVSNRFSGSKSGNTASLTISGL QAEDEGDYYCKSLTSTRRRVFGTGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVK AGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTECS ; _entity_poly.pdbx_strand_id L _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 SER n 1 3 ALA n 1 4 LEU n 1 5 THR n 1 6 GLN n 1 7 PRO n 1 8 ALA n 1 9 SER n 1 10 VAL n 1 11 SER n 1 12 GLY n 1 13 SER n 1 14 PRO n 1 15 GLY n 1 16 GLN n 1 17 SER n 1 18 ILE n 1 19 THR n 1 20 ILE n 1 21 SER n 1 22 CYS n 1 23 ASN n 1 24 GLY n 1 25 THR n 1 26 SER n 1 27 ASN n 1 28 ASP n 1 29 VAL n 1 30 GLY n 1 31 GLY n 1 32 TYR n 1 33 GLU n 1 34 SER n 1 35 VAL n 1 36 SER n 1 37 TRP n 1 38 TYR n 1 39 GLN n 1 40 GLN n 1 41 HIS n 1 42 PRO n 1 43 GLY n 1 44 LYS n 1 45 ALA n 1 46 PRO n 1 47 LYS n 1 48 VAL n 1 49 VAL n 1 50 ILE n 1 51 TYR n 1 52 ASP n 1 53 VAL n 1 54 SER n 1 55 LYS n 1 56 ARG n 1 57 PRO n 1 58 SER n 1 59 GLY n 1 60 VAL n 1 61 SER n 1 62 ASN n 1 63 ARG n 1 64 PHE n 1 65 SER n 1 66 GLY n 1 67 SER n 1 68 LYS n 1 69 SER n 1 70 GLY n 1 71 ASN n 1 72 THR n 1 73 ALA n 1 74 SER n 1 75 LEU n 1 76 THR n 1 77 ILE n 1 78 SER n 1 79 GLY n 1 80 LEU n 1 81 GLN n 1 82 ALA n 1 83 GLU n 1 84 ASP n 1 85 GLU n 1 86 GLY n 1 87 ASP n 1 88 TYR n 1 89 TYR n 1 90 CYS n 1 91 LYS n 1 92 SER n 1 93 LEU n 1 94 THR n 1 95 SER n 1 96 THR n 1 97 ARG n 1 98 ARG n 1 99 ARG n 1 100 VAL n 1 101 PHE n 1 102 GLY n 1 103 THR n 1 104 GLY n 1 105 THR n 1 106 LYS n 1 107 LEU n 1 108 THR n 1 109 VAL n 1 110 LEU n 1 111 GLY n 1 112 GLN n 1 113 PRO n 1 114 LYS n 1 115 ALA n 1 116 ALA n 1 117 PRO n 1 118 SER n 1 119 VAL n 1 120 THR n 1 121 LEU n 1 122 PHE n 1 123 PRO n 1 124 PRO n 1 125 SER n 1 126 SER n 1 127 GLU n 1 128 GLU n 1 129 LEU n 1 130 GLN n 1 131 ALA n 1 132 ASN n 1 133 LYS n 1 134 ALA n 1 135 THR n 1 136 LEU n 1 137 VAL n 1 138 CYS n 1 139 LEU n 1 140 ILE n 1 141 SER n 1 142 ASP n 1 143 PHE n 1 144 TYR n 1 145 PRO n 1 146 GLY n 1 147 ALA n 1 148 VAL n 1 149 THR n 1 150 VAL n 1 151 ALA n 1 152 TRP n 1 153 LYS n 1 154 ALA n 1 155 ASP n 1 156 SER n 1 157 SER n 1 158 PRO n 1 159 VAL n 1 160 LYS n 1 161 ALA n 1 162 GLY n 1 163 VAL n 1 164 GLU n 1 165 THR n 1 166 THR n 1 167 THR n 1 168 PRO n 1 169 SER n 1 170 LYS n 1 171 GLN n 1 172 SER n 1 173 ASN n 1 174 ASN n 1 175 LYS n 1 176 TYR n 1 177 ALA n 1 178 ALA n 1 179 SER n 1 180 SER n 1 181 TYR n 1 182 LEU n 1 183 SER n 1 184 LEU n 1 185 THR n 1 186 PRO n 1 187 GLU n 1 188 GLN n 1 189 TRP n 1 190 LYS n 1 191 SER n 1 192 HIS n 1 193 LYS n 1 194 SER n 1 195 TYR n 1 196 SER n 1 197 CYS n 1 198 GLN n 1 199 VAL n 1 200 THR n 1 201 HIS n 1 202 GLU n 1 203 GLY n 1 204 SER n 1 205 THR n 1 206 VAL n 1 207 GLU n 1 208 LYS n 1 209 THR n 1 210 VAL n 1 211 ALA n 1 212 PRO n 1 213 THR n 1 214 GLU n 1 215 CYS n 1 216 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line 'HEK 293S GnTI -/-' _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3MUH _struct_ref.pdbx_db_accession 3MUH _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ;QSALTQPASVSGSPGQSITISCNGTSNDVGGYESVSWYQQHPGKAPKVVIYDVSKRPSGVSNRFSGSKSGNTASLTISGL QAEDEGDYYCKSLTSTRRRVFGTGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVK AGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTECS ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3MUH _struct_ref_seq.pdbx_strand_id L _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 216 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3MUH _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 215 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 215 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3MUH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.80 _exptl_crystal.density_percent_sol 74.36 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '40% ethanol, 0.05M magnesium chloride, 0.1M Tris, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.pdbx_collection_date 2009-11-13 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'single crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9795 # _reflns.entry_id 3MUH _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.99 _reflns.number_obs 9135 _reflns.number_all 9778 _reflns.percent_possible_obs 93.