HEADER TRANSCRIPTION REGULATOR 04-MAY-10 3MVU TITLE CRYSTAL STRUCTURE OF A TENA FAMILY TRANSCRIPTION REGULATOR TITLE 2 (TM1040_3656) FROM SILICIBACTER SP. TM1040 AT 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TENA FAMILY TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RUEGERIA SP. TM1040; SOURCE 3 ORGANISM_TAXID: 292414; SOURCE 4 GENE: TM1040_3656; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS TENA/THI-4/PQQC FAMILY, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 TRANSCRIPTION, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 3MVU 1 REMARK SEQADV REVDAT 3 17-JUL-19 3MVU 1 REMARK LINK REVDAT 2 25-OCT-17 3MVU 1 REMARK REVDAT 1 26-MAY-10 3MVU 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A TENA FAMILY TRANSCRIPTION REGULATOR JRNL TITL 2 (TM1040_3656) FROM SILICIBACTER SP. TM1040 AT 1.80 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0059 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1132 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1530 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.2010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1722 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.476 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1855 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1272 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2502 ; 1.378 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3059 ; 0.908 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 238 ; 4.742 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;29.605 ;22.250 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 284 ;13.846 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;18.220 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 272 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2081 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 419 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 225 REMARK 3 ORIGIN FOR THE GROUP (A): 26.5590 16.3840 40.0830 REMARK 3 T TENSOR REMARK 3 T11: 0.1155 T22: 0.0470 REMARK 3 T33: 0.0280 T12: -0.0212 REMARK 3 T13: -0.0185 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 1.4730 L22: 1.5292 REMARK 3 L33: 1.6119 L12: 0.3749 REMARK 3 L13: 0.1605 L23: 0.1120 REMARK 3 S TENSOR REMARK 3 S11: 0.0063 S12: 0.2141 S13: -0.0697 REMARK 3 S21: -0.2415 S22: 0.0987 S23: 0.0077 REMARK 3 S31: 0.1394 S32: -0.0496 S33: -0.1051 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 4. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 5. CHLORIDE (CL) ION, IMIDAZOLE (IMD), AND REMARK 3 ETHYLENE GLYCOL (EDO) MOLECULES FROM THE PURIFICATION/ REMARK 3 CRYOPROTECTION SOLUTION ARE MODELED. 6. RESIDUES 84-91 HAVE POOR REMARK 3 ELECTRON DENSITY SUPPORT. REMARK 4 REMARK 4 3MVU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000059057. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97935,0.97882 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22224 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.66600 REMARK 200 R SYM FOR SHELL (I) : 0.66600 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M MAGNESIUM ACETATE, 22.0000% REMARK 280 POLYETHYLENE GLYCOL 8000, 0.1M SODIUM CACODYLATE PH 6.0, REMARK 280 