HEADER HYDROLASE 06-MAY-10 3MX6 TITLE CRYSTAL STRUCTURE OF METHIONINE AMINOPEPTIDASE FROM RICKETTSIA TITLE 2 PROWAZEKII BOUND TO METHIONINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE AMINOPEPTIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 3-259; COMPND 5 SYNONYM: MAP, PEPTIDASE M; COMPND 6 EC: 3.4.11.18; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RICKETTSIA PROWAZEKII; SOURCE 3 ORGANISM_TAXID: 782; SOURCE 4 GENE: MAP, RP824; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, KEYWDS 2 AMINOPEPTIDASE, PROTEASE, EPIDERMIC TYPHUS, LICE-BORN PATHOGEN, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 06-SEP-23 3MX6 1 REMARK SEQADV LINK REVDAT 3 15-FEB-17 3MX6 1 JRNL REVDAT 2 08-FEB-17 3MX6 1 JRNL VERSN REVDAT 1 26-MAY-10 3MX6 0 JRNL AUTH T.R.HELGREN,C.CHEN,P.WANGTRAKULDEE,T.E.EDWARDS,B.L.STAKER, JRNL AUTH 2 J.ABENDROTH,B.SANKARAN,N.A.HOUSLEY,P.J.MYLER,J.P.AUDIA, JRNL AUTH 3 J.R.HORN,T.J.HAGEN JRNL TITL RICKETTSIA PROWAZEKII METHIONINE AMINOPEPTIDASE AS A JRNL TITL 2 PROMISING TARGET FOR THE DEVELOPMENT OF ANTIBACTERIAL JRNL TITL 3 AGENTS. JRNL REF BIOORG.MED.CHEM. V. 25 813 2017 JRNL REFN ISSN 0968-0896 JRNL PMID 28089350 JRNL DOI 10.1016/J.BMC.2016.11.013 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 57978 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2932 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3385 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 197 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4028 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 747 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.80000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : -0.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.882 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4184 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5690 ; 1.429 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 529 ; 5.944 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 177 ;32.354 ;24.350 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 705 ;11.459 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;19.515 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 640 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3159 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2598 ; 0.742 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4227 ; 1.282 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1586 ; 2.357 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1456 ; 3.828 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 4.4361 13.8873 34.5718 REMARK 3 T TENSOR REMARK 3 T11: 0.0074 T22: 0.0092 REMARK 3 T33: 0.0152 T12: -0.0049 REMARK 3 T13: 0.0018 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.1337 L22: 0.2863 REMARK 3 L33: 0.3805 L12: 0.0356 REMARK 3 L13: -0.0527 L23: 0.1611 REMARK 3 S TENSOR REMARK 3 S11: 0.0091 S12: -0.0064 S13: -0.0178 REMARK 3 S21: 0.0063 S22: -0.0276 S23: 0.0079 REMARK 3 S31: -0.0323 S32: 0.0083 S33: 0.0185 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -10 B 