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.094 _reflns.pdbx_netI_over_sigmaI 21.8 _reflns.B_iso_Wilson_estimate 99.14 _reflns.pdbx_redundancy 13.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.99 _reflns_shell.d_res_low 3.06 _reflns_shell.percent_possible_all 96.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.690 _reflns_shell.meanI_over_sigI_obs 3.68 _reflns_shell.pdbx_redundancy 11.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 672 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3MUH _refine.ls_number_reflns_obs 8978 _refine.ls_number_reflns_all 8978 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.00 _refine.ls_d_res_high 3.00 _refine.ls_percent_reflns_obs 93.4 _refine.ls_R_factor_obs 0.2480 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2454 _refine.ls_R_factor_R_free 0.2773 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.15 _refine.ls_number_reflns_R_free 732 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.9001 _refine.correlation_coeff_Fo_to_Fc_free 0.8764 _refine.B_iso_mean 81.95 _refine.aniso_B[1][1] 0.6204 _refine.aniso_B[2][2] 0.6204 _refine.aniso_B[3][3] -1.2408 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1LGV' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3MUH _refine_analyze.Luzzati_coordinate_error_obs 0.750 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1563 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 1593 _refine_hist.d_res_high 3.00 _refine_hist.d_res_low 28.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.010 ? 2.00 1630 'X-RAY DIFFRACTION' ? t_angle_deg 1.34 ? 2.00 2227 'X-RAY DIFFRACTION' ? t_dihedral_angle_d ? ? 2.00 520 'X-RAY DIFFRACTION' ? t_trig_c_planes ? ? 2.00 33 'X-RAY DIFFRACTION' ? t_gen_planes ? ? 5.00 241 'X-RAY DIFFRACTION' ? t_it ? ? 20.00 1630 'X-RAY DIFFRACTION' ? t_omega_torsion 3.15 ? ? ? 'X-RAY DIFFRACTION' ? t_other_torsion 21.77 ? ? ? 'X-RAY DIFFRACTION' ? t_chiral_improper_torsion ? ? 5.00 230 'X-RAY DIFFRACTION' ? t_ideal_dist_contact ? ? 4.00 1710 'X-RAY DIFFRACTION' ? # _struct.entry_id 3MUH _struct.title 'Crystal structure of PG9 light chain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3MUH _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'PG9, HIV, immune system' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 81 ? GLU A 85 ? GLN L 79 GLU L 83 5 ? 5 HELX_P HELX_P2 2 SER A 125 ? ALA A 131 ? SER L 121 ALA L 127 1 ? 7 HELX_P HELX_P3 3 THR A 185 ? HIS A 192 ? THR L 182 HIS L 189 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 90 SG ? ? L CYS 23 L CYS 88 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf2 disulf ? ? A CYS 138 SG ? ? ? 1_555 A CYS 197 SG ? ? L CYS 134 L CYS 194 1_555 ? ? ? ? ? ? ? 2.043 ? ? covale1 covale one ? A ASN 23 ND2 ? ? ? 1_555 B NAG . C1 ? ? L ASN 24 A NAG 1 1_555 ? ? ? ? ? ? ? 1.447 ? N-Glycosylation covale2 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? A NAG 1 A NAG 2 1_555 ? ? ? ? ? ? ? 1.438 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TYR _struct_mon_prot_cis.label_seq_id 144 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TYR _struct_mon_prot_cis.auth_seq_id 140 _struct_mon_prot_cis.auth_asym_id L _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 145 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 141 _struct_mon_prot_cis.pdbx_auth_asym_id_2 L _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -2.13 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 4 ? C ? 