HEADER ISOMERASE 10-MAY-10 3MY9 TITLE CRYSTAL STRUCTURE OF A MUCONATE CYCLOISOMERASE FROM AZORHIZOBIUM TITLE 2 CAULINODANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MUCONATE CYCLOISOMERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AZORHIZOBIUM CAULINODANS; SOURCE 3 ORGANISM_TAXID: 438753; SOURCE 4 STRAIN: ORS 571; SOURCE 5 GENE: AZC_0819; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, ISOMERASE, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR C.E.QUARTARARO,U.RAMAGOPAL,J.B.BONANNO,M.RUTTER,K.T.BAIN,S.MILLER, AUTHOR 2 R.TORO,J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER AUTHOR 3 FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 5 21-FEB-24 3MY9 1 REMARK REVDAT 4 10-FEB-21 3MY9 1 AUTHOR JRNL REMARK LINK REVDAT 3 21-NOV-18 3MY9 1 AUTHOR REVDAT 2 08-NOV-17 3MY9 1 REMARK REVDAT 1 07-JUL-10 3MY9 0 JRNL AUTH C.E.QUARTARARO,U.RAMAGOPAL,J.B.BONANNO,M.RUTTER,K.T.BAIN, JRNL AUTH 2 S.MILLER,R.TORO,J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF A MUCONATE CYCLOISOMERASE FROM JRNL TITL 2 AZORHIZOBIUM CAULINODANS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20893 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1072 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1422 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2640 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.49000 REMARK 3 B22 (A**2) : -0.49000 REMARK 3 B33 (A**2) : 0.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.210 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.061 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2688 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1822 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3640 ; 1.381 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4440 ; 0.907 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 354 ; 5.826 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;33.841 ;23.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 445 ;14.666 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;17.179 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 427 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2997 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 530 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1767 ; 0.715 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 727 ; 0.152 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2809 ; 1.312 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 921 ; 2.083 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 831 ; 3.165 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 372 REMARK 3 ORIGIN FOR THE GROUP (A): 31.1880 12.5100 12.9330 REMARK 3 T TENSOR REMARK 3 T11: 0.1383 T22: 0.3394 REMARK 3 T33: 0.2465 T12: -0.0739 REMARK 3 T13: -0.0316 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 1.5293 L22: 2.1296 REMARK 3 L33: 1.8100 L12: 1.3310 REMARK 3 L13: -0.6275 L23: -1.3437 REMARK 3 S TENSOR REMARK 3 S11: -0.0122 S12: -0.0467 S13: -0.2280 REMARK 3 S21: 0.0089 S22: -0.1860 S23: -0.4500 REMARK 3 S31: -0.0939 S32: 0.6530 S33: 0.1982 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3MY9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000059144. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20957 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.50 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : 0.09700 REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 19.30 REMARK 200 R MERGE FOR SHELL (I) : 0.55300 REMARK 200 R SYM FOR SHELL (I) : 0.55300 REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM BIS-TRIS PH 5.5, 300MM MAGNESIUM REMARK 280 FORMATE DIHYDRATE, VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 63.99650 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 63.99650 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 49.01800 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 63.99650 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 63.99650 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 49.01800 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 63.99650 