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 8.0601 -15.0158 7.3340 REMARK 3 T TENSOR REMARK 3 T11: 0.0037 T22: 0.0140 REMARK 3 T33: 0.0190 T12: 0.0015 REMARK 3 T13: -0.0060 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.1806 L22: 0.1910 REMARK 3 L33: 0.3386 L12: -0.0490 REMARK 3 L13: 0.0490 L23: 0.1377 REMARK 3 S TENSOR REMARK 3 S11: -0.0014 S12: 0.0169 S13: 0.0037 REMARK 3 S21: 0.0065 S22: -0.0115 S23: 0.0061 REMARK 3 S31: 0.0191 S32: 0.0172 S33: 0.0129 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3MX6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000059105. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58037 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.18500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 3MR1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM SULFATE, 0.1 M BISTRIS REMARK 280 PROPANE, 20% PEG 3350, 20% ETHYLENE GLYCOL AS CRYO-PROTECTANT, REMARK 280 25.2 MG/ML PROTEIN, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.77500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 LYS A 177 CG CD CE NZ REMARK 470 LYS A 240 CG CD CE NZ REMARK 470 ARG B 185 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 240 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 128 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 34 -3.25 78.87 REMARK 500 ASN A 72 -110.26 51.99 REMARK 500 TRP A 219 -50.30 -135.25 REMARK 500 ASN B 72 -111.49 56.43 REMARK 500 TRP B 219 -48.85 -132.39 REMARK 500 ASP B 241 20.02 -141.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 261 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 72 O REMARK 620 2 VAL A 74 O 97.9 REMARK 620 3 SER A 229 O 91.7 127.1 REMARK 620 4 HOH A 269 O 114.8 123.9 97.4 REMARK 620 5 HOH A 371 O 167.8 91.8 76.4 64.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 260 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 94 OD1 REMARK 620 2 ASP A 94 OD2 53.8 REMARK 620 3 ASP A 105 OD1 106.6 160.0 REMARK 620 4 GLU A 233 OE1 96.0 97.4 87.9 REMARK 620 5 MET A 262 O 143.6 89.8 109.7 87.3 REMARK 620 6 HOH A 532 O 93.7 91.2 85.8 169.7 87.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 259 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 105 OD2 REMARK 620 2 HIS A 168 NE2 90.4 REMARK 620 3 GLU A 201 OE1 151.5 86.0 REMARK 620 4 GLU A 233 OE2 78.5 120.1 78.9 REMARK 620 5 MET A 262 O 92.7 138.9 108.5 100.7 REMARK 620 6 MET A 262 OXT 97.7 84.1 110.0 155.3 54.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 261 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 72 O REMARK 620 2 VAL B 74 O 97.2 REMARK 620 3 SER B 229 O 94.5 124.6 REMARK 620 4 HOH B 270 O 119.8 120.7 98.6 REMARK 620 5 HOH B 310 O 168.7 89.7 74.2 63.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 260 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 94 OD1 REMARK 620 2 ASP B 94 OD2 56.1 REMARK 620 3 ASP B 105 OD1 106.1 162.0 REMARK 620 4 GLU B 233 OE1 95.4 96.5 87.7 REMARK 620 5 MET B 262 O 147.0 90.9 106.7 89.6 REMARK 620 6 HOH B 496 O 91.7 90.6 86.7 171.9 86.