3 ? D ? 4 ? E ? 4 ? F ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 9 ? GLY A 12 ? SER L 9 GLY L 13 A 2 THR A 105 ? VAL A 109 ? THR L 102 VAL L 106 A 3 GLY A 86 ? LEU A 93 ? GLY L 84 LEU L 91 A 4 SER A 36 ? GLN A 40 ? SER L 34 GLN L 38 A 5 LYS A 47 ? ILE A 50 ? LYS L 45 ILE L 48 B 1 SER A 9 ? GLY A 12 ? SER L 9 GLY L 13 B 2 THR A 105 ? VAL A 109 ? THR L 102 VAL L 106 B 3 GLY A 86 ? LEU A 93 ? GLY L 84 LEU L 91 B 4 ARG A 99 ? PHE A 101 ? ARG L 96 PHE L 98 C 1 ILE A 18 ? ASN A 23 ? ILE L 19 ASN L 24 C 2 THR A 72 ? ILE A 77 ? THR L 70 ILE L 75 C 3 PHE A 64 ? SER A 69 ? PHE L 62 SER L 67 D 1 SER A 118 ? PHE A 122 ? SER L 114 PHE L 118 D 2 ALA A 134 ? PHE A 143 ? ALA L 130 PHE L 139 D 3 TYR A 176 ? LEU A 184 ? TYR L 173 LEU L 181 D 4 VAL A 163 ? THR A 165 ? VAL L 159 THR L 161 E 1 SER A 118 ? PHE A 122 ? SER L 114 PHE L 118 E 2 ALA A 134 ? PHE A 143 ? ALA L 130 PHE L 139 E 3 TYR A 176 ? LEU A 184 ? TYR L 173 LEU L 181 E 4 SER A 169 ? LYS A 170 ? SER L 165 LYS L 166 F 1 SER A 157 ? VAL A 159 ? SER L 153 VAL L 155 F 2 TRP A 152 ? ALA A 154 ? TRP L 148 ALA L 150 F 3 TYR A 195 ? HIS A 201 ? TYR L 192 HIS L 198 F 4 SER A 204 ? VAL A 210 ? SER L 203 VAL L 209 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 12 ? N GLY L 13 O THR A 108 ? O THR L 105 A 2 3 O THR A 105 ? O THR L 102 N TYR A 88 ? N TYR L 86 A 3 4 O LYS A 91 ? O LYS L 89 N SER A 36 ? N SER L 34 A 4 5 N TRP A 37 ? N TRP L 35 O ILE A 50 ? O ILE L 48 B 1 2 N GLY A 12 ? N GLY L 13 O THR A 108 ? O THR L 105 B 2 3 O THR A 105 ? O THR L 102 N TYR A 88 ? N TYR L 86 B 3 4 N SER A 92 ? N SER L 90 O VAL A 100 ? O VAL L 97 C 1 2 N CYS A 22 ? N CYS L 23 O ALA A 73 ? O ALA L 71 C 2 3 O SER A 74 ? O SER L 72 N SER A 67 ? N SER L 65 D 1 2 N PHE A 122 ? N PHE L 118 O VAL A 137 ? O VAL L 133 D 2 3 N PHE A 143 ? N PHE L 139 O TYR A 176 ? O TYR L 173 D 3 4 O TYR A 181 ? O TYR L 178 N GLU A 164 ? N GLU L 160 E 1 2 N PHE A 122 ? N PHE L 118 O VAL A 137 ? O VAL L 133 E 2 3 N PHE A 143 ? N PHE L 139 O TYR A 176 ? O TYR L 173 E 3 4 O ALA A 177 ? O ALA L 174 N SER A 169 ? N SER L 165 F 1 2 O SER A 157 ? O SER L 153 N ALA A 154 ? N ALA L 150 F 2 3 N LYS A 153 ? N LYS L 149 O SER A 196 ? O SER L 193 F 3 4 N HIS A 201 ? N HIS L 198 O SER A 204 ? O SER L 203 # _database_PDB_matrix.entry_id 3MUH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3MUH _atom_sites.fract_transf_matrix[1][1] 0.011438 _atom_sites.fract_transf_matrix[1][2] 0.006604 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013207 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005039 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 1 ? ? ? L . n A 1 2 SER 2 2 2 SER SER L . n A 1 3 ALA 3 3 3 ALA ALA L . n A 1 4 LEU 4 4 4 LEU LEU L . n A 1 5 THR 5 5 5 THR THR L . n A 1 6 GLN 6 6 6 GLN GLN L . n A 1 7 PRO 7 7 7 PRO PRO L . n A 1 8 ALA 8 8 8 ALA ALA L . n A 1 9 SER 9 9 9 SER SER L . n A 1 10 VAL 10 11 11 VAL VAL L . n A 1 11 SER 11 12 12 SER SER L . n A 1 12 GLY 12 13 13 GLY GLY L . n A 1 13 SER 13 14 14 SER SER L . n A 1 14 PRO 14 15 15 PRO PRO L . n A 1 15 GLY 15 16 16 GLY GLY L . n A 1 16 GLN 16 17 17 GLN GLN L . n A 1 17 SER 17 18 18 SER SER L . n A 1 18 ILE 18 19 19 ILE ILE L . n A 1 19 THR 19 20 20 THR THR L . n A 1 20 ILE 20 21 21 ILE ILE L . n A 1 21 SER 21 22 22 SER SER L . n A 1 22 CYS 22 23 23 CYS CYS L . n A 1 23 ASN 23 24 24 ASN ASN L . n A 1 24 GLY 24 25 25 GLY GLY L . n A 1 25 THR 25 26 26 THR THR L . n A 1 26 SER 26 27 27 SER SER L . n A 1 27 ASN 27 27 27 ASN ASN L A n A 1 28 ASP 28 27 27 ASP ASP L B n A 1 29 VAL 29 27 27 VAL VAL L C n A 1 30 GLY 30 28 28 GLY GLY L . n A 1 31 GLY 31 