HEADER TRANSPORT PROTEIN 09-MAY-10 3MY2 TITLE CRYSTAL STRUCTURE OF LPTC COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOPOLYSACCHARIDE EXPORT SYSTEM PROTEIN LPTC; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 511145; SOURCE 4 STRAIN: K12 SUBSTR. MG1655; SOURCE 5 GENE: B3199, JW3166, LPTC, YRBK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TOP10; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PBAD; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBAD24 KEYWDS LPTC, LIPOPOLYSACCHARIDE EXPORT PATHWAY, STRUCTURAL GENOMICS, KEYWDS 2 SCOTTISH STRUCTURAL PROTEOMICS FACILITY, SSPF, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.X.TRAN,C.DONG,C.WHITFIELD,SCOTTISH STRUCTURAL PROTEOMICS FACILITY AUTHOR 2 (SSPF) REVDAT 2 03-NOV-10 3MY2 1 JRNL REVDAT 1 01-SEP-10 3MY2 0 JRNL AUTH A.X.TRAN,C.DONG,C.WHITFIELD JRNL TITL STRUCTURE AND FUNCTIONAL ANALYSIS OF LPTC, A CONSERVED JRNL TITL 2 MEMBRANE PROTEIN INVOLVED IN THE LIPOPOLYSACCHARIDE EXPORT JRNL TITL 3 PATHWAY IN ESCHERICHIA COLI. JRNL REF J.BIOL.CHEM. V. 285 33529 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20720015 JRNL DOI 10.1074/JBC.M110.144709 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 13542 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 718 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 970 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1018 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 71 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.83000 REMARK 3 B22 (A**2) : -1.83000 REMARK 3 B33 (A**2) : 3.66000 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.141 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.626 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1037 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1407 ; 2.056 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 125 ; 6.280 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 50 ;35.042 ;24.800 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 177 ;14.937 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;24.667 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 167 ; 0.151 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 763 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 350 ; 0.186 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 702 ; 0.296 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 65 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.206 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.108 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 630 ; 1.159 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1024 ; 2.218 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 407 ; 3.849 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 381 ; 6.036 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 59 A 184 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0241 27.7632 1.0721 REMARK 3 T TENSOR REMARK 3 T11: 0.0317 T22: 0.0328 REMARK 3 T33: 0.0517 T12: -0.0123 REMARK 3 T13: -0.0053 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 4.6171 L22: 4.0561 REMARK 3 L33: 1.6022 L12: -3.1588 REMARK 3 L13: -0.9792 L23: 0.9829 REMARK 3 S TENSOR REMARK 3 S11: -0.0776 S12: -0.1199 S13: 0.1550 REMARK 3 S21: 0.0568 S22: 0.0699 S23: -0.1966 REMARK 3 S31: -0.1620 S32: 0.0382 S33: 0.0076 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 192 A 262 REMARK 3 ORIGIN FOR THE GROUP (A): -0.4265 27.4513 0.2134 REMARK 3 T TENSOR REMARK 3 T11: 0.1241 T22: 0.1518 REMARK 3 T33: 0.1328 T12: -0.0308 REMARK 3 T13: -0.0042 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 3.0979 L22: 2.3028 REMARK 3 L33: 1.7435 L12: -2.0014 REMARK 3 L13: 0.0868 L23: -0.0985 REMARK 3 S TENSOR REMARK 3 S11: -0.0709 S12: -0.0404 S13: 0.0376 REMARK 3 S21: 0.0583 S22: 0.0764 S23: 0.0844 REMARK 3 S31: 0.0112 S32: -0.0354 S33: -0.0055 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MY2 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAY-10. REMARK 100 THE RCSB ID CODE IS RCSB059137. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9764 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14109 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 37.