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 259 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 105 OD2 REMARK 620 2 HIS B 168 NE2 90.3 REMARK 620 3 GLU B 201 OE1 152.1 85.6 REMARK 620 4 GLU B 233 OE2 81.0 123.2 78.3 REMARK 620 5 MET B 262 O 92.5 137.9 109.0 98.7 REMARK 620 6 MET B 262 OXT 97.3 82.2 109.4 154.4 55.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MET A 262 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MET B 262 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 259 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 259 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 261 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MR1 RELATED DB: PDB REMARK 900 SHORTER CONSTRUCT BOUND TO SULFATE REMARK 900 RELATED ID: RIPRA.00039.A RELATED DB: TARGETDB DBREF 3MX6 A 2 258 UNP Q9ZCD3 AMPM_RICPR 3 259 DBREF 3MX6 B 2 258 UNP Q9ZCD3 AMPM_RICPR 3 259 SEQADV 3MX6 GLY A -3 UNP Q9ZCD3 EXPRESSION TAG SEQADV 3MX6 PRO A -2 UNP Q9ZCD3 EXPRESSION TAG SEQADV 3MX6 GLY A -1 UNP Q9ZCD3 EXPRESSION TAG SEQADV 3MX6 SER A 0 UNP Q9ZCD3 EXPRESSION TAG SEQADV 3MX6 MET A 1 UNP Q9ZCD3 EXPRESSION TAG SEQADV 3MX6 GLY B -3 UNP Q9ZCD3 EXPRESSION TAG SEQADV 3MX6 PRO B -2 UNP Q9ZCD3 EXPRESSION TAG SEQADV 3MX6 GLY B -1 UNP Q9ZCD3 EXPRESSION TAG SEQADV 3MX6 SER B 0 UNP Q9ZCD3 EXPRESSION TAG SEQADV 3MX6 MET B 1 UNP Q9ZCD3 EXPRESSION TAG SEQRES 1 A 262 GLY PRO GLY SER MET ILE LYS ILE HIS THR GLU LYS ASP SEQRES 2 A 262 PHE ILE LYS MET ARG ALA ALA GLY LYS LEU ALA ALA GLU SEQRES 3 A 262 THR LEU ASP PHE ILE THR ASP HIS VAL LYS PRO ASN VAL SEQRES 4 A 262 THR THR ASN SER LEU ASN ASP LEU CYS HIS ASN PHE ILE SEQRES 5 A 262 THR SER HIS ASN ALA ILE PRO ALA PRO LEU ASN TYR LYS SEQRES 6 A 262 GLY PHE PRO LYS SER ILE CYS THR SER ILE ASN HIS VAL SEQRES 7 A 262 VAL CYS HIS GLY ILE PRO ASN ASP LYS PRO LEU LYS ASN SEQRES 8 A 262 GLY ASP ILE VAL ASN ILE ASP VAL THR VAL ILE LEU ASP SEQRES 9 A 262 GLY TRP TYR GLY ASP THR SER ARG MET TYR TYR VAL GLY SEQRES 10 A 262 ASP VAL ALA ILE LYS PRO LYS ARG LEU ILE GLN VAL THR SEQRES 11 A 262 TYR ASP ALA MET MET LYS GLY ILE GLU VAL VAL ARG PRO SEQRES 12 A 262 GLY ALA LYS LEU GLY ASP ILE GLY TYR ALA ILE GLN SER SEQRES 13 A 262 TYR ALA GLU LYS HIS ASN TYR SER VAL VAL ARG ASP TYR SEQRES 14 A 262 THR GLY HIS GLY ILE GLY ARG VAL PHE HIS ASP LYS PRO SEQRES 15 A 262 SER ILE LEU ASN TYR GLY ARG ASN GLY THR GLY LEU THR SEQRES 16 A 262 LEU LYS GLU GLY MET PHE PHE THR VAL GLU PRO MET ILE SEQRES 17 A 262 ASN ALA GLY ASN TYR ASP THR ILE LEU SER LYS LEU ASP SEQRES 18 A 262 GLY TRP THR VAL THR THR ARG ASP LYS SER LEU SER ALA SEQRES 19 A 262 GLN PHE GLU HIS THR ILE GLY VAL THR LYS ASP GLY PHE SEQRES 20 A 262 GLU ILE PHE THR LEU SER PRO LYS LYS LEU ASP TYR PRO SEQRES 21 A 262 PRO TYR SEQRES 1 B 262 GLY PRO GLY SER MET ILE LYS ILE HIS THR GLU LYS ASP SEQRES 2 B 262 PHE ILE LYS MET ARG ALA ALA GLY LYS LEU ALA ALA GLU SEQRES 3 B 262 THR LEU ASP PHE ILE THR ASP HIS VAL LYS PRO ASN VAL SEQRES 4 B 262 THR THR ASN SER LEU ASN ASP LEU CYS HIS ASN PHE ILE SEQRES 5 B 262 THR SER HIS ASN ALA ILE PRO ALA PRO LEU ASN TYR LYS SEQRES 