29 29 GLY GLY L . n A 1 32 TYR 32 30 30 TYR TYR L . n A 1 33 GLU 33 31 31 GLU GLU L . n A 1 34 SER 34 32 32 SER SER L . n A 1 35 VAL 35 33 33 VAL VAL L . n A 1 36 SER 36 34 34 SER SER L . n A 1 37 TRP 37 35 35 TRP TRP L . n A 1 38 TYR 38 36 36 TYR TYR L . n A 1 39 GLN 39 37 37 GLN GLN L . n A 1 40 GLN 40 38 38 GLN GLN L . n A 1 41 HIS 41 39 39 HIS HIS L . n A 1 42 PRO 42 40 40 PRO PRO L . n A 1 43 GLY 43 41 41 GLY GLY L . n A 1 44 LYS 44 42 42 LYS LYS L . n A 1 45 ALA 45 43 43 ALA ALA L . n A 1 46 PRO 46 44 44 PRO PRO L . n A 1 47 LYS 47 45 45 LYS LYS L . n A 1 48 VAL 48 46 46 VAL VAL L . n A 1 49 VAL 49 47 47 VAL VAL L . n A 1 50 ILE 50 48 48 ILE ILE L . n A 1 51 TYR 51 49 49 TYR TYR L . n A 1 52 ASP 52 50 50 ASP ASP L . n A 1 53 VAL 53 51 51 VAL VAL L . n A 1 54 SER 54 52 52 SER SER L . n A 1 55 LYS 55 53 53 LYS LYS L . n A 1 56 ARG 56 54 54 ARG ARG L . n A 1 57 PRO 57 55 55 PRO PRO L . n A 1 58 SER 58 56 56 SER SER L . n A 1 59 GLY 59 57 57 GLY GLY L . n A 1 60 VAL 60 58 58 VAL VAL L . n A 1 61 SER 61 59 59 SER SER L . n A 1 62 ASN 62 60 60 ASN ASN L . n A 1 63 ARG 63 61 61 ARG ARG L . n A 1 64 PHE 64 62 62 PHE PHE L . n A 1 65 SER 65 63 63 SER SER L . n A 1 66 GLY 66 64 64 GLY GLY L . n A 1 67 SER 67 65 65 SER SER L . n A 1 68 LYS 68 66 66 LYS LYS L . n A 1 69 SER 69 67 67 SER SER L . n A 1 70 GLY 70 68 68 GLY GLY L . n A 1 71 ASN 71 69 69 ASN ASN L . n A 1 72 THR 72 70 70 THR THR L . n A 1 73 ALA 73 71 71 ALA ALA L . n A 1 74 SER 74 72 72 SER SER L . n A 1 75 LEU 75 73 73 LEU LEU L . n A 1 76 THR 76 74 74 THR THR L . n A 1 77 ILE 77 75 75 ILE ILE L . n A 1 78 SER 78 76 76 SER SER L . n A 1 79 GLY 79 77 77 GLY GLY L . n A 1 80 LEU 80 78 78 LEU LEU L . n A 1 81 GLN 81 79 79 GLN GLN L . n A 1 82 ALA 82 80 80 ALA ALA L . n A 1 83 GLU 83 81 81 GLU GLU L . n A 1 84 ASP 84 82 82 ASP ASP L . n A 1 85 GLU 85 83 83 GLU GLU L . n A 1 86 GLY 86 84 84 GLY GLY L . n A 1 87 ASP 87 85 85 ASP ASP L . n A 1 88 TYR 88 86 86 TYR TYR L . n A 1 89 TYR 89 87 87 TYR TYR L . n A 1 90 CYS 90 88 88 CYS CYS L . n A 1 91 LYS 91 89 89 LYS LYS L . n A 1 92 SER 92 90 90 SER SER L . n A 1 93 LEU 93 91 91 LEU LEU L . n A 1 94 THR 94 92 92 THR THR L . n A 1 95 SER 95 93 93 SER SER L . n A 1 96 THR 96 94 94 THR THR L . n A 1 97 ARG 97 95 95 ARG ARG L . n A 1 98 ARG 98 95 95 ARG ARG L A n A 1 99 ARG 99 96 96 ARG ARG L . n A 1 100 VAL 100 97 97 VAL VAL L . n A 1 101 PHE 101 98 98 PHE PHE L . n A 1 102 GLY 102 99 99 GLY GLY L . n A 1 103 THR 103 100 100 THR THR L . n A 1 104 GLY 104 101 101 GLY GLY L . n A 1 105 THR 105 102 102 THR THR L . n A 1 106 LYS 106 103 103 LYS LYS L . n A 1 107 LEU 107 104 104 LEU LEU L . n A 1 108 THR 108 105 105 THR THR L . n A 1 109 VAL 109 106 106 VAL VAL L . n A 1 110 LEU 110 106 106 LEU LEU L A n A 1 111 GLY 111 107 107 GLY GLY L . n A 1 112 GLN 112 108 108 GLN GLN L . n A 1 113 PRO 113 109 109 PRO PRO L . n A 1 114 LYS 114 110 110 LYS LYS L . n A 1 115 ALA 115 111 111 ALA ALA L . n A 1 116 ALA 116 112 112 ALA ALA L . n A 1 117 PRO 117 113 113 PRO PRO L . n A 1 118 SER 118 114 114 SER SER L . n A 1 119 VAL 119 115 115 VAL VAL L . n A 1 120 THR 120 116 116 THR THR L . n A 1 121 LEU 121 117 117 LEU LEU L . n A 1 122 PHE 122 118 118 PHE PHE L . n A 1 123 PRO 123 119 119 PRO PRO L . n A 1 124 PRO 124 120 120 PRO PRO L . n A 1 125 SER 125 121 121 SER SER L . n A 1 126 SER 126 122 122 SER SER L . n A 1 127 GLU 127 123 123 GLU GLU L . n A 1 128 GLU 128 124 124 GLU GLU L . n A 1 129 LEU 129 125 125 LEU LEU L . n A 1 130 GLN 130 126 126 GLN GLN L . n A 1 131 ALA 131 127 127 ALA ALA L . n A 1 132 ASN 132 128 128 ASN ASN L . n A 1 133 LYS 133 129 129 LYS LYS L . n A 1 134 ALA 134 130 130 ALA ALA L . n A 1 135 THR 135 131 131 THR THR L . n A 1 136 LEU 136 132 