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 63.99650 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 49.01800 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 63.99650 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 63.99650 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 49.01800 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 63.99650 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 63.99650 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 49.01800 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 63.99650 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 63.99650 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 49.01800 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 63.99650 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 63.99650 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 49.01800 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 63.99650 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 63.99650 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 49.01800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT IS PROBABLE OCTAMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 99410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -196.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 LEU A 1 REMARK 465 ALA A 22 REMARK 465 ARG A 23 REMARK 465 LEU A 24 REMARK 465 GLN A 25 REMARK 465 GLY A 26 REMARK 465 VAL A 27 REMARK 465 GLY A 28 REMARK 465 ASN A 29 REMARK 465 VAL A 30 REMARK 465 LYS A 31 REMARK 465 GLU A 57 REMARK 465 VAL A 58 REMARK 465 PHE A 59 REMARK 465 THR A 60 REMARK 465 GLY A 61 REMARK 465 ALA A 374 REMARK 465 GLU A 375 REMARK 465 ARG A 376 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 MET A 21 CG SD CE REMARK 470 LYS A 35 CG CD CE NZ REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 TYR A 73 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 92 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 274 CG CD CE NZ REMARK 470 MET A 328 CG SD CE REMARK 470 PRO A 329 CG CD REMARK 470 HIS A 330 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 331 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 335 CG CD OE1 OE2 REMARK 470 LEU A 373 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 207 CG - SD - CE ANGL. DEV. = -9.8 DEGREES REMARK 500 LEU A 245 CA - CB - CG ANGL. DEV. = 17.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 85 62.23 -108.42 REMARK 500 HIS A 100 61.79 -105.24 REMARK 500 ALA A 142 12.72 -145.16 REMARK 500 GLN A 199 15.42 58.07 REMARK 500 GLN A 223 71.90 29.04 REMARK 500 ASP A 247 -82.84 -115.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 378 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 222 OE2 REMARK 620 2 ASP A 247 OD2 88.6 REMARK 620 3 HOH A 386 O 99.3 93.9 REMARK 620 4 HOH A 387 O 94.6 92.2 165.0 REMARK 620 5 HOH A 388 O 173.4 85.0 82.4 84.4 REMARK 620 6 HOH A 389 O 99.3 172.1 84.1 88.0 87.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 377 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 237 O REMARK 620 2 LEU A 240 O 97.2 REMARK 620 3 HOH A 380 O 96.6 87.2 REMARK 620 4 HOH A 381 O 93.3 86.9 169.0 REMARK 620 5 HOH A 382 O 176.5 86.3 84.2 86.2 REMARK 620 6 HOH A 383 O 91.9 170.4 88.4 95.9 84.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 377 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 378 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 379 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-9464A RELATED DB: TARGETDB DBREF 3MY9 A 2 376 UNP A8HTB8 A8HTB8_AZOC5 2 376 SEQADV 3MY9 SER A 0 UNP A8HTB8 EXPRESSION TAG SEQADV 3MY9 LEU A 1 UNP A8HTB8 EXPRESSION TAG SEQRES 1 A 377 SER LEU SER TRP ASP SER VAL VAL GLU ARG ILE ARG ILE SEQRES 2 A 377 PHE LEU VAL GLU SER PRO ILE LYS MET ALA ARG LEU GLN SEQRES 3 A 377 GLY VAL GLY ASN VAL LYS GLY SER VAL LYS ARG VAL LEU SEQRES 4 A 377 LEU GLU VAL THR SER ALA ASP GLY ILE VAL GLY TRP GLY SEQRES 5 A 377 GLU ALA ALA PRO TRP GLU VAL PHE THR GLY THR PRO GLU SEQRES 6 A 377 ALA ALA PHE SER ALA LEU ASP ILE TYR LEU ARG PRO LEU SEQRES 7 A 377 ILE LEU GLY ALA PRO ILE LYS ARG VAL ARG GLU LEU MET SEQRES 8 A 377 