6 B 262 GLY PHE PRO LYS SER ILE CYS THR SER ILE ASN HIS VAL SEQRES 7 B 262 VAL CYS HIS GLY ILE PRO ASN ASP LYS PRO LEU LYS ASN SEQRES 8 B 262 GLY ASP ILE VAL ASN ILE ASP VAL THR VAL ILE LEU ASP SEQRES 9 B 262 GLY TRP TYR GLY ASP THR SER ARG MET TYR TYR VAL GLY SEQRES 10 B 262 ASP VAL ALA ILE LYS PRO LYS ARG LEU ILE GLN VAL THR SEQRES 11 B 262 TYR ASP ALA MET MET LYS GLY ILE GLU VAL VAL ARG PRO SEQRES 12 B 262 GLY ALA LYS LEU GLY ASP ILE GLY TYR ALA ILE GLN SER SEQRES 13 B 262 TYR ALA GLU LYS HIS ASN TYR SER VAL VAL ARG ASP TYR SEQRES 14 B 262 THR GLY HIS GLY ILE GLY ARG VAL PHE HIS ASP LYS PRO SEQRES 15 B 262 SER ILE LEU ASN TYR GLY ARG ASN GLY THR GLY LEU THR SEQRES 16 B 262 LEU LYS GLU GLY MET PHE PHE THR VAL GLU PRO MET ILE SEQRES 17 B 262 ASN ALA GLY ASN TYR ASP THR ILE LEU SER LYS LEU ASP SEQRES 18 B 262 GLY TRP THR VAL THR THR ARG ASP LYS SER LEU SER ALA SEQRES 19 B 262 GLN PHE GLU HIS THR ILE GLY VAL THR LYS ASP GLY PHE SEQRES 20 B 262 GLU ILE PHE THR LEU SER PRO LYS LYS LEU ASP TYR PRO SEQRES 21 B 262 PRO TYR HET MET A 262 9 HET MN A 259 1 HET MN A 260 1 HET NA A 261 1 HET MET B 262 9 HET MN B 259 1 HET MN B 260 1 HET NA B 261 1 HETNAM MET METHIONINE HETNAM MN MANGANESE (II) ION HETNAM NA SODIUM ION FORMUL 3 MET 2(C5 H11 N O2 S) FORMUL 4 MN 4(MN 2+) FORMUL 6 NA 2(NA 1+) FORMUL 11 HOH *747(H2 O) HELIX 1 1 THR A 6 THR A 28 1 23 HELIX 2 2 ASP A 29 VAL A 31 5 3 HELIX 3 3 THR A 36 HIS A 51 1 16 HELIX 4 4 ASN A 59 PHE A 63 5 5 HELIX 5 5 ALA A 116 VAL A 136 1 21 HELIX 6 6 LYS A 142 HIS A 157 1 16 HELIX 7 7 THR B 6 THR B 28 1 23 HELIX 8 8 ASP B 29 VAL B 31 5 3 HELIX 9 9 THR B 36 HIS B 51 1 16 HELIX 10 10 ASN B 59 PHE B 63 5 5 HELIX 11 11 ALA B 116 VAL B 136 1 21 HELIX 12 12 LYS B 142 HIS B 157 1 16 SHEET 1 A 3 ILE A 54 PRO A 55 0 SHEET 2 A 3 ILE A 90 LEU A 99 -1 O ILE A 98 N ILE A 54 SHEET 3 A 3 CYS A 68 ILE A 71 -1 N SER A 70 O ASN A 92 SHEET 1 B 3 ILE A 54 PRO A 55 0 SHEET 2 B 3 ILE A 90 LEU A 99 -1 O ILE A 98 N ILE A 54 SHEET 3 B 3 TRP A 102 TYR A 111 -1 O THR A 106 N VAL A 95 SHEET 1 C 3 VAL A 74 CYS A 76 0 SHEET 2 C 3 VAL A 221 THR A 223 -1 O VAL A 221 N VAL A 75 SHEET 3 C 3 THR A 211 LEU A 213 -1 N ILE A 212 O THR A 222 SHEET 1 D 3 SER A 160 VAL A 161 0 SHEET 2 D 3 MET A 203 ASN A 205 -1 O ASN A 205 N SER A 160 SHEET 3 D 3 SER A 229 GLN A 231 -1 O ALA A 230 N ILE A 204 SHEET 1 E 2 GLY A 167 GLY A 169 0 SHEET 2 E 2 ASP A 176 ILE A 180 -1 O ASP A 176 N GLY A 169 SHEET 1 F 3 PHE A 197 VAL A 200 0 SHEET 2 F 3 HIS A 234 VAL A 238 -1 O ILE A 236 N PHE A 198 SHEET 3 F 3 PHE A 243 ILE A 245 -1 O GLU A 244 N GLY A 237 SHEET 1 G 3 ILE B 54 PRO B 55 0 SHEET 2 G 3 ILE B 90 LEU B 99 -1 O ILE B 98 N ILE B 54 SHEET 3 G 3 CYS B 68 ILE B 71 -1 N SER B 70 O ASN B 92 SHEET 1 H 3 ILE B 54 PRO B 55 0 SHEET 2 H 3 ILE B 90 LEU B 99 -1 O ILE B 98 N ILE B 54 SHEET 3 H 3 TRP B 102 TYR B 111 -1 O THR B 106 N VAL B 95 SHEET 1 I 3 VAL B 74 CYS B 76 0 SHEET 2 I 3 VAL B 221 THR B 223 -1 O VAL B 221 N VAL B 75 SHEET 3 I 3 THR B 211 LEU B 213 -1 N ILE B 212 O THR B 222 SHEET 1 J 3 SER B 160 VAL B 161 0 SHEET 2 J 3 MET