132 LEU LEU L . n A 1 137 VAL 137 133 133 VAL VAL L . n A 1 138 CYS 138 134 134 CYS CYS L . n A 1 139 LEU 139 135 135 LEU LEU L . n A 1 140 ILE 140 136 136 ILE ILE L . n A 1 141 SER 141 137 137 SER SER L . n A 1 142 ASP 142 138 138 ASP ASP L . n A 1 143 PHE 143 139 139 PHE PHE L . n A 1 144 TYR 144 140 140 TYR TYR L . n A 1 145 PRO 145 141 141 PRO PRO L . n A 1 146 GLY 146 142 142 GLY GLY L . n A 1 147 ALA 147 143 143 ALA ALA L . n A 1 148 VAL 148 144 144 VAL VAL L . n A 1 149 THR 149 145 145 THR THR L . n A 1 150 VAL 150 146 146 VAL VAL L . n A 1 151 ALA 151 147 147 ALA ALA L . n A 1 152 TRP 152 148 148 TRP TRP L . n A 1 153 LYS 153 149 149 LYS LYS L . n A 1 154 ALA 154 150 150 ALA ALA L . n A 1 155 ASP 155 151 151 ASP ASP L . n A 1 156 SER 156 152 152 SER SER L . n A 1 157 SER 157 153 153 SER SER L . n A 1 158 PRO 158 154 154 PRO PRO L . n A 1 159 VAL 159 155 155 VAL VAL L . n A 1 160 LYS 160 156 156 LYS LYS L . n A 1 161 ALA 161 157 157 ALA ALA L . n A 1 162 GLY 162 158 158 GLY GLY L . n A 1 163 VAL 163 159 159 VAL VAL L . n A 1 164 GLU 164 160 160 GLU GLU L . n A 1 165 THR 165 161 161 THR THR L . n A 1 166 THR 166 162 162 THR THR L . n A 1 167 THR 167 163 163 THR THR L . n A 1 168 PRO 168 164 164 PRO PRO L . n A 1 169 SER 169 165 165 SER SER L . n A 1 170 LYS 170 166 166 LYS LYS L . n A 1 171 GLN 171 167 167 GLN GLN L . n A 1 172 SER 172 168 168 SER SER L . n A 1 173 ASN 173 170 170 ASN ASN L . n A 1 174 ASN 174 171 171 ASN ASN L . n A 1 175 LYS 175 172 172 LYS LYS L . n A 1 176 TYR 176 173 173 TYR TYR L . n A 1 177 ALA 177 174 174 ALA ALA L . n A 1 178 ALA 178 175 175 ALA ALA L . n A 1 179 SER 179 176 176 SER SER L . n A 1 180 SER 180 177 177 SER SER L . n A 1 181 TYR 181 178 178 TYR TYR L . n A 1 182 LEU 182 179 179 LEU LEU L . n A 1 183 SER 183 180 180 SER SER L . n A 1 184 LEU 184 181 181 LEU LEU L . n A 1 185 THR 185 182 182 THR THR L . n A 1 186 PRO 186 183 183 PRO PRO L . n A 1 187 GLU 187 184 184 GLU GLU L . n A 1 188 GLN 188 185 185 GLN GLN L . n A 1 189 TRP 189 186 186 TRP TRP L . n A 1 190 LYS 190 187 187 LYS LYS L . n A 1 191 SER 191 188 188 SER SER L . n A 1 192 HIS 192 189 189 HIS HIS L . n A 1 193 LYS 193 190 190 LYS LYS L . n A 1 194 SER 194 191 191 SER SER L . n A 1 195 TYR 195 192 192 TYR TYR L . n A 1 196 SER 196 193 193 SER SER L . n A 1 197 CYS 197 194 194 CYS CYS L . n A 1 198 GLN 198 195 195 GLN GLN L . n A 1 199 VAL 199 196 196 VAL VAL L . n A 1 200 THR 200 197 197 THR THR L . n A 1 201 HIS 201 198 198 HIS HIS L . n A 1 202 GLU 202 199 199 GLU GLU L . n A 1 203 GLY 203 200 200 GLY GLY L . n A 1 204 SER 204 203 203 SER SER L . n A 1 205 THR 205 204 204 THR THR L . n A 1 206 VAL 206 205 205 VAL VAL L . n A 1 207 GLU 207 206 206 GLU GLU L . n A 1 208 LYS 208 207 207 LYS LYS L . n A 1 209 THR 209 208 208 THR THR L . n A 1 210 VAL 210 209 209 VAL VAL L . n A 1 211 ALA 211 210 210 ALA ALA L . n A 1 212 PRO 212 211 211 PRO PRO L . n A 1 213 THR 213 212 212 THR THR L . n A 1 214 GLU 214 213 ? ? ? L . n A 1 215 CYS 215 214 ? ? ? L . n A 1 216 SER 216 215 ? ? ? L . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 216 1 HOH HOH L . C 3 HOH 2 217 2 HOH HOH L . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 23 _pdbx_struct_mod_residue.auth_asym_id L _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 24 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-06-16 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 2 1 2021-03-31 6 'Structure model' 2 2 2023-09-06 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' 7 5 'Structure model' 'Source and taxonomy' 8 5 'Structure model' 'Structure summary' 9 6 'Structure model' 'Data collection' 10 6 'Structure model' 'Database references' 11 