ALA ARG MET ASP LYS MET LEU VAL GLY HIS GLY GLU ALA SEQRES 9 A 377 LYS ALA ALA VAL GLU MET ALA LEU LEU ASP ILE LEU GLY SEQRES 10 A 377 LYS ALA THR GLY LEU SER VAL ALA ASP LEU LEU GLY GLY SEQRES 11 A 377 ARG VAL ARG ASP ARG ILE PRO LEU SER PHE SER ILE ALA SEQRES 12 A 377 ASP PRO ASP PHE ASP ALA ASP LEU GLU ARG MET ARG ALA SEQRES 13 A 377 MET VAL PRO ALA GLY HIS THR VAL PHE LYS MET LYS THR SEQRES 14 A 377 GLY VAL LYS PRO HIS ALA GLU GLU LEU ARG ILE LEU GLU SEQRES 15 A 377 THR MET ARG GLY GLU PHE GLY GLU ARG ILE ASP LEU ARG SEQRES 16 A 377 LEU ASP PHE ASN GLN ALA LEU THR PRO PHE GLY ALA MET SEQRES 17 A 377 LYS ILE LEU ARG ASP VAL ASP ALA PHE ARG PRO THR PHE SEQRES 18 A 377 ILE GLU GLN PRO VAL PRO ARG ARG HIS LEU ASP ALA MET SEQRES 19 A 377 ALA GLY PHE ALA ALA ALA LEU ASP THR PRO ILE LEU ALA SEQRES 20 A 377 ASP GLU SER CYS PHE ASP ALA VAL ASP LEU MET GLU VAL SEQRES 21 A 377 VAL ARG ARG GLN ALA ALA ASP ALA ILE SER VAL LYS ILE SEQRES 22 A 377 MET LYS CYS GLY GLY LEU MET LYS ALA GLN SER LEU MET SEQRES 23 A 377 ALA ILE ALA ASP THR ALA GLY LEU PRO GLY TYR GLY GLY SEQRES 24 A 377 THR LEU TRP GLU GLY GLY ILE ALA LEU ALA ALA GLY THR SEQRES 25 A 377 GLN LEU ILE ALA ALA THR PRO GLY ILE SER LEU GLY CYS SEQRES 26 A 377 GLU PHE TYR MET PRO HIS HIS VAL LEU THR GLU ASP VAL SEQRES 27 A 377 LEU GLU GLU ARG ILE ALA ASN SER ALA GLY HIS VAL ILE SEQRES 28 A 377 VAL PRO ASP GLY PRO GLY LEU GLY ILE SER ILE SER GLU SEQRES 29 A 377 ALA SER LEU ARG GLY ASN ALA LYS ILE LEU ALA GLU ARG HET MG A 377 1 HET MG A 378 1 HET GOL A 379 6 HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MG 2(MG 2+) FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *54(H2 O) HELIX 1 1 THR A 62 ILE A 72 1 11 HELIX 2 2 LEU A 74 LEU A 79 1 6 HELIX 3 3 ARG A 85 LEU A 97 1 13 HELIX 4 4 HIS A 100 GLY A 120 1 21 HELIX 5 5 ALA A 124 GLY A 128 5 5 HELIX 6 6 ASP A 145 VAL A 157 1 13 HELIX 7 7 PRO A 172 GLY A 188 1 17 HELIX 8 8 GLU A 189 ILE A 191 5 3 HELIX 9 9 GLY A 205 ALA A 215 1 11 HELIX 10 10 HIS A 229 LEU A 240 1 12 HELIX 11 11 ASP A 252 GLN A 263 1 12 HELIX 12 12 LYS A 271 GLY A 276 1 6 HELIX 13 13 GLY A 277 GLY A 292 1 16 HELIX 14 14 GLY A 303 ALA A 316 1 14 HELIX 15 15 SER A 362 ALA A 370 1 9 SHEET 1 A 4 VAL A 48 ALA A 53 0 SHEET 2 A 4 VAL A 34 SER A 43 -1 N VAL A 41 O GLY A 49 SHEET 3 A 4 VAL A 7 SER A 17 -1 N PHE A 13 O LEU A 38 SHEET 4 A 4 LYS A 371 LEU A 373 -1 O LEU A 373 N LEU A 14 SHEET 1 B 2 ILE A 19 LYS A 20 0 SHEET 2 B 2 VAL A 332 LEU A 333 -1 O VAL A 332 N LYS A 20 SHEET 1 C 3 ARG A 134 PRO A 136 0 SHEET 2 C 3 HIS A 348 ILE A 350 -1 O VAL A 349 N ILE A 135 SHEET 3 C 3 ASN A 344 SER A 345 -1 N SER A 345 O HIS A 348 SHEET 1 D 7 PHE A 139 ILE A 141 0 SHEET 2 D 7 VAL A 163 LYS A 167 1 O LYS A 165 N ILE A 141 SHEET 3 D 7 ASP A 192 ASP A 196 1 O ARG A 194 N MET A 166 SHEET 4 D 7 ILE A 221 GLU A 222 1 O GLU A 222 N LEU A 195 SHEET 5 D 7 ILE A 244 ALA A 246 1 O LEU A 245 N ILE A 221 SHEET 6 D 7 ALA A 267 SER A 269 1 O ALA A 267 N ALA A 246 SHEET 7 D 7 GLY A 295 TYR A 296 1 O TYR A 296 N ILE A 268 SHEET 1 E 2 THR A 299 LEU A 300 0 SHEET 2 E 2 GLU A 325 PHE A 326 1 O GLU A 325 N LEU A 300 LINK OE2 GLU A 222 MG MG A 378 1555 1555 2.19 LINK O ALA A 237 MG MG A 377 1555 1555 2.02 LINK O LEU A 240 MG MG A 377 1555 1555 2.07 LINK OD2 ASP A 247 MG MG A 378 1555 1555 2.01 LINK MG MG A 377 O HOH A 380 1555 1555 2.12 LINK MG MG A 377 O HOH A 381 1555 1555 1.99 LINK MG MG A 377 O HOH A 382 1555 1555 2.19 LINK MG MG A 377 O HOH A 383 1555 1555 2.14 LINK MG MG A 378 O HOH A 386 1555 1555 2.14 LINK MG MG A 378 O HOH A 387 1555 1555 2.27 LINK MG MG A 378 O HOH A 388 1555 1555 2.05 LINK MG MG A 378 O HOH A 389 1555 1555 2.05 SITE 1 AC1 6 ALA A 237 LEU A 240 HOH A 380 HOH A 381 SITE 2 AC1 6 HOH A 382 HOH A 383 SITE 1 AC2 6 GLU A 222 ASP A 247 HOH A 386 HOH A 387 SITE 2 AC2 6 HOH A 388 HOH A 389 SITE 1 AC3 5 ARG A 211 ASP A 214 ALA A 239 ASP A 241 SITE 2 AC3 5 HOH A 430 CRYST1 127.993 127.993 98.036 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007813 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007813 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010200 0.00000