NANODROP', VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.65750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.65750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.53950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.65750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.65750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.53950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.65750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.65750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.53950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.65750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.65750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.53950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A TETRAMER AS A REMARK 300 SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 65.31500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 65.31500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 107.07900 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 65.31500 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 65.31500 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 107.07900 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 40 CD OE1 OE2 REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 ILE A 94 CG1 CG2 CD1 REMARK 470 ILE A 100 CG1 CG2 CD1 REMARK 470 GLN A 102 CG CD OE1 NE2 REMARK 470 GLU A 103 CG CD OE1 OE2 REMARK 470 LYS A 149 CD CE NZ REMARK 470 GLU A 194 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 200 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 86 -78.43 -158.64 REMARK 500 GLU A 194 56.21 -90.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 226 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 232 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 233 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 234 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 235 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 236 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 237 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 238 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 239 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 394535 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3MVU A 1 225 UNP Q1GL43 Q1GL43_SILST 1 225 SEQADV 3MVU GLY A 0 UNP Q1GL43 EXPRESSION TAG SEQRES 1 A 226 GLY MSE SER GLU PRO TYR GLY LYS ALA PHE SER LEU MSE SEQRES 2 A 226 ARG ALA GLU ALA GLU PRO ALA TRP ARG ALA TYR THR HIS SEQRES 3 A 226 HIS ALA PHE VAL GLU GLY LEU LYS ALA GLY THR LEU PRO SEQRES 4 A 226 ARG GLU ALA PHE LEU HIS TYR LEU GLN GLN ASP TYR VAL SEQRES 5 A 226 PHE LEU ILE HIS PHE SER ARG ALA TRP ALA LEU ALA VAL SEQRES 6 A 226 VAL LYS SER GLU THR HIS SER GLU MSE LEU ALA ALA VAL SEQRES 7 A 226 GLY THR VAL ASN ALA LEU VAL ALA GLU GLU MSE GLN LEU SEQRES 8 A 226 HIS ILE GLY ILE CYS GLU ALA SER GLY ILE SER GLN GLU SEQRES 9 A 226 ALA LEU PHE ALA THR ARG GLU ARG ALA GLU ASN LEU ALA SEQRES 10 A 226 TYR THR ARG PHE VAL LEU GLU ALA GLY TYR SER GLY ASP SEQRES 11 A 226 LEU LEU ASP LEU LEU ALA ALA LEU ALA PRO CYS VAL MSE SEQRES 12 A 226 GLY TYR GLY GLU ILE GLY LYS ARG LEU THR ALA GLU ALA SEQRES 13 A 226 THR SER THR LEU TYR GLY ASP TRP ILE ASP THR TYR GLY SEQRES 14 A 226 GLY ASP ASP TYR GLN ALA ALA CYS LYS ALA VAL GLY THR SEQRES 15 A 226 LEU LEU ASP ASP ALA LEU GLU ARG ARG LEU GLY ALA GLU SEQRES 16 A 226 PHE THR SER SER PRO ARG TRP SER ARG LEU CYS GLN THR SEQRES 17 A 226 PHE HIS THR ALA THR GLU LEU GLU VAL GLY PHE TRP GLN SEQRES 18 A 226 MSE GLY LEU THR PRO MODRES 3MVU MSE A 1 MET SELENOMETHIONINE MODRES 3MVU MSE A 12 MET SELENOMETHIONINE MODRES 3MVU MSE A 73 MET SELENOMETHIONINE MODRES 3MVU MSE A 88 MET SELENOMETHIONINE MODRES 3MVU MSE A 142 MET SELENOMETHIONINE MODRES 3MVU MSE A 221 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 