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' atom_site 3 4 'Structure model' atom_site_anisotrop 4 4 'Structure model' chem_comp 5 4 'Structure model' entity 6 4 'Structure model' pdbx_branch_scheme 7 4 'Structure model' pdbx_chem_comp_identifier 8 4 'Structure model' pdbx_entity_branch 9 4 'Structure model' pdbx_entity_branch_descriptor 10 4 'Structure model' pdbx_entity_branch_link 11 4 'Structure model' pdbx_entity_branch_list 12 4 'Structure model' pdbx_entity_nonpoly 13 4 'Structure model' pdbx_nonpoly_scheme 14 4 'Structure model' pdbx_struct_assembly_gen 15 4 'Structure model' struct_asym 16 4 'Structure model' struct_conn 17 4 'Structure model' struct_site 18 4 'Structure model' struct_site_gen 19 5 'Structure model' chem_comp 20 5 'Structure model' entity_src_gen 21 6 'Structure model' chem_comp_atom 22 6 'Structure model' chem_comp_bond 23 6 'Structure model' database_2 24 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_atom_site.auth_asym_id' 3 4 'Structure model' '_atom_site.auth_seq_id' 4 4 'Structure model' '_atom_site.label_asym_id' 5 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_asym_id' 6 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id' 7 4 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id' 8 4 'Structure model' '_chem_comp.name' 9 4 'Structure model' '_chem_comp.type' 10 4 'Structure model' '_entity.formula_weight' 11 4 'Structure model' '_entity.pdbx_description' 12 4 'Structure model' '_entity.pdbx_number_of_molecules' 13 4 'Structure model' '_entity.type' 14 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 15 4 'Structure model' '_struct_conn.pdbx_dist_value' 16 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 17 4 'Structure model' '_struct_conn.pdbx_role' 18 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 19 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 20 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 26 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 28 5 'Structure model' '_chem_comp.pdbx_synonyms' 29 5 'Structure model' '_entity_src_gen.pdbx_host_org_cell_line' 30 5 'Structure model' '_entity_src_gen.pdbx_host_org_strain' 31 6 'Structure model' '_database_2.pdbx_DOI' 32 6 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 0.0000 0.0000 0.0000 0.0141 0.0050 -0.1321 -0.0091 -0.0477 -0.0271 0.1784 -0.0001 2.7774 -0.0007 0.7627 -0.0486 0.0191 -0.0033 -0.0157 -0.0819 -0.0187 0.0677 0.0842 -0.0240 0.0102 'X-RAY DIFFRACTION' 2 ? refined 0.0000 0.0000 0.0000 -0.0044 -0.0071 -0.1464 -0.0066 -0.0805 -0.0645 0.1901 0.1221 1.5126 0.1372 0.5414 0.2728 -0.0076 0.0471 -0.0395 -0.0175 -0.0127 0.0930 0.0242 -0.0231 -0.0178 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 L 2 L 112 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 2 1 L 502 L 503 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 3 2 L 113 L 213 ? ? ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345 'data collection' . ? 1 PHASER phasing . ? 2 BUSTER refinement 2.8.0 ? 3 XDS 'data reduction' . ? 4 XSCALE 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP L 27 B ? -137.50 -92.09 2 1 GLU L 31 ? ? -96.94 39.36 3 1 PRO L 40 ? ? -34.41 -70.10 4 1 VAL L 51 ? ? 82.35 -55.98 5 1 THR L 94 ? ? -101.99 -143.69 6 1 GLN L 108 ? ? 24.11 68.58 7 1 ASN L 128 ? ? 73.62 31.86 8 1 ASP L 151 ? ? 