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : 0.09900 REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.60400 REMARK 200 R SYM FOR SHELL (I) : 0.70900 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.04 M K2SO4, 16% PEG8000, 20% REMARK 280 GLYCEROL, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.22000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.10500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.10500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.33000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.10500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.10500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 15.11000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.10500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.10500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 45.33000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.10500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.10500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 15.11000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 30.22000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 HIS A 21 REMARK 465 HIS A 22 REMARK 465 ASN A 23 REMARK 465 MSE A 24 REMARK 465 ALA A 25 REMARK 465 GLU A 26 REMARK 465 LYS A 27 REMARK 465 ASP A 28 REMARK 465 ASP A 29 REMARK 465 THR A 30 REMARK 465 ALA A 31 REMARK 465 GLN A 32 REMARK 465 VAL A 33 REMARK 465 VAL A 34 REMARK 465 VAL A 35 REMARK 465 ASN A 36 REMARK 465 ASN A 37 REMARK 465 ASN A 38 REMARK 465 ASP A 39 REMARK 465 PRO A 40 REMARK 465 THR A 41 REMARK 465 TYR A 42 REMARK 465 LYS A 43 REMARK 465 SER A 44 REMARK 465 GLU A 45 REMARK 465 HIS A 46 REMARK 465 THR A 47 REMARK 465 ASP A 48 REMARK 465 THR A 49 REMARK 465 LEU A 50 REMARK 465 VAL A 51 REMARK 465 TYR A 52 REMARK 465 ASN A 53 REMARK 465 PRO A 54 REMARK 465 GLU A 55 REMARK 465 GLY A 56 REMARK 465 ALA A 57 REMARK 465 LEU A 58 REMARK 465 GLN A 185 REMARK 465 ASN A 186 REMARK 465 LYS A 187 REMARK 465 GLN A 188 REMARK 465 THR A 189 REMARK 465 GLN A 190 REMARK 465 PRO A 191 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 90 CG CD CE NZ REMARK 480 ARG A 179 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 179 CD ARG A 179 NE -0.176 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 65 -118.68 -85.04 REMARK 500 LYS A 162 158.88 75.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 107 -14.46 REMARK 500 MSE A 108 17.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ILE A 184 24.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL DBREF 3MY2 A 23 191 UNP P0ADV9 LPTC_ECOLI 23 191 SEQADV 3MY2 HIS A 17 UNP P0ADV9 EXPRESSION TAG SEQADV 3MY2 HIS A 18 UNP P0ADV9 EXPRESSION TAG SEQADV 3MY2 HIS A 19 UNP P0ADV9 EXPRESSION TAG SEQADV 3MY2 HIS A 20 UNP P0ADV9 EXPRESSION TAG SEQADV 3MY2 HIS A 21 UNP P0ADV9 EXPRESSION TAG SEQADV 3MY2 HIS A 22 UNP P0ADV9 EXPRESSION TAG SEQRES 1 A 175 HIS HIS HIS HIS HIS HIS ASN MSE ALA GLU LYS ASP ASP SEQRES 2 A 175 THR ALA GLN VAL VAL VAL ASN ASN ASN ASP PRO THR TYR SEQRES 3 A 175 LYS SER GLU HIS THR ASP THR LEU VAL TYR ASN PRO GLU SEQRES 4 A 175 GLY ALA LEU SER TYR ARG LEU ILE ALA GLN HIS VAL GLU SEQRES 5 A 175 TYR TYR SER ASP GLN ALA VAL SER TRP PHE THR GLN PRO SEQRES 6 A 175 VAL LEU THR THR PHE ASP LYS ASP LYS ILE PRO THR TRP SEQRES 7 A 175 SER VAL LYS ALA ASP LYS ALA LYS LEU THR ASN ASP ARG SEQRES 8 A 175 MSE LEU TYR LEU TYR GLY HIS VAL GLU VAL ASN ALA LEU SEQRES 9 A 175 VAL PRO ASP SER GLN LEU ARG ARG ILE THR THR ASP ASN SEQRES 10 A 175 ALA GLN ILE ASN LEU VAL THR GLN ASP VAL THR SER GLU SEQRES 11 A 175 ASP LEU VAL THR LEU TYR GLY THR THR PHE ASN SER SER SEQRES 12 A 175 GLY LEU LYS MSE ARG GLY ASN LEU ARG SER LYS ASN ALA SEQRES 13 A 175 GLU LEU ILE GLU LYS VAL ARG THR SER TYR GLU ILE GLN SEQRES 14 A 175 ASN LYS GLN THR GLN PRO MODRES 3MY2 MSE A 108 MET SELENOMETHIONINE MODRES 3MY2 MSE A 163 MET SELENOMETHIONINE HET MSE A 108 8 HET MSE A 163 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 HOH *71(H2 O) SHEET 1 A 7 TYR A 60 ILE A 63 0 SHEET 2 A 7 VAL A 82 PHE A 86 -1 O THR A 84 N ARG A 61 SHEET 3 A 7 PRO A 92 LYS A 97 -1 O VAL A 96 N LEU A 83 SHEET 4 A 7 MSE A 108 ALA A 119 -1 O ASN A 118 N SER A 95 SHEET 5 A 7 LYS A 100 LEU A 103 -1 N LYS A 102 O TYR A 110 SHEET 6 A 7 VAL A 75 THR A 79 -1 N PHE A 78 O ALA A 101 SHEET 7 A 7 VAL A 67 TYR A 70 -1 N GLU A 68 O TRP A 77 SHEET 1 B 8 TYR A 60 ILE A 63 0 SHEET 2 B 8 VAL A 82 PHE A 86 -1 O THR A 84 N ARG A 61 SHEET 3 B 8 PRO A 92 LYS A 97 -1 O VAL A 96 N LEU A 83 SHEET 4 B 8 MSE A 108 ALA A 119 -1 O ASN A 118 N SER A 95 SHEET 5 B 8 LEU A 126 ASN A 137 -1 O ILE A 129 N VAL A 117 SHEET 6 B 8 ASP A 142 GLY A 153 -1 O TYR A 152 N ARG A 128 SHEET 7 B 8 ASN A 157 ASN A 166 -1 O MSE A 163 N SER A 145 SHEET 8 B 8 ASN A 171 THR A 180 -1 O ARG A 179 N SER A 159 LINK C ARG A 107 N MSE A 108 1555 1555 1.36 LINK C MSE A 108 N LEU A 109 1555 1555 1.51 LINK C LYS A 162 N MSE A 163 1555 1555 1.41 LINK C MSE A 163 N ARG A 164 1555 1555 1.37 CRYST1 94.210 94.210 60.440 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010615 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010615 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016545 0.00000