12 8 HET MSE A 73 13 HET MSE A 88 13 HET MSE A 142 8 HET MSE A 221 8 HET IMD A 226 5 HET EDO A 227 4 HET EDO A 228 4 HET EDO A 229 4 HET EDO A 230 4 HET EDO A 231 4 HET EDO A 232 4 HET EDO A 233 4 HET EDO A 234 4 HET EDO A 235 4 HET EDO A 236 4 HET EDO A 237 4 HET EDO A 238 4 HET CL A 239 1 HETNAM MSE SELENOMETHIONINE HETNAM IMD IMIDAZOLE HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 IMD C3 H5 N2 1+ FORMUL 3 EDO 12(C2 H6 O2) FORMUL 15 CL CL 1- FORMUL 16 HOH *107(H2 O) HELIX 1 1 GLY A 6 ALA A 16 1 11 HELIX 2 2 PRO A 18 HIS A 25 1 8 HELIX 3 3 HIS A 26 ALA A 34 1 9 HELIX 4 4 PRO A 38 LYS A 66 1 29 HELIX 5 5 THR A 69 ALA A 85 1 17 HELIX 6 6 GLU A 86 SER A 98 1 13 HELIX 7 7 SER A 101 ALA A 107 1 7 HELIX 8 8 ARG A 111 GLY A 128 1 18 HELIX 9 9 ASP A 129 ALA A 155 1 27 HELIX 10 10 TYR A 160 GLY A 169 1 10 HELIX 11 11 GLY A 169 GLY A 192 1 24 HELIX 12 12 GLU A 194 SER A 198 5 5 HELIX 13 13 PRO A 199 LEU A 223 1 25 LINK C MSE A 1 N SER A 2 1555 1555 1.33 LINK C LEU A 11 N MSE A 12 1555 1555 1.34 LINK C MSE A 12 N ARG A 13 1555 1555 1.33 LINK C GLU A 72 N MSE A 73 1555 1555 1.34 LINK C MSE A 73 N LEU A 74 1555 1555 1.32 LINK C GLU A 87 N MSE A 88 1555 1555 1.33 LINK C MSE A 88 N GLN A 89 1555 1555 1.33 LINK C VAL A 141 N MSE A 142 1555 1555 1.33 LINK C MSE A 142 N GLY A 143 1555 1555 1.33 LINK C GLN A 220 N MSE A 221 1555 1555 1.33 LINK C MSE A 221 N GLY A 222 1555 1555 1.32 CISPEP 1 GLU A 17 PRO A 18 0 2.12 SITE 1 AC1 7 ASP A 49 PHE A 52 CYS A 140 TYR A 144 SITE 2 AC1 7 GLU A 215 PHE A 218 EDO A 237 SITE 1 AC2 5 SER A 71 THR A 181 LEU A 182 ASP A 185 SITE 2 AC2 5 HOH A 264 SITE 1 AC3 6 ARG A 58 VAL A 65 LYS A 66 SER A 67 SITE 2 AC3 6 ARG A 203 EDO A 235 SITE 1 AC4 8 ARG A 109 GLN A 206 HIS A 209 THR A 210 SITE 2 AC4 8 GLU A 213 EDO A 230 EDO A 234 HOH A 294 SITE 1 AC5 8 ARG A 109 ALA A 112 THR A 210 GLU A 213 SITE 2 AC5 8 EDO A 229 EDO A 233 HOH A 247 HOH A 312 SITE 1 AC6 5 LYS A 7 ALA A 193 GLU A 194 PHE A 195 SITE 2 AC6 5 THR A 196 SITE 1 AC7 7 GLU A 68 ARG A 189 ARG A 190 PRO A 199 SITE 2 AC7 7 ARG A 200 ARG A 203 HOH A 248 SITE 1 AC8 5 ARG A 109 ARG A 111 ALA A 112 GLU A 113 SITE 2 AC8 5 EDO A 230 SITE 1 AC9 4 GLU A 15 GLN A 206 HIS A 209 EDO A 229 SITE 1 BC1 6 ALA A 124 ASP A 132 ARG A 203 THR A 207 SITE 2 BC1 6 EDO A 228 HOH A 306 SITE 1 BC2 3 ALA A 112 GLU A 113 HOH A 257 SITE 1 BC3 3 GLU A 87 TYR A 172 IMD A 226 SITE 1 BC4 2 GLU A 15 PRO A 18 SITE 1 BC5 3 HIS A 44 GLN A 48 HOH A 338 CRYST1 65.315 65.315 107.079 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015310 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015310 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009339 0.00000 HETATM 1 N MSE A 1 38.384 5.425 29.014 1.00104.73 N ANISOU 1 N MSE A 1 14244 13002 12545 312 730 -1820 N HETATM 2 CA MSE A 1 38.739 3.992 29.220 1.00101.40 C ANISOU 2 CA MSE A 1 13855 12427 12242 428 716 -1958 C HETATM 3 C MSE A 1 37.895 3.419 30.381 1.00 94.01 C ANISOU 3 C MSE A 1 12957 11335 11428 432 551 -1861 C HETATM 4 O MSE A 1 36.749 3.828 30.582 1.00 90.15 O ANISOU 4 O MSE A 1 12519 10852 10880 324 453 -1741 O HETATM 5 CB MSE A 1 40.251 3.838 29.497 1.00108.52 C ANISOU 5 CB MSE A 1 14615 13342 13273 572 825 -2044 C HETATM 6 CG MSE A 1 41.121 5.083 29.311 1.00115.35 C ANISOU 6 CG MSE A 1 15344 14384 14098 551 945 -1999 C HETATM 7 SE MSE A 1 41.513 5.988 31.008 0.75129.65 SE ANISOU 7 SE MSE A 1 16983 16196 16081 584 864 -1811 SE HETATM 8 CE MSE A 1 42.534 4.568 31.900 1.00121.25 C ANISOU 8 CE MSE A 1 15838 14973 15257 795 834 -1922 C