71.72 -92.48 9 1 SER L 188 ? ? -61.00 -71.95 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 L SER 2 ? OG ? A SER 2 OG 2 1 Y 1 L LYS 103 ? CG ? A LYS 106 CG 3 1 Y 1 L LYS 103 ? CD ? A LYS 106 CD 4 1 Y 1 L LYS 103 ? CE ? A LYS 106 CE 5 1 Y 1 L LYS 103 ? NZ ? A LYS 106 NZ 6 1 Y 1 L GLU 160 ? CG ? A GLU 164 CG 7 1 Y 1 L GLU 160 ? CD ? A GLU 164 CD 8 1 Y 1 L GLU 160 ? OE1 ? A GLU 164 OE1 9 1 Y 1 L GLU 160 ? OE2 ? A GLU 164 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 L GLN 1 ? A GLN 1 2 1 Y 1 L GLU 213 ? A GLU 214 3 1 Y 1 L CYS 214 ? A CYS 215 4 1 Y 1 L SER 215 ? A SER 216 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 NAG C1 C N R 230 NAG C2 C N R 231 NAG C3 C N R 232 NAG C4 C N S 233 NAG C5 C N R 234 NAG C6 C N N 235 NAG C7 C N N 236 NAG C8 C N N 237 NAG N2 N N N 238 NAG O1 O N N 239 NAG O3 O N N 240 NAG O4 O N N 241 NAG O5 O N N 242 NAG O6 O N N 243 NAG O7 O N N 244 NAG H1 H N N 245 NAG H2 H N N 246 NAG H3 H N N 247 NAG H4 H N N 248 NAG H5 H N N 249 NAG H61 H N N 250 NAG H62 H N N 251 NAG H81 H N N 252 NAG H82 H N N 253 NAG H83 H N N 254 NAG HN2 H N N 255 NAG HO1 H N N 256 NAG HO3 H N N 257 NAG HO4 H N N 258 NAG HO6 H N N 259 PHE N N N N 260 PHE CA C N S 261 PHE C C N N 262 PHE O O N N 263 PHE CB C N N 264 PHE CG C Y N 265 PHE CD1 C Y N 266 PHE CD2 C Y N 267 PHE CE1 C Y N 268 PHE CE2 C Y N 269 PHE CZ C Y N 270 PHE OXT O N N 271 PHE H H N N 272 PHE H2 H N N 273 PHE HA H N N 274 PHE HB2 H N N 275 PHE HB3 H N N 276 PHE HD1 H N N 277 PHE HD2 H N N 278 PHE HE1 H N N 279 PHE HE2 H N N 280 PHE HZ H N N 281 PHE HXT H N N 282 PRO N N N N 283 PRO CA C N S 284 PRO C C N N 285 PRO O O N N 286 PRO CB C N N 287 PRO CG C N N 288 PRO CD C N N 289 PRO OXT O N N 290 PRO H H N N 291 PRO HA H N N 292 PRO HB2 H N N 293 PRO HB3 H N N 294 PRO HG2 H N N 295 PRO HG3 H N N 296 PRO HD2 H N N 297 PRO HD3 H N N 298 PRO HXT H N N 299 SER N N N N 300 SER CA C N S 301 SER C C N N 302 SER O O N N 303 SER CB C N N 304 SER OG O N N 305 SER OXT O N N 306 SER H H N N 307 SER H2 H N N 308 SER HA H N N 309 SER HB2 H N N 310 SER HB3 H N N 311 SER HG H N N 312 SER HXT H N N 313 THR N N N N 314 THR CA C N S 315 THR C C N N 316 THR O O N N 317 THR CB C N R 318 THR OG1 O N N 319 THR CG2 C N N 320 THR OXT O N N 321 THR H H N N 322 THR H2 H N N 323 THR HA H N N 324 THR HB H N N 325 THR HG1 H N N 326 THR HG21 H N N 327 THR HG22 H N N 328 THR HG23 H N N 329 THR HXT H N N 330 TRP N N N N 331 TRP CA C N S 332 TRP C C N N 333 TRP O O N N 334 TRP CB C N N 335 TRP CG C Y N 336 TRP CD1 C Y N 337 TRP CD2 C Y N 338 TRP NE1 N Y N 339 TRP CE2 C Y N 340 TRP CE3 C Y N 341 TRP CZ2 C Y N 342 TRP CZ3 C Y N 343 TRP CH2 C Y N 344 TRP OXT O N N 345 TRP H H N N 346 TRP H2 H N N 347 TRP HA H N N 348 TRP HB2 H N N 349 TRP HB3 H N N 350 TRP HD1 H N N 351 TRP HE1 H N N 352 TRP HE3 H N N 353 TRP HZ2 H N N 354 TRP HZ3 H N N 355 TRP HH2 H N N 356 TRP HXT H N N 357 TYR N N N N 358 TYR CA C N S 359 TYR C C N N 360 TYR O O N N 361 TYR CB C N N 362 TYR CG C Y N 363 TYR CD1 C Y N 364 TYR CD2 C Y N 365 TYR CE1 C Y N 366 TYR CE2 C Y N 367 TYR CZ C Y N 368 TYR OH O N N 369 TYR OXT O N N 370 TYR H H N N 371 TYR H2 H N N 372 TYR HA H N N 373 TYR HB2 H N N 374 TYR HB3 H N N 375 TYR HD1 H N N 376 TYR HD2 H N N 377 TYR HE1 H N N 378 TYR HE2 H N N 379 TYR HH H N N 380 TYR HXT H N N 381 VAL N N N N 382 VAL CA C N S 383 VAL C C N N 384 VAL O O N N 385 VAL CB C N N 386 VAL CG1 C N N 387 VAL CG2 C N N 388 VAL OXT O N N 389 VAL H H N N 390 VAL H2 H N N 391 VAL HA H N N 392 VAL HB H N N 393 VAL HG11 H N N 394 VAL HG12 H N N 395 VAL HG13 H N N 396 VAL HG21 H N N 397 VAL HG22 H N N 398 VAL HG23 H N N 399 VAL HXT H N N 400 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 NAG C1 C2 sing N N 218 NAG C1 O1 sing N N 219 NAG C1 O5 sing N N 220 NAG C1 H1 sing N N 221 NAG C2 C3 sing N N 222 NAG C2 N2 sing N N 223 NAG C2 H2 sing N N 224 NAG C3 C4 sing N N 225 NAG C3 O3 sing N N 226 NAG C3 H3 sing N N 227 NAG C4 C5 sing N N 228 NAG C4 O4 sing N N 229 NAG C4 H4 sing N N 230 NAG C5 C6 sing N N 231 NAG C5 O5 sing N N 232 NAG C5 H5 sing N N 233 NAG C6 O6 sing N N 234 NAG C6 H61 sing N N 235 NAG C6 H62 sing N N 236 NAG C7 C8 sing N N 237 NAG C7 N2 sing