B 203 ASN B 205 -1 O ASN B 205 N SER B 160 SHEET 3 J 3 SER B 229 GLN B 231 -1 O ALA B 230 N ILE B 204 SHEET 1 K 2 GLY B 167 GLY B 169 0 SHEET 2 K 2 ASP B 176 ILE B 180 -1 O ASP B 176 N GLY B 169 SHEET 1 L 3 PHE B 197 VAL B 200 0 SHEET 2 L 3 HIS B 234 VAL B 238 -1 O ILE B 236 N PHE B 198 SHEET 3 L 3 PHE B 243 ILE B 245 -1 O GLU B 244 N GLY B 237 LINK O ASN A 72 NA NA A 261 1555 1555 2.32 LINK O VAL A 74 NA NA A 261 1555 1555 2.24 LINK OD1 ASP A 94 MN MN A 260 1555 1555 2.08 LINK OD2 ASP A 94 MN MN A 260 1555 1555 2.55 LINK OD2 ASP A 105 MN MN A 259 1555 1555 2.25 LINK OD1 ASP A 105 MN MN A 260 1555 1555 2.07 LINK NE2 HIS A 168 MN MN A 259 1555 1555 2.14 LINK OE1 GLU A 201 MN MN A 259 1555 1555 2.18 LINK O SER A 229 NA NA A 261 1555 1555 2.29 LINK OE2 GLU A 233 MN MN A 259 1555 1555 2.18 LINK OE1 GLU A 233 MN MN A 260 1555 1555 2.27 LINK MN MN A 259 O MET A 262 1555 1555 2.21 LINK MN MN A 259 OXT MET A 262 1555 1555 2.45 LINK MN MN A 260 O MET A 262 1555 1555 2.14 LINK MN MN A 260 O HOH A 532 1555 1555 2.28 LINK NA NA A 261 O HOH A 269 1555 1555 2.29 LINK NA NA A 261 O HOH A 371 1555 1555 3.10 LINK O ASN B 72 NA NA B 261 1555 1555 2.29 LINK O VAL B 74 NA NA B 261 1555 1555 2.31 LINK OD1 ASP B 94 MN MN B 260 1555 1555 2.05 LINK OD2 ASP B 94 MN MN B 260 1555 1555 2.41 LINK OD2 ASP B 105 MN MN B 259 1555 1555 2.27 LINK OD1 ASP B 105 MN MN B 260 1555 1555 2.07 LINK NE2 HIS B 168 MN MN B 259 1555 1555 2.13 LINK OE1 GLU B 201 MN MN B 259 1555 1555 2.19 LINK O SER B 229 NA NA B 261 1555 1555 2.26 LINK OE2 GLU B 233 MN MN B 259 1555 1555 2.15 LINK OE1 GLU B 233 MN MN B 260 1555 1555 2.23 LINK MN MN B 259 O MET B 262 1555 1555 2.18 LINK MN MN B 259 OXT MET B 262 1555 1555 2.36 LINK MN MN B 260 O MET B 262 1555 1555 2.16 LINK MN MN B 260 O HOH B 496 1555 1555 2.27 LINK NA NA B 261 O HOH B 270 1555 1555 2.24 LINK NA NA B 261 O HOH B 310 1555 1555 3.18 CISPEP 1 LYS A 177 PRO A 178 0 -0.73 CISPEP 2 PRO A 256 PRO A 257 0 -2.28 CISPEP 3 LYS B 177 PRO B 178 0 -2.71 CISPEP 4 PRO B 256 PRO B 257 0 1.32 SITE 1 AC1 14 PHE A 63 HIS A 77 ASP A 94 ASP A 105 SITE 2 AC1 14 HIS A 168 HIS A 175 GLU A 201 TRP A 219 SITE 3 AC1 14 GLU A 233 MN A 259 MN A 260 HOH A 463 SITE 4 AC1 14 HOH A 532 HOH A 623 SITE 1 AC2 13 PHE B 63 HIS B 77 ASP B 94 ASP B 105 SITE 2 AC2 13 HIS B 168 HIS B 175 GLU B 201 GLU B 233 SITE 3 AC2 13 MN B 259 MN B 260 HOH B 346 HOH B 496 SITE 4 AC2 13 HOH B 625 SITE 1 AC3 6 ASP A 105 HIS A 168 GLU A 201 GLU A 233 SITE 2 AC3 6 MN A 260 MET A 262 SITE 1 AC4 6 ASP A 94 ASP A 105 GLU A 233 MN A 259 SITE 2 AC4 6 MET A 262 HOH A 532 SITE 1 AC5 4 ASN A 72 VAL A 74 SER A 229 HOH A 269 SITE 1 AC6 6 ASP B 105 HIS B 168 GLU B 201 GLU B 233 SITE 2 AC6 6 MN B 260 MET B 262 SITE 1 AC7 6 ASP B 94 ASP B 105 GLU B 233 MN B 259 SITE 2 AC7 6 MET B 262 HOH B 496 SITE 1 AC8 4 ASN B 72 VAL B 74 SER B 229 HOH B 270 CRYST1 50.370 67.550 80.890 90.00 97.43 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019853 0.000000 0.002589 0.00000 SCALE2 0.000000 0.014804 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012467 0.00000