N N 238 NAG C7 O7 doub N N 239 NAG C8 H81 sing N N 240 NAG C8 H82 sing N N 241 NAG C8 H83 sing N N 242 NAG N2 HN2 sing N N 243 NAG O1 HO1 sing N N 244 NAG O3 HO3 sing N N 245 NAG O4 HO4 sing N N 246 NAG O6 HO6 sing N N 247 PHE N CA sing N N 248 PHE N H sing N N 249 PHE N H2 sing N N 250 PHE CA C sing N N 251 PHE CA CB sing N N 252 PHE CA HA sing N N 253 PHE C O doub N N 254 PHE C OXT sing N N 255 PHE CB CG sing N N 256 PHE CB HB2 sing N N 257 PHE CB HB3 sing N N 258 PHE CG CD1 doub Y N 259 PHE CG CD2 sing Y N 260 PHE CD1 CE1 sing Y N 261 PHE CD1 HD1 sing N N 262 PHE CD2 CE2 doub Y N 263 PHE CD2 HD2 sing N N 264 PHE CE1 CZ doub Y N 265 PHE CE1 HE1 sing N N 266 PHE CE2 CZ sing Y N 267 PHE CE2 HE2 sing N N 268 PHE CZ HZ sing N N 269 PHE OXT HXT sing N N 270 PRO N CA sing N N 271 PRO N CD sing N N 272 PRO N H sing N N 273 PRO CA C sing N N 274 PRO CA CB sing N N 275 PRO CA HA sing N N 276 PRO C O doub N N 277 PRO C OXT sing N N 278 PRO CB CG sing N N 279 PRO CB HB2 sing N N 280 PRO CB HB3 sing N N 281 PRO CG CD sing N N 282 PRO CG HG2 sing N N 283 PRO CG HG3 sing N N 284 PRO CD HD2 sing N N 285 PRO CD HD3 sing N N 286 PRO OXT HXT sing N N 287 SER N CA sing N N 288 SER N H sing N N 289 SER N H2 sing N N 290 SER CA C sing N N 291 SER CA CB sing N N 292 SER CA HA sing N N 293 SER C O doub N N 294 SER C OXT sing N N 295 SER CB OG sing N N 296 SER CB HB2 sing N N 297 SER CB HB3 sing N N 298 SER OG HG sing N N 299 SER OXT HXT sing N N 300 THR N CA sing N N 301 THR N H sing N N 302 THR N H2 sing N N 303 THR CA C sing N N 304 THR CA CB sing N N 305 THR CA HA sing N N 306 THR C O doub N N 307 THR C OXT sing N N 308 THR CB OG1 sing N N 309 THR CB CG2 sing N N 310 THR CB HB sing N N 311 THR OG1 HG1 sing N N 312 THR CG2 HG21 sing N N 313 THR CG2 HG22 sing N N 314 THR CG2 HG23 sing N N 315 THR OXT HXT sing N N 316 TRP N CA sing N N 317 TRP N H sing N N 318 TRP N H2 sing N N 319 TRP CA C sing N N 320 TRP CA CB sing N N 321 TRP CA HA sing N N 322 TRP C O doub N N 323 TRP C OXT sing N N 324 TRP CB CG sing N N 325 TRP CB HB2 sing N N 326 TRP CB HB3 sing N N 327 TRP CG CD1 doub Y N 328 TRP CG CD2 sing Y N 329 TRP CD1 NE1 sing Y N 330 TRP CD1 HD1 sing N N 331 TRP CD2 CE2 doub Y N 332 TRP CD2 CE3 sing Y N 333 TRP NE1 CE2 sing Y N 334 TRP NE1 HE1 sing N N 335 TRP CE2 CZ2 sing Y N 336 TRP CE3 CZ3 doub Y N 337 TRP CE3 HE3 sing N N 338 TRP CZ2 CH2 doub Y N 339 TRP CZ2 HZ2 sing N N 340 TRP CZ3 CH2 sing Y N 341 TRP CZ3 HZ3 sing N N 342 TRP CH2 HH2 sing N N 343 TRP OXT HXT sing N N 344 TYR N CA sing N N 345 TYR N H sing N N 346 TYR N H2 sing N N 347 TYR CA C sing N N 348 TYR CA CB sing N N 349 TYR CA HA sing N N 350 TYR C O doub N N 351 TYR C OXT sing N N 352 TYR CB CG sing N N 353 TYR CB HB2 sing N N 354 TYR CB HB3 sing N N 355 TYR CG CD1 doub Y N 356 TYR CG CD2 sing Y N 357 TYR CD1 CE1 sing Y N 358 TYR CD1 HD1 sing N N 359 TYR CD2 CE2 doub Y N 360 TYR CD2 HD2 sing N N 361 TYR CE1 CZ doub Y N 362 TYR CE1 HE1 sing N N 363 TYR CE2 CZ sing Y N 364 TYR CE2 HE2 sing N N 365 TYR CZ OH sing N N 366 TYR OH HH sing N N 367 TYR OXT HXT sing N N 368 VAL N CA sing N N 369 VAL N H sing N N 370 VAL N H2 sing N N 371 VAL CA C sing N N 372 VAL CA CB sing N N 373 VAL CA HA sing N N 374 VAL C O doub N N 375 VAL C OXT sing N N 376 VAL CB CG1 sing N N 377 VAL CB CG2 sing N N 378 VAL CB HB sing N N 379 VAL CG1 HG11 sing N N 380 VAL CG1 HG12 sing N N 381 VAL CG1 HG13 sing N N 382 VAL CG2 HG21 sing N N 383 VAL CG2 HG22 sing N N 384 VAL CG2 HG23 sing N N 385 VAL OXT HXT sing N N 386 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 A NAG 1 L NAG 500 n B 2 NAG 2 A NAG 2 L NAG 501 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1LGV _pdbx_initial_refinement_model.details 'PDB ENTRY 1LGV' #